Metagenome / Metatranscriptome Family F090779

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090779
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	55 residues
Representative Sequence	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTGILDRLKRPR
Number of Associated Samples	75
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.70 %
% of genes near scaffold ends (potentially truncated)	19.44 %
% of genes from short scaffolds (< 2000 bps)	75.93 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.148 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (20.370 % of family members)
Environment Ontology (ENVO)	Unclassified (43.519 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.42% β-sheet: 0.00% Coil/Unstructured: 44.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00589	Phage_integrase	17.59
PF04773	FecR	2.78
PF04326	AlbA_2	1.85
PF12681	Glyoxalase_2	1.85
PF01575	MaoC_dehydratas	0.93
PF00072	Response_reg	0.93
PF05231	MASE1	0.93
PF04055	Radical_SAM	0.93
PF02517	Rce1-like	0.93
PF13248	zf-ribbon_3	0.93
PF14534	DUF4440	0.93
PF01569	PAP2	0.93
PF07719	TPR_2	0.93
PF00903	Glyoxalase	0.93
PF02965	Met_synt_B12	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2865	Predicted transcriptional regulator, contains HTH domain	Transcription [K]	1.85
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	0.93
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	89.81 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	89.81 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	66.67 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	12.96 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	12.96 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	12.96 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	12.96 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
unclassified Candidatus Udaeobacter	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter	12.96 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	66.67 %
Candidatus Udaeobacter sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	12.96 %
Unclassified	root	N/A	1.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1016359	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	803	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1032887	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	818	Open in IMG/M
3300000956\|JGI10216J12902_112514980	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	855	Open in IMG/M
3300001867\|JGI12627J18819_10457187	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300002899\|JGIcombinedJ43975_10001836	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3297	Open in IMG/M
3300002899\|JGIcombinedJ43975_10014292	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300003911\|JGI25405J52794_10015522	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1497	Open in IMG/M
3300004114\|Ga0062593_101918817	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	655	Open in IMG/M
3300004156\|Ga0062589_101847375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	608	Open in IMG/M
3300004268\|Ga0066398_10176284	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	551	Open in IMG/M
3300004463\|Ga0063356_105957010	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	523	Open in IMG/M
3300005289\|Ga0065704_10299453	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	888	Open in IMG/M
3300005330\|Ga0070690_100614313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	827	Open in IMG/M
3300005332\|Ga0066388_100000199	All Organisms → cellular organisms → Bacteria	24539	Open in IMG/M
3300005332\|Ga0066388_100017992	All Organisms → cellular organisms → Bacteria	6020	Open in IMG/M
3300005332\|Ga0066388_100059873	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4021	Open in IMG/M
3300005332\|Ga0066388_100184754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2696	Open in IMG/M
3300005332\|Ga0066388_100268878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2346	Open in IMG/M
3300005332\|Ga0066388_100615966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1706	Open in IMG/M
3300005332\|Ga0066388_101145304	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1323	Open in IMG/M
3300005332\|Ga0066388_102009191	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1037	Open in IMG/M
3300005332\|Ga0066388_104150249	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	738	Open in IMG/M
3300005332\|Ga0066388_108396928	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	515	Open in IMG/M
3300005355\|Ga0070671_101041897	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300005435\|Ga0070714_101556195	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300005437\|Ga0070710_11279455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	545	Open in IMG/M
3300005439\|Ga0070711_100783604	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	807	Open in IMG/M
3300005445\|Ga0070708_100307671	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1492	Open in IMG/M
3300005445\|Ga0070708_101848901	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	560	Open in IMG/M
3300005468\|Ga0070707_100135303	All Organisms → cellular organisms → Bacteria	2397	Open in IMG/M
3300005549\|Ga0070704_100749992	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	869	Open in IMG/M
3300005713\|Ga0066905_100509942	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1002	Open in IMG/M
3300005764\|Ga0066903_100001185	All Organisms → cellular organisms → Bacteria	18573	Open in IMG/M
3300005764\|Ga0066903_100142419	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3415	Open in IMG/M
3300005764\|Ga0066903_100187014	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3068	Open in IMG/M
3300005764\|Ga0066903_100569474	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1950	Open in IMG/M
3300005764\|Ga0066903_100580946	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1934	Open in IMG/M
3300005764\|Ga0066903_101860153	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1152	Open in IMG/M
3300005764\|Ga0066903_103380964	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	861	Open in IMG/M
3300005764\|Ga0066903_103691624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	824	Open in IMG/M
3300005764\|Ga0066903_103973452	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	793	Open in IMG/M
3300005764\|Ga0066903_104208204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	770	Open in IMG/M
3300005937\|Ga0081455_10611848	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	708	Open in IMG/M
3300006173\|Ga0070716_100843590	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	713	Open in IMG/M
3300006175\|Ga0070712_100134560	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1878	Open in IMG/M
3300006854\|Ga0075425_100858525	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1039	Open in IMG/M
3300006871\|Ga0075434_100576754	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1144	Open in IMG/M
3300006904\|Ga0075424_100628296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1147	Open in IMG/M
3300006904\|Ga0075424_101997635	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	612	Open in IMG/M
3300007255\|Ga0099791_10075995	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1527	Open in IMG/M
3300009147\|Ga0114129_10043040	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6356	Open in IMG/M
3300009162\|Ga0075423_10896769	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	940	Open in IMG/M
3300009792\|Ga0126374_10393260	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	966	Open in IMG/M
3300010046\|Ga0126384_11445686	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	642	Open in IMG/M
3300010048\|Ga0126373_10110290	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2559	Open in IMG/M
3300010048\|Ga0126373_10587547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1165	Open in IMG/M
3300010048\|Ga0126373_10632595	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1125	Open in IMG/M
3300010048\|Ga0126373_11130786	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	849	Open in IMG/M
3300010154\|Ga0127503_10799255	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	544	Open in IMG/M
3300010335\|Ga0134063_10012375	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	3374	Open in IMG/M
3300010358\|Ga0126370_12200234	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	543	Open in IMG/M
3300010359\|Ga0126376_11488652	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	705	Open in IMG/M
3300010359\|Ga0126376_11965680	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	626	Open in IMG/M
3300010361\|Ga0126378_10030654	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4808	Open in IMG/M
3300010361\|Ga0126378_13112950	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	528	Open in IMG/M
3300010398\|Ga0126383_10141202	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2231	Open in IMG/M
3300010398\|Ga0126383_11802781	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	700	Open in IMG/M
3300012198\|Ga0137364_11210926	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	565	Open in IMG/M
3300012200\|Ga0137382_10010692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4876	Open in IMG/M
3300012200\|Ga0137382_10055499	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2489	Open in IMG/M
3300012208\|Ga0137376_10100840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2445	Open in IMG/M
3300012355\|Ga0137369_10329234	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1123	Open in IMG/M
3300012918\|Ga0137396_10467698	Not Available	935	Open in IMG/M
3300012948\|Ga0126375_10449296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	946	Open in IMG/M
3300012971\|Ga0126369_12888470	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300014325\|Ga0163163_12326787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	594	Open in IMG/M
3300015356\|Ga0134073_10365485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	534	Open in IMG/M
3300015373\|Ga0132257_101658949	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	819	Open in IMG/M
3300016294\|Ga0182041_10066056	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2522	Open in IMG/M
3300018431\|Ga0066655_10088653	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1704	Open in IMG/M
3300019886\|Ga0193727_1026680	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2011	Open in IMG/M
3300020021\|Ga0193726_1252278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	714	Open in IMG/M
3300021168\|Ga0210406_10313216	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1274	Open in IMG/M
3300021178\|Ga0210408_11022526	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	639	Open in IMG/M
3300021560\|Ga0126371_11038908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	960	Open in IMG/M
3300021560\|Ga0126371_11520471	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	797	Open in IMG/M
3300021560\|Ga0126371_12438022	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	633	Open in IMG/M
3300025910\|Ga0207684_11202566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	627	Open in IMG/M
3300025930\|Ga0207701_10441273	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300025939\|Ga0207665_10132718	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1769	Open in IMG/M
3300026508\|Ga0257161_1111177	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	572	Open in IMG/M
3300026550\|Ga0209474_10063991	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2577	Open in IMG/M
3300027502\|Ga0209622_1000545	All Organisms → cellular organisms → Bacteria	4869	Open in IMG/M
3300027748\|Ga0209689_1427189	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031057\|Ga0170834_107597650	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	853	Open in IMG/M
3300031057\|Ga0170834_107625023	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	926	Open in IMG/M
3300031122\|Ga0170822_13004295	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → unclassified Candidatus Udaeobacter → Candidatus Udaeobacter sp.	504	Open in IMG/M
3300031122\|Ga0170822_15054398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	742	Open in IMG/M
3300031720\|Ga0307469_10280380	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1361	Open in IMG/M
3300031744\|Ga0306918_10961744	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	664	Open in IMG/M
3300031910\|Ga0306923_10347694	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1691	Open in IMG/M
3300031941\|Ga0310912_10866112	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	696	Open in IMG/M
3300032076\|Ga0306924_10377320	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1625	Open in IMG/M
3300032180\|Ga0307471_100086322	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2785	Open in IMG/M
3300032205\|Ga0307472_100918941	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300033412\|Ga0310810_10059832	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4625	Open in IMG/M
3300033412\|Ga0310810_10170455	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2502	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.96%
Host-Associated	Host-Associated	12.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.04%
Plants	Host-Associated → Plants	12.04%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.63%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.78%
Loam	Environmental → Terrestrial → Soil → Loam	34.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	22.22%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	20.37%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	16.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.26%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KanNP_Total_noBrdU_T14TCDRAFT_10163592	3300000596	Soil	MTQKERQQLLIGLGIWKLELKPELPRRAKERNLILGGRASPGFLTGILNRLTRPR*
AP72_2010_repI_A001DRAFT_10328872	3300000893	Forest Soil	MTEKERQQVLMGLGIWKLELEPAHGRRAKERKLSFDRSARPGLLTRILNRLNRXR*
JGI10216J12902_1125149802	3300000956	Soil	MTDKERQQVLIGLGIWKLELEYEPRRRAKERKLIFDGRARPGVLTRILNHLRRPR*
JGI12627J18819_104571871	3300001867	Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKAREIILGGRARPGLLAGILDRLKRRR*
JGIcombinedJ43975_100018365	3300002899	Soil	MREKERQLLIGLGIWKLELKSELGRTAKETKLILRRRATPGLLTGILNRLTRLR*
JGIcombinedJ43975_100142922	3300002899	Soil	MLQKRREEDKIEEKERQQLLAGLGIWKLELKPELGRRAKTRTLILGRRASRGLLSGILDRLKRPR*
JGI25405J52794_100155222	3300003911	Tabebuia Heterophylla Rhizosphere	MTEKERQQVLTGLGIWKLELEPALGRRGMERKLIFVRPARPGLLTQILNRLNRPR*
Ga0062593_1019188171	3300004114	Soil	MTEKERQQLLIGLGIWKMELKSALGRRAKERKLIFDYRARPGLLTGILNRLNRPP*
Ga0062589_1018473752	3300004156	Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTGILDRLKRPR*
Ga0066398_101762842	3300004268	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTGELILGGRARPGLLTKVLERLKRPR*
Ga0063356_1059570101	3300004463	Arabidopsis Thaliana Rhizosphere	MTEKERQQFLIGLGIWKLELESEPGRRGKERKLTFDGRARAGLLTRILNRLNKPR*
Ga0065704_102994531	3300005289	Switchgrass Rhizosphere	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTGILDRLKR
Ga0070690_1006143131	3300005330	Switchgrass Rhizosphere	IWKLELRPDLGQRAKTIELILGGGARPGLLTGILERLKRPR*
Ga0066388_10000019914	3300005332	Tropical Forest Soil	MTEKERQQLVIGLGIWKLELESEPGRRAKERKLIFVGRARPGLMTRILNGLKRPR*
Ga0066388_1000179928	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWRLELKSELARRANKREPIFGRRARPGLLRAILNRLKRPR*
Ga0066388_1000598735	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWRLELKPELGRRAKTRELILGGRARPGLLTKVLERLKRPR*
Ga0066388_1001847544	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKSELGRKTKTRELILGRRARLGLLTGILDRLKRRR*
Ga0066388_1002688783	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRTKTRELILGGRARPGLLTGILDRLKRPR*
Ga0066388_1006159663	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPALGRKAKDRKLTFDRPARLGLLTGILNRLIRPR*
Ga0066388_1011453042	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKAREIILGGRARPRLLAGILDRLKRRR*
Ga0066388_1020091912	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGVWKLELKSELGRRAKQRKLIFGGRARPGFLTRMLNRLKRPR*
Ga0066388_1041502492	3300005332	Tropical Forest Soil	MTEKEQQQQLLIGLGIWKLELGRGAKERKPIFRSRARPGFLAGIVDRLKRPR*
Ga0066388_1083969281	3300005332	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKSALGRRAKERKLVFDYRGRPGLLTGILNRLNRPR*
Ga0070671_1010418971	3300005355	Switchgrass Rhizosphere	MTEKERQQLLVVLGIWKLELRPDLGQRAKTIELILGGGARPGLLTGIL
Ga0070714_1015561952	3300005435	Agricultural Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELILGGRARPGLLTGILDRLKRPR*
Ga0070710_112794552	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELILGGRARPGLLTGILERLKRPR*
Ga0070711_1007836042	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGIWKLELRPDLGQRAKTIELILGGGARPGLLTGILERLKRPR*
Ga0070708_1003076712	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLVIGLGIWKLELKPELGRRAKERKLIFGGRARPGLLTGILDRLNRPR*
Ga0070708_1018489011	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLIGLGIWKLELKPELGRRAKARELILGGRRPGLLAGILDRLKRRR*
Ga0070707_1001353031	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VIGLGIWKLELKPELGRRAKERKLIFGGRARPGLLTGILDRLNRPR*
Ga0070704_1007499922	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGLWKLELRPDLGQRAKTIELILGGGARPGLLTGILERLKRPR*
Ga0066905_1005099421	3300005713	Tropical Forest Soil	ERRNKVTEKERQHVLIGLGIWKLELKPALGRRARERRLIFDYRARPRLLTGILNRLNRPR
Ga0066903_10000118513	3300005764	Tropical Forest Soil	MTEKERQQFLIGLGLWKLELESEFGRRAKERKFVFAGRARTGLLTGILSRLKRPR*
Ga0066903_1001424194	3300005764	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKSELGRRAKQRNLIFGRRARPGLLTGILNRLKKPR*
Ga0066903_1001870143	3300005764	Tropical Forest Soil	MTEKERQQVLIGLGIWKLELKPELERTAKKGELIVGVRARPGLLTDILNRLKKPR*
Ga0066903_1005694741	3300005764	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRGLILGGRARPGLLTKVLERLKRPR*
Ga0066903_1005809463	3300005764	Tropical Forest Soil	MTEKERQQLLIGLGVWKLELKSELGRRAKERKLIFARRARPGLLAGILSRLKRPR*
Ga0066903_1018601532	3300005764	Tropical Forest Soil	MTEKERQQFVIGLGIWKLELEPAHGRRAKEKKLIFDRPAKPGLLTRILNRLNRPR*
Ga0066903_1033809641	3300005764	Tropical Forest Soil	MTEKERQQLLAGLGIWKLELEAEFERKSKETKPIFGRRARPGLLTGILNRL
Ga0066903_1036916242	3300005764	Tropical Forest Soil	MTEKERHQLLIGLGIWRLELKPELGRRAKIRELILGSRSRRGFLTGILDRLKRSR*
Ga0066903_1039734521	3300005764	Tropical Forest Soil	MREKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLSRILDRVKRPR*
Ga0066903_1042082043	3300005764	Tropical Forest Soil	MTDKERQQFLIGLGIWKLELESEPGRRAKERRVIFDDRARPG
Ga0081455_106118482	3300005937	Tabebuia Heterophylla Rhizosphere	VTEKERQQLLIGLGIWKLELRSELGPRSKERKPILWGRARPGLLTGILDWLKDRR*
Ga0070716_1008435902	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRPRLGLLTGILERLKHRVNENHYRG*
Ga0070712_1001345603	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRPRLGLLTGILERLKRPR*
Ga0075425_1008585253	3300006854	Populus Rhizosphere	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTKILERLKRPR*
Ga0075434_1005767543	3300006871	Populus Rhizosphere	MTEKQRQQLLIGLGIWKLELRSELGREAKERKLILGGRARPGLLTAFLNRLTRPR*
Ga0075424_1006282962	3300006904	Populus Rhizosphere	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTKVLERLKRPR*
Ga0075424_1019976352	3300006904	Populus Rhizosphere	MTEKERQQFLIGLGIWKLELESEPGRRAKERKLIFDGSARPGLLTRILNHLKRPR*
Ga0099791_100759952	3300007255	Vadose Zone Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRARLGLLTGILERLKRPR*
Ga0114129_100430409	3300009147	Populus Rhizosphere	MTEKERQQFLIGLGIWKLELESEPGRRAKERKLSFGDRARSGLLTGILNRLKRPR*
Ga0075423_108967692	3300009162	Populus Rhizosphere	MTEKQRQQLLIGLGIWKLELRSELGRGAKERKLILGGRARPGLLTAFLNRLTRPR*
Ga0126374_103932602	3300009792	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKAREFILGGRARPGLLTRILGRLKTPR*
Ga0126384_114456862	3300010046	Tropical Forest Soil	MREKERQQLLNGLGIWKLELKAELGRRAKTRELIVAGRAKPGLLSRILDRVKRPR*
Ga0126373_101102904	3300010048	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTRILERLKKPR*
Ga0126373_105875473	3300010048	Tropical Forest Soil	MTDKERQQFLIGLGIWKLELESEPGRRAKERRVIFDDRARPGLLTRILNRLNRPR*
Ga0126373_106325952	3300010048	Tropical Forest Soil	MTEKERQQLLTGLGIWNLELKPEVGRRAKKREPIFGRRASRGLLSGILERLKRPH*
Ga0126373_111307861	3300010048	Tropical Forest Soil	VPKKRLKKERRNKMTEKERQQLLIGLGIWKLELESELGRRAKERKLHFGRRARPGLLTLILNRLNRPR*
Ga0127503_107992551	3300010154	Soil	KKNLKKERRNKMTEKERQQLLVVLGIWKLELKPDLGRRAKTIELIFGGRARLGLLTGILERLRRPR*
Ga0134063_100123753	3300010335	Grasslands Soil	MTEKERQQLLMGLGVWKLELKSELGRRAKKREMIFGRRARPGLLSEILNRLKRVG*
Ga0126370_122002342	3300010358	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRGLILGGRARPGLLSKVLERLKRPR*
Ga0126376_114886521	3300010359	Tropical Forest Soil	MTEKERQQLVIGLGIWKLELESEPGRRAKERKLIFVGRARPGLMTRIL
Ga0126376_119656802	3300010359	Tropical Forest Soil	MTEKERQRLLIGLGIWKLELKPELGRSTKARELVLGRRAGLGLLTGILDRLKRPR*
Ga0126378_100306547	3300010361	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPEVGRRAKKREPIFGRRASRGLLSGILGRLKRRH*
Ga0126378_131129501	3300010361	Tropical Forest Soil	MTEKERQQLLICLGIWKLELKPELGRRAKTRELILGGRARPGLLTRILERLKKPR*
Ga0126383_101412021	3300010398	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPERGRRAKTGELILGGRARPGLLTKVLERLKRPR*
Ga0126383_118027811	3300010398	Tropical Forest Soil	KMTEKERQQLLIGLGIWKLELKPELGRRAKTRGLILGGRARPGLLSKVLERLKRPR*
Ga0137364_112109262	3300012198	Vadose Zone Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTGELILGGRARPGLLTGILD
Ga0137382_100106926	3300012200	Vadose Zone Soil	MTEKERQQLLMGLGVWKLELKSELGRRAKKRKMIFGRRARPGLLSEILNRLKRVG*
Ga0137382_100554992	3300012200	Vadose Zone Soil	MTEKEREQLLIGLGIWKLELKPELGRRAKTGELILGGRARPGLLTGILDRLKRPR*
Ga0137376_101008403	3300012208	Vadose Zone Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTGELILGGRARPGLLTGILDRLKRPR*
Ga0137369_103292342	3300012355	Vadose Zone Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTGILDRLKGPR*
Ga0137396_104676983	3300012918	Vadose Zone Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRARLGLLTGI
Ga0126375_104492961	3300012948	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKKGELIVGVRARPGLLTDILNRLKKPR*
Ga0126369_128884701	3300012971	Tropical Forest Soil	RNKMTEKERQQLLAGLGIWKLELEAEFERKSKETKPIFGRRARPGLLTGILNRLHRPR*
Ga0163163_123267871	3300014325	Switchgrass Rhizosphere	MTEKERQQLLVVLGIWKLELRPDLGQRAKTIELILGRGARPGLLTGILERLKRPR*
Ga0134073_103654851	3300015356	Grasslands Soil	MTEKERQQLLMGLGVWNLELKSELGRRAKKREMIFGRRARPGLLSEILNRLKRVG*
Ga0132257_1016589492	3300015373	Arabidopsis Rhizosphere	MTEKERQQLLVVLGIWKLELRPDLGQRAKTIELIFGGPARLGLLAGILERLKRPR*
Ga0182041_100660562	3300016294	Soil	MTEKERQQLLAGLGIWKLELKPEPGRRAKTRELILGRRRASRGLLSGILDRITRPR
Ga0066655_100886532	3300018431	Grasslands Soil	MTEKERQQLLMGLGVWKLELKSELGRRAKKREMIFGRRARPGLLSEILNRLKRVG
Ga0193727_10266802	3300019886	Soil	MTEKERQQLLVVLGIWKLEFKPDLGRRAKTIELIFGGRARLGLLAGILERLKRPR
Ga0193726_12522782	3300020021	Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGHPRLGLLTGILERLKRPR
Ga0210406_103132162	3300021168	Soil	MTEKERQQLLVVLGIWKLELKPDLGRRAKTIELIFGGRARLGLLAGILERLKRPR
Ga0210408_110225261	3300021178	Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELILGGRARPGLLTGILERLKRPR
Ga0126371_110389083	3300021560	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKSELVRSAKEKKLIFGGRAKPGLLTGILNRLKRAG
Ga0126371_115204711	3300021560	Tropical Forest Soil	MTEKERQQLLIGLGIWKLELKSELGRRAKQRNLIFGRRARPGLLTGILNRLKKPR
Ga0126371_124380222	3300021560	Tropical Forest Soil	MTEKERQQFVIGLGIWKLELEPAAHGRREKERKFTFDRPAKPGLLTRILNRLNRPR
Ga0207684_112025662	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGIWKLELKPDLGRRAKTIELIFGGHARLGLLAGILERLKRPR
Ga0207701_104412734	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGTWKLELKPDLGRRAKTIELIFGGPARLGLLAGILERLKR
Ga0207665_101327182	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELILGGGARPGLLTGILERLKRPR
Ga0257161_11111771	3300026508	Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRARLGLLTGILERLK
Ga0209474_100639911	3300026550	Soil	MTEKERQQLLMGLGVWKLELKSELGRRAKKRKMIFGRRARPGLLSEILNRLKRVG
Ga0209622_10005457	3300027502	Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRKAKTRTLILGRRASRGLLSGILDRLKRPR
Ga0209689_14271892	3300027748	Soil	KERQQLLMGLGVWKLELKSELGRRAKKREMIFGRRARPGLLSEILNRLKRVG
Ga0170834_1075976502	3300031057	Forest Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRARLGLLTGILERLKRPR
Ga0170834_1076250232	3300031057	Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTGILDRLKRPR
Ga0170822_130042953	3300031122	Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKTRELILGGRARPGLLTGIL
Ga0170822_150543981	3300031122	Forest Soil	MTEKERQQLLVVLGIWKLELKPDLGQRAKTIELIFGGRPRLGLLTGILERLKRP
Ga0307469_102803802	3300031720	Hardwood Forest Soil	MTEKERQQLLIGLGIWKLELKSELGRKAKERNLIFGGLARPRLLTGILKRLKRPR
Ga0306918_109617441	3300031744	Soil	MTEKERQQLLAGLGIWKLELKPEPGRRAKTRELILGRRRASGGLLSGILDRLTRPR
Ga0306923_103476942	3300031910	Soil	MTEKERQQLLAGLGIWKLELKPEPGRRAKTRELILGRRRASRGLLSGILDRLTRPR
Ga0306921_106437151	3300031912	Soil	MTQKERQQSLTGLGIWKLELKSEPRRRVMEGKLILGGRVRPGLLI
Ga0310912_108661123	3300031941	Soil	MTQKERQQSLTGLGIWKLELKSEPRRRVMEGKLILGGRVRPGLLIGIFNRLKRPR
Ga0306924_103773203	3300032076	Soil	MTEKERQQLLAGLGIWKLELKPEPGRRAKTRELILDRRRASRGLLSGILDRITRPR
Ga0307471_1000863223	3300032180	Hardwood Forest Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKARELILGGRRPGLLAGILDRLKRRR
Ga0307472_1009189411	3300032205	Hardwood Forest Soil	KERRNKMTEKERQQLLVVLGIWKLELKPDLGRRAKTIELIFGGRPRLGLLTGILERLKRP
Ga0310810_100598324	3300033412	Soil	MTDKERQQLLIGLGIWKLELKSAFGRRAKERKLIFDCRARPGLLTGILNRLYRPR
Ga0310810_101704552	3300033412	Soil	MTEKERQQLLIGLGIWKLELKPELGRRAKERKLIFGCRARPGLLTGILDRLNRPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090779

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences