Metagenome / Metatranscriptome Family F090757

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090757
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	42 residues
Representative Sequence	MREVVAKRIMEMAQRGVQDREALVADALRFITANYEQPSKLAK
Number of Associated Samples	82
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.85 %
% of genes near scaffold ends (potentially truncated)	64.81 %
% of genes from short scaffolds (< 2000 bps)	92.59 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.222 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.852 % of family members)
Environment Ontology (ENVO)	Unclassified (22.222 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.593 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 39.44% β-sheet: 0.00% Coil/Unstructured: 60.56%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF01520	Amidase_3	28.70
PF01522	Polysacc_deac_1	2.78
PF12599	DUF3768	0.93
PF13701	DDE_Tnp_1_4	0.93
PF00196	GerE	0.93
PF04392	ABC_sub_bind	0.93
PF01875	Memo	0.93
PF03592	Terminase_2	0.93
PF00872	Transposase_mut	0.93
PF01425	Amidase	0.93
PF13751	DDE_Tnp_1_6	0.93
PF01464	SLT	0.93
PF03466	LysR_substrate	0.93
PF14237	GYF_2	0.93
PF03734	YkuD	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	28.70
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	2.78
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.93
COG1355	Predicted class III extradiol dioxygenase, MEMO1 family	General function prediction only [R]	0.93
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.22 %
Unclassified	root	N/A	27.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.22 %
Unclassified	root	N/A	27.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.22 %
Unclassified	root	N/A	27.78 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	69.44 %
Unclassified	root	N/A	27.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.78 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.89 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.78 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.85 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.93 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.93 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
Rubrobacter marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	0.93 %
Microvirga massiliensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100998644	Not Available	721	Open in IMG/M
3300002245\|JGIcombinedJ26739_101482758	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300005437\|Ga0070710_10905197	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300005546\|Ga0070696_101612982	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300005610\|Ga0070763_10265170	All Organisms → cellular organisms → Bacteria → Proteobacteria	935	Open in IMG/M
3300005610\|Ga0070763_10771028	All Organisms → cellular organisms → Bacteria → Proteobacteria	567	Open in IMG/M
3300005764\|Ga0066903_101831935	All Organisms → cellular organisms → Bacteria → Proteobacteria	1160	Open in IMG/M
3300005764\|Ga0066903_108022885	All Organisms → cellular organisms → Bacteria → Proteobacteria	541	Open in IMG/M
3300006028\|Ga0070717_11212144	All Organisms → cellular organisms → Bacteria → Proteobacteria	687	Open in IMG/M
3300006028\|Ga0070717_11995541	Not Available	523	Open in IMG/M
3300006052\|Ga0075029_100046535	All Organisms → cellular organisms → Bacteria → Proteobacteria	2503	Open in IMG/M
3300006052\|Ga0075029_100165834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1365	Open in IMG/M
3300006052\|Ga0075029_100365928	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300006057\|Ga0075026_101053956	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300006059\|Ga0075017_100556703	All Organisms → cellular organisms → Bacteria → Proteobacteria	874	Open in IMG/M
3300006086\|Ga0075019_10022554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3519	Open in IMG/M
3300006086\|Ga0075019_11100831	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300006102\|Ga0075015_100081678	Not Available	1594	Open in IMG/M
3300006174\|Ga0075014_100073333	Not Available	1534	Open in IMG/M
3300006174\|Ga0075014_100369101	Not Available	775	Open in IMG/M
3300006174\|Ga0075014_100388896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	758	Open in IMG/M
3300006174\|Ga0075014_100896490	Not Available	531	Open in IMG/M
3300006904\|Ga0075424_102851475	Not Available	503	Open in IMG/M
3300007982\|Ga0102924_1168432	All Organisms → cellular organisms → Bacteria → Proteobacteria	988	Open in IMG/M
3300009520\|Ga0116214_1275732	All Organisms → cellular organisms → Bacteria → Proteobacteria	642	Open in IMG/M
3300009521\|Ga0116222_1079025	All Organisms → cellular organisms → Bacteria → Proteobacteria	1420	Open in IMG/M
3300009522\|Ga0116218_1054936	All Organisms → cellular organisms → Bacteria → Proteobacteria	1807	Open in IMG/M
3300009522\|Ga0116218_1464815	All Organisms → cellular organisms → Bacteria → Proteobacteria	564	Open in IMG/M
3300009683\|Ga0116224_10278990	All Organisms → cellular organisms → Bacteria → Proteobacteria	796	Open in IMG/M
3300009700\|Ga0116217_10098253	All Organisms → cellular organisms → Bacteria → Proteobacteria	2008	Open in IMG/M
3300009792\|Ga0126374_11608748	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300009824\|Ga0116219_10762944	All Organisms → cellular organisms → Bacteria → Proteobacteria	528	Open in IMG/M
3300010361\|Ga0126378_13309886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	512	Open in IMG/M
3300010366\|Ga0126379_13866133	Not Available	502	Open in IMG/M
3300010373\|Ga0134128_10978925	Not Available	935	Open in IMG/M
3300010373\|Ga0134128_11556619	Not Available	728	Open in IMG/M
3300010375\|Ga0105239_11249332	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300010376\|Ga0126381_103302327	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300010379\|Ga0136449_100433741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2314	Open in IMG/M
3300010396\|Ga0134126_12736923	All Organisms → cellular organisms → Bacteria → Proteobacteria	535	Open in IMG/M
3300010398\|Ga0126383_11189877	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300010398\|Ga0126383_12879278	Not Available	562	Open in IMG/M
3300010399\|Ga0134127_12001252	All Organisms → cellular organisms → Bacteria → Proteobacteria	657	Open in IMG/M
3300012955\|Ga0164298_10857400	Not Available	656	Open in IMG/M
3300012957\|Ga0164303_10441021	Not Available	817	Open in IMG/M
3300012960\|Ga0164301_11367501	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300012961\|Ga0164302_10663008	Not Available	767	Open in IMG/M
3300012984\|Ga0164309_10183086	All Organisms → cellular organisms → Bacteria → Proteobacteria	1426	Open in IMG/M
3300012988\|Ga0164306_11640319	Not Available	556	Open in IMG/M
3300015372\|Ga0132256_101663507	Not Available	748	Open in IMG/M
3300016270\|Ga0182036_11045142	All Organisms → cellular organisms → Bacteria → Proteobacteria	675	Open in IMG/M
3300016387\|Ga0182040_10914071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter marinus	728	Open in IMG/M
3300016387\|Ga0182040_11618790	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300016422\|Ga0182039_11408057	Not Available	633	Open in IMG/M
3300016445\|Ga0182038_11583137	All Organisms → cellular organisms → Bacteria → Proteobacteria	589	Open in IMG/M
3300017932\|Ga0187814_10229633	Not Available	701	Open in IMG/M
3300017933\|Ga0187801_10019563	All Organisms → cellular organisms → Bacteria → Proteobacteria	2291	Open in IMG/M
3300017942\|Ga0187808_10079608	All Organisms → cellular organisms → Bacteria → Proteobacteria	1412	Open in IMG/M
3300017970\|Ga0187783_10052623	Not Available	3003	Open in IMG/M
3300018001\|Ga0187815_10502916	Not Available	519	Open in IMG/M
3300018058\|Ga0187766_10456586	All Organisms → cellular organisms → Bacteria → Proteobacteria	854	Open in IMG/M
3300020579\|Ga0210407_11216903	All Organisms → cellular organisms → Bacteria → Proteobacteria	566	Open in IMG/M
3300020580\|Ga0210403_11362230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	539	Open in IMG/M
3300020582\|Ga0210395_10534689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	881	Open in IMG/M
3300020583\|Ga0210401_11237978	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
3300020583\|Ga0210401_11454114	Not Available	543	Open in IMG/M
3300021088\|Ga0210404_10381775	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300021168\|Ga0210406_10301188	All Organisms → cellular organisms → Bacteria → Proteobacteria	1304	Open in IMG/M
3300021168\|Ga0210406_10791052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis	723	Open in IMG/M
3300021171\|Ga0210405_10335991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300021180\|Ga0210396_10172172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1940	Open in IMG/M
3300021180\|Ga0210396_10794791	Not Available	812	Open in IMG/M
3300021180\|Ga0210396_11326006	Not Available	598	Open in IMG/M
3300021401\|Ga0210393_10163518	All Organisms → cellular organisms → Bacteria → Proteobacteria	1792	Open in IMG/M
3300021401\|Ga0210393_10691483	All Organisms → cellular organisms → Bacteria → Proteobacteria	832	Open in IMG/M
3300021403\|Ga0210397_10426325	All Organisms → cellular organisms → Bacteria → Proteobacteria	995	Open in IMG/M
3300021404\|Ga0210389_11144035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	600	Open in IMG/M
3300021406\|Ga0210386_11493820	All Organisms → cellular organisms → Bacteria → Proteobacteria	563	Open in IMG/M
3300021420\|Ga0210394_10400235	Not Available	1208	Open in IMG/M
3300021420\|Ga0210394_11570935	All Organisms → cellular organisms → Bacteria → Proteobacteria	554	Open in IMG/M
3300021432\|Ga0210384_10364161	All Organisms → cellular organisms → Bacteria → Proteobacteria	1302	Open in IMG/M
3300021477\|Ga0210398_11612391	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300021479\|Ga0210410_10441700	Not Available	1164	Open in IMG/M
3300021559\|Ga0210409_11245175	All Organisms → cellular organisms → Bacteria → Proteobacteria	620	Open in IMG/M
3300022715\|Ga0242678_1028683	All Organisms → cellular organisms → Bacteria → Proteobacteria	722	Open in IMG/M
3300027783\|Ga0209448_10136115	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300027894\|Ga0209068_10892693	Not Available	526	Open in IMG/M
3300027898\|Ga0209067_10433017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300027911\|Ga0209698_10826576	All Organisms → cellular organisms → Bacteria → Proteobacteria	698	Open in IMG/M
3300028047\|Ga0209526_10308452	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300030494\|Ga0310037_10171114	All Organisms → cellular organisms → Bacteria → Proteobacteria	977	Open in IMG/M
3300031128\|Ga0170823_12893789	Not Available	1172	Open in IMG/M
3300031708\|Ga0310686_110781557	All Organisms → cellular organisms → Bacteria → Proteobacteria	848	Open in IMG/M
3300031708\|Ga0310686_113388770	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300031708\|Ga0310686_118380490	Not Available	917	Open in IMG/M
3300031718\|Ga0307474_10119229	All Organisms → cellular organisms → Bacteria → Proteobacteria	1980	Open in IMG/M
3300031718\|Ga0307474_10321869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1193	Open in IMG/M
3300031719\|Ga0306917_10360752	All Organisms → cellular organisms → Bacteria → Proteobacteria	1131	Open in IMG/M
3300031719\|Ga0306917_10549496	All Organisms → cellular organisms → Bacteria → Proteobacteria	908	Open in IMG/M
3300031798\|Ga0318523_10692396	Not Available	500	Open in IMG/M
3300031946\|Ga0310910_10165633	All Organisms → cellular organisms → Bacteria → Proteobacteria	1700	Open in IMG/M
3300031946\|Ga0310910_10519087	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300031954\|Ga0306926_10114338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3321	Open in IMG/M
3300032001\|Ga0306922_10822572	All Organisms → cellular organisms → Bacteria → Proteobacteria	970	Open in IMG/M
3300032076\|Ga0306924_11062485	Not Available	885	Open in IMG/M
3300032160\|Ga0311301_10026163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15684	Open in IMG/M
3300033289\|Ga0310914_10417060	All Organisms → cellular organisms → Bacteria → Proteobacteria	1215	Open in IMG/M
3300033289\|Ga0310914_11020137	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.22%
Host-Associated	Host-Associated	2.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.78%
Aquatic	Environmental → Aquatic	19.44%
Plants	Host-Associated → Plants	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.78%
Sediment	Environmental → Aquatic → Sediment	13.89%
Freshwater	Environmental → Aquatic → Freshwater	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.78%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	13.89%
Loam	Environmental → Terrestrial → Soil → Loam	10.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	38.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	13.89%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.56%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022715	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1009986441	3300002245	Forest Soil	RAMREVVAKRIFEMARNGVEDREALVTNALKFVAANYEPSRQRAK*
JGIcombinedJ26739_1014827581	3300002245	Forest Soil	MEMAQRGVQDREALVADALRFVTANYEEPSKQTS*
Ga0070710_109051972	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AYSRVMREVVAKRIMEMAQCGVEDREALVEDALRFIAANYEQPSKLAK*
Ga0070696_1016129822	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VAKRIMEMAQRGVEDREALVADALGFIAANYEQPQPHKLAK*
Ga0070763_102651701	3300005610	Soil	REVVAKRITEMAQPGVQDRETLVEDAARFVTANYERPSD*
Ga0070763_107710282	3300005610	Soil	MREVVAKRIMEMAQRGVQDRKALAADALRFVAANYDQPSEIAK*
Ga0066903_1018319351	3300005764	Tropical Forest Soil	AMREVVAKRIIEMAQRGIQDREALVEDVMRFVTTNYERPSN*
Ga0066903_1080228851	3300005764	Tropical Forest Soil	KRIMEMAQRGVQDRAALVIDAIQFIAANYEQPSELAT*
Ga0070717_112121442	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	EVVAKRIIEMAQRGVEGREALVADALRFIAANYEQQQPRKLAN*
Ga0070717_119955411	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MREVVAKRIMEMAQHGVQDREALVADALRFVAANYDQPSKLAK*
Ga0075029_1000465353	3300006052	Watersheds	MREVVAKRIMEMAQRGVQDREALVADALRFVTANYEEPSKQTS*
Ga0075029_1001658342	3300006052	Watersheds	MGERVMREVVAKRIMEMAERGVQDREVLVTDAIRFIAANYQQPSTLAK*
Ga0075029_1003659282	3300006052	Watersheds	EVVAKRIMEMAQRGVQDREELVADALRFVTANYEEPSKLTS*
Ga0075026_1010539562	3300006057	Watersheds	RPAYSRVMREVVAKRIMEMAQRGVQDREALVADALRFIAANYEESSKLTN*
Ga0075017_1005567032	3300006059	Watersheds	VVAKRIMEMAQRGVEDRQVLVEDAVRFVTTNYEGPSKLTN*
Ga0075019_100225546	3300006086	Watersheds	MREVVAKRIMEMAERGVQDREVLVTDAIRFIAANYQQPSTLAK*
Ga0075019_111008311	3300006086	Watersheds	IMEMAQRGVQDREALVADALRFITAAYEEPNKLTS*
Ga0075015_1000816783	3300006102	Watersheds	RPAYSRVMREVVAKRIMELAQRGERDRETLVEDALRFVVANYEKPALR*
Ga0075014_1000733334	3300006174	Watersheds	MREVVAKRIIEMAQRGVQDRETLVEDAVRFVTTNYERPSN*
Ga0075014_1003691011	3300006174	Watersheds	MREVVAKRIIEMAQRGVQDRETLVEDAVRFVTTNYERRSN*
Ga0075014_1003888961	3300006174	Watersheds	VVAKRIMEMAQRGVQDREELVADALRFVTANYEEPSKLTS*
Ga0075014_1008964902	3300006174	Watersheds	MEMAQRGVEDREALVTDALRFIAANYEKPSKLAK*
Ga0075424_1028514751	3300006904	Populus Rhizosphere	VVAKRIMEMAQRGVKDREALVTDAIQFIATNYEQPSELAT*
Ga0102924_11684322	3300007982	Iron-Sulfur Acid Spring	VAKRIMEMAQRGVQDRDALVADALRFVAANYEEPSKLAK*
Ga0116214_12757322	3300009520	Peatlands Soil	VVAKRIMEMAQRGVEDREALVEDALRFITANYEQPSKLAK*
Ga0116222_10790252	3300009521	Peatlands Soil	MREVVAKRIMEMAQRGVQDREALVADALRFITANYEQPSKLAK*
Ga0116218_10549362	3300009522	Peatlands Soil	MREVVAKRIMEMAQRGVQDRDALVADDLRFVSANYEEPSKLTS*
Ga0116218_14648151	3300009522	Peatlands Soil	KRIMEMAQRGVQDREALVADALRFIAANYEQPNKRQNNG*
Ga0116224_102789902	3300009683	Peatlands Soil	ARPAYSRVMREVVAKRIMEMAQRGVQDRQALVEDAVRFISANYERPSKLTN*
Ga0116217_100982532	3300009700	Peatlands Soil	MREVVAKRIMEMAQRGIEDREALVADALHFVTTNYEEPSKLTN*
Ga0126374_116087482	3300009792	Tropical Forest Soil	MREVVAKRIMQMAQRGVQDREALVADALRFVAANYEEPSKLEK*
Ga0116219_107629442	3300009824	Peatlands Soil	EVVAKRIMEMAQRGVQDRDALVADDLRFVSANYEEPSKLTS*
Ga0126378_133098862	3300010361	Tropical Forest Soil	VMREVVAKRIIEMAQRGVENREALVADALRFITANYEQPEPCKLAK*
Ga0126379_138661331	3300010366	Tropical Forest Soil	RIMEMAQRGVQDREALVADALRFVTTNYEESSKLTN*
Ga0134128_109789251	3300010373	Terrestrial Soil	MREVVAKRIIEMAQRGVEDRDALVADVLRFVTTNYEGPSKPTN*
Ga0134128_115566191	3300010373	Terrestrial Soil	VVAKRIMEMAQRGVKDREALVTDAIQFIATNYEQPSE
Ga0105239_112493322	3300010375	Corn Rhizosphere	MREVVAKRIIDMAQRGVEGRETLVADALRFIAENYEQPSELAK*
Ga0126381_1033023271	3300010376	Tropical Forest Soil	AKRIMEMAQRGVQDREVLVVDALRFVAANYEEPSKLAK*
Ga0136449_1004337411	3300010379	Peatlands Soil	MREVVAKRIMEMAQRGVQDHKTRVEDAVRFVTANYEEPSKLTN*
Ga0134126_127369231	3300010396	Terrestrial Soil	RIMEMAQCGVKDRETLVTDAIQFIAANYEQPSELAT*
Ga0126383_111898772	3300010398	Tropical Forest Soil	MREVVAKRIMGMAQRGVQDHEALVEDAVRFVTTNYDGPSKLTN*
Ga0126383_128792781	3300010398	Tropical Forest Soil	MREVVAKRIIEMAQRGIQDREALVEDVMRFVTTNYERPSN*
Ga0134127_120012522	3300010399	Terrestrial Soil	MREVVAKRIIELAQRGVEDRGALVADALGFIAANYEQPQPHKLAK*
Ga0164298_108574001	3300012955	Soil	MREVVAKRVIEMAQRGVEDREALVVDALQFIAANYDQPQPRQLAK*
Ga0164303_104410211	3300012957	Soil	MREAVAKRIMEMAQRGVQDREALVADALRFIAANYEQPSKLAK*
Ga0164301_113675011	3300012960	Soil	KRIMEMAQRGVENREALVTDALRFIAANYEQPSKLAN*
Ga0164302_106630081	3300012961	Soil	MREAVAKRIMEMAQRGVQDREALVADAVRFITASYEQPSKLAKITA*
Ga0164309_101830862	3300012984	Soil	YSRVMREVVAKRIMEMAQRGVEDREALVEDALRFITANYEQPSKLAK*
Ga0164306_116403191	3300012988	Soil	MREVVAKRIIELAQRGVEDRGALVADALGFIAANYEQPQPRKLAK*
Ga0132256_1016635071	3300015372	Arabidopsis Rhizosphere	MREVIAKRIVEMAQCGMQDREALVADAIQFIAVNYEQPSELAT*
Ga0182036_110451421	3300016270	Soil	MREVVAHRIIEMAQRGVQHREALVADALRFVAANYEEPSKLAK
Ga0182040_109140712	3300016387	Soil	MREVVAKRIMEMAQRGVQDREALVADALRFVAANYEEPSKLTN
Ga0182040_116187901	3300016387	Soil	VVAKRIMEMAQRGVQDREALVADVLRFVAANYEEPSKLAK
Ga0182039_114080572	3300016422	Soil	MREVVAKRIIEIAQRGVQDRDTLVEDAVRFVTTNYEGPSKLTN
Ga0182038_115831372	3300016445	Soil	AMREVVAKRIIEMAQRGVQDRDALVADALGFVAANYEEPGKLAK
Ga0187814_102296331	3300017932	Freshwater Sediment	VAKRIMEMAQRGVQEREELVADALRFVTANYEEPSKLTS
Ga0187801_100195633	3300017933	Freshwater Sediment	MREVVAKRIMEMAQRGVQDREELVADALRFVTANYEEPSKQTS
Ga0187808_100796081	3300017942	Freshwater Sediment	MREVVAKRIMEMAQRGVQDREELVADALRFVTANYEEPSKLTS
Ga0187783_100526236	3300017970	Tropical Peatland	MREVVAKRIMEMAQRGVQDREALVADALRFIAANYEERRILAK
Ga0187815_105029162	3300018001	Freshwater Sediment	VAKRIMEMAQRGVQDRQALVEDAVRFISANYERPSKLTN
Ga0187766_104565862	3300018058	Tropical Peatland	MREVVAKRIMEMAQRGVQDREALVADALRFVTANYEEPSKLTS
Ga0210407_112169032	3300020579	Soil	RIMEMAQRGVEDREALVEDALRFITANYEQPSKLAK
Ga0210403_113622302	3300020580	Soil	CHARVVAKRIMEMAQRGVEDREALVEDALRFITANYEQPSKLAK
Ga0210395_105346893	3300020582	Soil	RPAYSRVMREVVAKHIMEMAQRGVEDREALVADALRFIAANYEERSKLAK
Ga0210401_112379781	3300020583	Soil	VREVVAKRIMEMAQRGVQDREALVADTLRFVAANYDEPSKLAK
Ga0210401_114541141	3300020583	Soil	RIIEMAPRGVRDREALVTDALQFIAANYEQPTKLTS
Ga0210404_103817751	3300021088	Soil	YSRVMREVVAKRIMEMAQRGVEDREALVEDALRFITANYEQPSKLAK
Ga0210406_103011881	3300021168	Soil	MREVVAKRIMEMAQRGVQGREALVADALRFITANYEQPSKLAK
Ga0210406_107910521	3300021168	Soil	CQTHMEMAQRGVQDREALVADALRFVTANYEEPSKQTS
Ga0210405_103359913	3300021171	Soil	REVVAKRIMEMAQRGVENREALVTDALRFVAANYEQPSKRR
Ga0210396_101721721	3300021180	Soil	AMREVVAKRIIEMAQRGMEDREALVTGALQFIAANYEQSGQRVK
Ga0210396_107947911	3300021180	Soil	LTRPAYSRVMREVVAKRIMEMAQCGVEDREALVEDALRFIAANYEQPSKLAK
Ga0210396_113260061	3300021180	Soil	TRPAYSRVMREVVAKRIMELAQRGEQDRETLVEDALLFVVANYEDPALR
Ga0210393_101635182	3300021401	Soil	MGERVMREVVAKRIMEMAERGVQDREVLVTDAIRFIAANYQQPSTLAK
Ga0210393_106914832	3300021401	Soil	AKRIMEMAQRGVQDREALVADTLRFVAANYEEPSKLAK
Ga0210397_104263251	3300021403	Soil	YLRVMREVVAKRIIELAQRGVQDRETLVEDAVRFVTANYERPSD
Ga0210389_111440351	3300021404	Soil	VAKRIMEMAQRGVQDREALVADAVRFITANYEQPSKLAKITA
Ga0210386_114938201	3300021406	Soil	AKRIMEMAQRGVQDREALVADALRFIAANYEERSKLAK
Ga0210394_104002351	3300021420	Soil	VAKRIMEMAQRGVQDREALVADALRFIAANYEQPSKLAK
Ga0210394_115709351	3300021420	Soil	SRLTRPAYSRVMREVVAKHIMEMAQRGVEDREALVADALRFIAANYEERSKLAK
Ga0210384_103641612	3300021432	Soil	MREVVAKRIMEMAQRGVRDRQALVADALRFITANYEDSSKLTS
Ga0210398_116123911	3300021477	Soil	VVAKRIMEMAQRGVQDRVALVADALRFIAANYEERSKLAK
Ga0210410_104417001	3300021479	Soil	RIMEMVQRGVQGREALVADALRFITANYEQPSKLAK
Ga0210409_112451751	3300021559	Soil	VMREVVAKRIMEMAQRGVQDRVALVADALRFIAANYEERSKLAK
Ga0242678_10286831	3300022715	Soil	RVMREVVAKRITEMAQRGVQDREILVEDAVRFVTANYERPSD
Ga0209448_101361152	3300027783	Bog Forest Soil	MREVVAKRIMEMAQRGVQDREALVADALRFVTANYEEPSKQTS
Ga0209068_108926931	3300027894	Watersheds	MREVVAKRIIEMAQRGVQDRETLVEDAVRFVTTNYERRS
Ga0209067_104330172	3300027898	Watersheds	AMREVVAKRIIEMAQRGVQDRETLVEDAVRFVTTNYERPSN
Ga0209698_108265762	3300027911	Watersheds	LTRPAYSRVMREVVAKRIMEMAERGVQDREVLVTDAIRFIAANYQQPSTLAK
Ga0209526_103084522	3300028047	Forest Soil	IMEMAQRGVENREALVTDALRFIAANYEQPSKLAN
Ga0310037_101711141	3300030494	Peatlands Soil	IMEMAQRGVQDRDALVADDLRFVSANYEEPSKLTS
Ga0170823_128937891	3300031128	Forest Soil	MREVVAKRIMEMAQRGVQDHDALVADALRFVTANYEEPSKQTS
Ga0310686_1107815572	3300031708	Soil	PAYSRVMREVVAKRIMEMAQRGVEDREALVADALRFIAANYEQPTKLTS
Ga0310686_1133887701	3300031708	Soil	RPAYSRVMREVVAKRIMEMAQRGVEDREALVEDALRFITANYEQPSKLAK
Ga0310686_1183804901	3300031708	Soil	MREVVAKRIIEMAQRGVQDRETLVEDAVRFVTTNYERPSN
Ga0307474_101192293	3300031718	Hardwood Forest Soil	AMREVVAKRIMEMAQRGVQDREALVADALRFVTANYEEPSKQTS
Ga0307474_103218692	3300031718	Hardwood Forest Soil	MGERVVREVVAKRIMEMAERGVQDREVLVTDAIRFIAANYQQPSTLAK
Ga0306917_103607521	3300031719	Soil	KRIIDMAQRGVQDREALVADALRFVTTNYEESSKLTN
Ga0306917_105494961	3300031719	Soil	IIDMAQRGVEEREALVTDALRFIAANYEQPGKLVK
Ga0318523_106923962	3300031798	Soil	MREVVAKRIMEMAQRGVQDREALVADALRFVTTNYEESSKLTN
Ga0310910_101656331	3300031946	Soil	VAKRIMEMAQRGAQDREALVADALRFVTTNYEESSKLTN
Ga0310910_105190872	3300031946	Soil	VVAKRIIEMAQRGVEDRQALVTDALRFIAANYEQPTKFGK
Ga0306926_101143381	3300031954	Soil	VVAKRIMEMAQRGVQDREALVADALRFVTTNYEESSKLTN
Ga0306922_108225722	3300032001	Soil	MREAVAKRIMEMAQRGVQDRDALVADALRFVTANYEEPSKLTS
Ga0306924_110624851	3300032076	Soil	RPAYSRVMREVVAKRIMELAQRGEQDRETLVVDALLFVVANYEDPALR
Ga0311301_1002616314	3300032160	Peatlands Soil	MREVVAKRIMEMAQRGVQDREALVADALRFITANYEQPSKLAK
Ga0310914_104170601	3300033289	Soil	KRIMEMAQRGVQDREALVADALRFVTTNYEESSKLTN
Ga0310914_110201372	3300033289	Soil	KRIMEMAQRGVQDRGALVADALHFVAANYEEPSKLTN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090757

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences