Metagenome Family F090797

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090797
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	45 residues
Representative Sequence	QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Number of Associated Samples	85
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.85 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	95.37 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.741 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.704 % of family members)
Environment Ontology (ENVO)	Unclassified (35.185 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 34.88% Coil/Unstructured: 65.12%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00221	Lyase_aromatic	11.11
PF13344	Hydrolase_6	11.11
PF00196	GerE	6.48
PF00857	Isochorismatase	3.70
PF00903	Glyoxalase	2.78
PF02423	OCD_Mu_crystall	1.85
PF07087	DUF1353	1.85
PF04321	RmlD_sub_bind	1.85
PF13191	AAA_16	0.93
PF00581	Rhodanese	0.93
PF13376	OmdA	0.93
PF07859	Abhydrolase_3	0.93
PF13602	ADH_zinc_N_2	0.93
PF00909	Ammonium_transp	0.93
PF00872	Transposase_mut	0.93
PF13460	NAD_binding_10	0.93
PF04961	FTCD_C	0.93
PF00296	Bac_luciferase	0.93
PF01261	AP_endonuc_2	0.93
PF11774	Lsr2	0.93
PF13424	TPR_12	0.93
PF12681	Glyoxalase_2	0.93
PF03704	BTAD	0.93
PF02317	Octopine_DH	0.93
PF02574	S-methyl_trans	0.93
PF00202	Aminotran_3	0.93
PF07730	HisKA_3	0.93
PF00743	FMO-like	0.93
PF04545	Sigma70_r4	0.93
PF02558	ApbA	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2986	Histidine ammonia-lyase	Amino acid transport and metabolism [E]	11.11
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	3.70
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	3.70
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	3.70
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	3.70
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.70
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	1.85
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	1.85
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	1.85
COG1090	NAD dependent epimerase/dehydratase family enzyme	General function prediction only [R]	1.85
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	1.85
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	1.85
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.93
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.93
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.93
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.93
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.93
COG3404	Formiminotetrahydrofolate cyclodeaminase	Amino acid transport and metabolism [E]	0.93
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.93
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.93
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	83.33 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	65.74 %
Unclassified	root	N/A	9.26 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.67 %
Unclassified	root	N/A	9.26 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.93 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.26 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.63 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	3.70 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.85 %
Euzebyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.63 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	3.70 %
unclassified Euzebyales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales	0.93 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Solirubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.63 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1.85 %
Actinophytocola	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola	0.93 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	0.93 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Solirubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter	0.93 %
Euzebyales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales → Euzebyales bacterium	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	9.26 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.63 %
Pseudonocardia cypriaca	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia cypriaca	0.93 %
Amycolatopsis vastitatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis vastitatis	0.93 %
Actinophytocola algeriensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → Actinophytocola algeriensis	0.93 %
Solirubrobacter soli	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	0.93 %
Ilumatobacter coccineus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Euzebyales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales → Euzebyales bacterium	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02HGTBC	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300005332\|Ga0066388_101417186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1208	Open in IMG/M
3300005332\|Ga0066388_102990205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli	864	Open in IMG/M
3300005332\|Ga0066388_108456163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300005435\|Ga0070714_100686310	All Organisms → cellular organisms → Bacteria	987	Open in IMG/M
3300005435\|Ga0070714_101291046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	712	Open in IMG/M
3300005436\|Ga0070713_101162650	Not Available	746	Open in IMG/M
3300005471\|Ga0070698_101560726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	612	Open in IMG/M
3300005541\|Ga0070733_11050482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300005718\|Ga0068866_11378960	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter coccineus	514	Open in IMG/M
3300005764\|Ga0066903_101586008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1240	Open in IMG/M
3300005764\|Ga0066903_101586276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1240	Open in IMG/M
3300005764\|Ga0066903_106195581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300006173\|Ga0070716_100349874	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300006175\|Ga0070712_100106588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2084	Open in IMG/M
3300006871\|Ga0075434_101413786	All Organisms → cellular organisms → Bacteria → Terrabacteria group	706	Open in IMG/M
3300009100\|Ga0075418_11201530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	822	Open in IMG/M
3300009683\|Ga0116224_10330783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300009698\|Ga0116216_10765213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300010046\|Ga0126384_10328399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1267	Open in IMG/M
3300010046\|Ga0126384_11690392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300010047\|Ga0126382_12132738	Not Available	537	Open in IMG/M
3300010048\|Ga0126373_12646002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300010048\|Ga0126373_12716449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300010359\|Ga0126376_10536712	Not Available	1091	Open in IMG/M
3300010359\|Ga0126376_10630335	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1019	Open in IMG/M
3300010359\|Ga0126376_11151117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	787	Open in IMG/M
3300010360\|Ga0126372_10852254	All Organisms → cellular organisms → Bacteria → Terrabacteria group	908	Open in IMG/M
3300010360\|Ga0126372_12499681	All Organisms → cellular organisms → Bacteria → Terrabacteria group	567	Open in IMG/M
3300010360\|Ga0126372_13318313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300010362\|Ga0126377_13592866	All Organisms → cellular organisms → Bacteria → Terrabacteria group	502	Open in IMG/M
3300010366\|Ga0126379_10908745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia cypriaca	983	Open in IMG/M
3300010366\|Ga0126379_13396043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300010376\|Ga0126381_102143571	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300010376\|Ga0126381_104281702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300010379\|Ga0136449_101348773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300011269\|Ga0137392_10998034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	688	Open in IMG/M
3300012929\|Ga0137404_10469333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinophytocola → Actinophytocola algeriensis	1119	Open in IMG/M
3300012971\|Ga0126369_12944131	All Organisms → cellular organisms → Bacteria → Terrabacteria group	557	Open in IMG/M
3300013306\|Ga0163162_13098201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300014162\|Ga0181538_10520706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300015052\|Ga0137411_1057058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
3300016270\|Ga0182036_10076669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2199	Open in IMG/M
3300016319\|Ga0182033_10042681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3007	Open in IMG/M
3300016319\|Ga0182033_10122768	All Organisms → cellular organisms → Bacteria	1957	Open in IMG/M
3300016387\|Ga0182040_11562230	All Organisms → cellular organisms → Bacteria → Terrabacteria group	561	Open in IMG/M
3300017932\|Ga0187814_10113500	All Organisms → cellular organisms → Bacteria	1002	Open in IMG/M
3300017932\|Ga0187814_10320498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300017970\|Ga0187783_10240380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1325	Open in IMG/M
3300021088\|Ga0210404_10210923	Not Available	1044	Open in IMG/M
3300021406\|Ga0210386_10519121	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1030	Open in IMG/M
3300021432\|Ga0210384_10202507	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1784	Open in IMG/M
3300021479\|Ga0210410_10208076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1752	Open in IMG/M
3300021560\|Ga0126371_10265830	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1834	Open in IMG/M
3300021560\|Ga0126371_10579587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1271	Open in IMG/M
3300021560\|Ga0126371_11281179	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300024232\|Ga0247664_1109428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	642	Open in IMG/M
3300025898\|Ga0207692_10082232	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300025898\|Ga0207692_10102583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1573	Open in IMG/M
3300025898\|Ga0207692_10904128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300025905\|Ga0207685_10145589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1067	Open in IMG/M
3300025910\|Ga0207684_10011174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7861	Open in IMG/M
3300025915\|Ga0207693_10139869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1904	Open in IMG/M
3300025916\|Ga0207663_10972794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300025949\|Ga0207667_10362190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1479	Open in IMG/M
3300027846\|Ga0209180_10333001	Not Available	867	Open in IMG/M
3300027869\|Ga0209579_10674917	Not Available	560	Open in IMG/M
3300027884\|Ga0209275_10779541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300028884\|Ga0307308_10200845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	955	Open in IMG/M
3300030494\|Ga0310037_10199511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300030511\|Ga0268241_10171733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	539	Open in IMG/M
3300031549\|Ga0318571_10111778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	906	Open in IMG/M
3300031549\|Ga0318571_10382065	All Organisms → cellular organisms → Bacteria → Terrabacteria group	546	Open in IMG/M
3300031564\|Ga0318573_10447977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300031668\|Ga0318542_10568299	All Organisms → cellular organisms → Bacteria → Terrabacteria group	591	Open in IMG/M
3300031679\|Ga0318561_10086646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1629	Open in IMG/M
3300031679\|Ga0318561_10764299	Not Available	531	Open in IMG/M
3300031680\|Ga0318574_10245187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1036	Open in IMG/M
3300031681\|Ga0318572_10980559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	502	Open in IMG/M
3300031682\|Ga0318560_10825735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300031708\|Ga0310686_101121343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	591	Open in IMG/M
3300031723\|Ga0318493_10507392	Not Available	667	Open in IMG/M
3300031724\|Ga0318500_10279556	All Organisms → cellular organisms → Bacteria → Terrabacteria group	814	Open in IMG/M
3300031736\|Ga0318501_10534990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300031744\|Ga0306918_11250358	All Organisms → cellular organisms → Bacteria → Terrabacteria group	572	Open in IMG/M
3300031765\|Ga0318554_10255317	All Organisms → cellular organisms → Bacteria → Terrabacteria group	998	Open in IMG/M
3300031768\|Ga0318509_10335328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	846	Open in IMG/M
3300031771\|Ga0318546_10195024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1381	Open in IMG/M
3300031797\|Ga0318550_10105631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1331	Open in IMG/M
3300031798\|Ga0318523_10110948	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1351	Open in IMG/M
3300031835\|Ga0318517_10102207	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1259	Open in IMG/M
3300031890\|Ga0306925_10312396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis vastitatis	1690	Open in IMG/M
3300031897\|Ga0318520_11071042	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031910\|Ga0306923_10484387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Euzebyales → unclassified Euzebyales → Euzebyales bacterium	1400	Open in IMG/M
3300031912\|Ga0306921_12117758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300031947\|Ga0310909_10160313	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1854	Open in IMG/M
3300031954\|Ga0306926_11248252	All Organisms → cellular organisms → Bacteria → Terrabacteria group	870	Open in IMG/M
3300031954\|Ga0306926_11369652	Not Available	822	Open in IMG/M
3300032009\|Ga0318563_10326398	Not Available	830	Open in IMG/M
3300032054\|Ga0318570_10601794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300032065\|Ga0318513_10688278	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	501	Open in IMG/M
3300032066\|Ga0318514_10313880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	829	Open in IMG/M
3300032076\|Ga0306924_10287550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1887	Open in IMG/M
3300032089\|Ga0318525_10031638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2579	Open in IMG/M
3300032089\|Ga0318525_10366997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300032174\|Ga0307470_10617297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	813	Open in IMG/M
3300032261\|Ga0306920_102242935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	758	Open in IMG/M
3300032770\|Ga0335085_12452272	All Organisms → cellular organisms → Bacteria → Terrabacteria group	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	4.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.59%
Plants	Host-Associated → Plants	4.63%
Aquatic	Environmental → Aquatic	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.59%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.22%
Loam	Environmental → Terrestrial → Soil → Loam	18.52%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	18.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.70%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.70%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024232	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_00839240	2189573000	Grass Soil	GSRSRSGRPVLRRGRGPSLASRRGIDAWRNVGDTSAQCLWVLRD
Ga0066388_1014171862	3300005332	Tropical Forest Soil	LVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0066388_1029902051	3300005332	Tropical Forest Soil	SSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0066388_1084561632	3300005332	Tropical Forest Soil	LVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0070714_1006863101	3300005435	Agricultural Soil	VQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070714_1012910461	3300005435	Agricultural Soil	KGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070713_1011626501	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	GAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070698_1015607261	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	LLGSGRPVLRRGETLLAGRRGIDAWRNVGESDAQCLWVLRD*
Ga0070733_110504822	3300005541	Surface Soil	QVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0068866_113789601	3300005718	Miscanthus Rhizosphere	PFAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0066903_1015860082	3300005764	Tropical Forest Soil	VLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0066903_1015862761	3300005764	Tropical Forest Soil	SGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0066903_1061955812	3300005764	Tropical Forest Soil	GRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070716_1003498741	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	PVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0070712_1001065881	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD*
Ga0075434_1014137861	3300006871	Populus Rhizosphere	PVLRRGETLLASRRGIDAWRNVGDTGAQCLWVLRD*
Ga0075418_112015301	3300009100	Populus Rhizosphere	ILRRGETLLASRRGINGWRNMGESEAQCLWVLRD*
Ga0116224_103307831	3300009683	Peatlands Soil	LIQVLLSSGRPVLRRGETLLASRRGINGWRNVGEGDAQCLWVLRD*
Ga0116216_107652131	3300009698	Peatlands Soil	AELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0126384_103283991	3300010046	Tropical Forest Soil	VLRRGETLLASRRGIDGWRNVGDTEAQCLWVLRD*
Ga0126384_116903921	3300010046	Tropical Forest Soil	APVGVVNRLVQGLAGCGRPVLRRGETLLASRRGVEGWRNVGETDAQCLWVLRD*
Ga0126382_121327382	3300010047	Tropical Forest Soil	LASGRPVLRRGETLLASRRGIDAWRNVGDTGAQCLWVLRD*
Ga0126373_126460021	3300010048	Tropical Forest Soil	IQVLLTSGRPILRRGETLLASLRGIDGWRNMGEGDAQCLWVLRD*
Ga0126373_127164491	3300010048	Tropical Forest Soil	QVLLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWVLRD*
Ga0126376_105367122	3300010359	Tropical Forest Soil	ELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126376_106303351	3300010359	Tropical Forest Soil	SGRPVLRRGETLLASRRGIDAWRNVGDTSAQCIWVLRD*
Ga0126376_111511171	3300010359	Tropical Forest Soil	QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126372_108522542	3300010360	Tropical Forest Soil	SSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0126372_124996811	3300010360	Tropical Forest Soil	GRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD*
Ga0126372_133183132	3300010360	Tropical Forest Soil	GLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126377_135928662	3300010362	Tropical Forest Soil	ASGRPVLRRGETLLASRRGIDAWRNVGDTSAQCIWVLRD*
Ga0126379_109087452	3300010366	Tropical Forest Soil	VQVLLSSGRPVLRRGETLLASRRGINGWRNMGEGDAQCLWVLRD*
Ga0126379_133960432	3300010366	Tropical Forest Soil	GLVQVQVGSGRPVLRRGETLLASRRAIDAWRNVGDTEAQCLWVLRD*
Ga0126381_1021435712	3300010376	Tropical Forest Soil	GAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126381_1042817022	3300010376	Tropical Forest Soil	LLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD*
Ga0136449_1013487733	3300010379	Peatlands Soil	VPFAHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD*
Ga0137392_109980342	3300011269	Vadose Zone Soil	IQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0137404_104693331	3300012929	Vadose Zone Soil	AELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0126369_129441311	3300012971	Tropical Forest Soil	QVMLASGRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD*
Ga0163162_130982012	3300013306	Switchgrass Rhizosphere	GVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0181538_105207061	3300014162	Bog	VVNGLVQVLLSSGRPVLRRGETLLASRRGIDAWRNVGDSSAQCLWVLRD*
Ga0137411_10570581	3300015052	Vadose Zone Soil	VVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD*
Ga0182036_100766693	3300016270	Soil	GLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0182033_100426815	3300016319	Soil	LVQVLLGSGRPVLRRGETLLATRRGIDGWRNVGESEAQCLWVLRD
Ga0182033_101227681	3300016319	Soil	SGLVKVLLSSGRPVLRRGGALLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0182040_115622301	3300016387	Soil	GRPVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD
Ga0187814_101135002	3300017932	Freshwater Sediment	VVIGSGRPVLRRGETLLATRRGIDGWRNAGDGDAQCIWVLRD
Ga0187814_103204981	3300017932	Freshwater Sediment	RPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0187783_102403802	3300017970	Tropical Peatland	GLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEIDAQCLWILRD
Ga0210404_102109231	3300021088	Soil	HKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0210386_105191211	3300021406	Soil	AHKGAELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0210384_102025074	3300021432	Soil	LLSSGRPVRRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0210410_102080763	3300021479	Soil	IQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0126371_102658304	3300021560	Tropical Forest Soil	GLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0126371_105795872	3300021560	Tropical Forest Soil	LLSSGRPVLRRGETLLASRRGIDGWRNMGESDAQCLWILRD
Ga0126371_112811793	3300021560	Tropical Forest Soil	GRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0247664_11094281	3300024232	Soil	SGLIQVLLSSGRPILRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207692_100822322	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	AVIGPPVLRRGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0207692_101025834	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	QVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207692_109041281	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207685_101455892	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	RPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0207684_100111747	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	QVLVGSGRPVLRRGETLLASRRGIDAWRNVGDSDAQCLWVLRD
Ga0207693_101398691	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207663_109727941	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	SGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0207667_103621903	3300025949	Corn Rhizosphere	VLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0209180_103330012	3300027846	Vadose Zone Soil	GSGRPVLRRGETLLASRRGIDGWRNVGETEAQCLWVLRD
Ga0209579_106749171	3300027869	Surface Soil	KGTELVGVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNVGEGDAQCLWVLRD
Ga0209275_107795411	3300027884	Soil	GVVSGLIQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0307308_102008452	3300028884	Soil	VQVVLGSGRPVLRRGETLLASRRGIDAWRNVGESDAQCLWVLRD
Ga0310037_101995112	3300030494	Peatlands Soil	LSSGRPVLRRGETLLASRRGINGWRNVGEGDAQCLWVLRD
Ga0268241_101717332	3300030511	Soil	GVELVAVVGGLVQVLLESGRPVLRRGETLLAERTAVLGWRNVGESEATLFWILRDD
Ga0318571_101117782	3300031549	Soil	VNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0318571_103820651	3300031549	Soil	SSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318573_104479771	3300031564	Soil	GRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0318542_105682992	3300031668	Soil	QVLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318561_100866461	3300031679	Soil	TELVGVVNGLVQILLSSGRPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD
Ga0318561_107642992	3300031679	Soil	QVLLSSGRPVLRSGETLLASRRGIDGWRNMGDGDAQCLWVLRD
Ga0318574_102451872	3300031680	Soil	AHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0318572_109805591	3300031681	Soil	GRPVLRRGETLLASRRGIDGWRNVGESDAQCLWVLRD
Ga0318560_108257351	3300031682	Soil	AELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0310686_1011213432	3300031708	Soil	VLLSSGRPVLRRGETLLASRRGIDGWRNAGEGDAQCLWVLRD
Ga0318493_105073921	3300031723	Soil	PVLRRGETLLASRRGIDGWRNVGESDAQCLWVLRD
Ga0318500_102795561	3300031724	Soil	AHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318501_105349901	3300031736	Soil	LLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0306918_112503582	3300031744	Soil	PVLRRGETLLASRRGIDAWRNVGDTSAQCLWVLRD
Ga0318554_102553172	3300031765	Soil	VEAPFAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318509_103353283	3300031768	Soil	VLLSSGRPVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0318546_101950243	3300031771	Soil	HKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0318550_101056311	3300031797	Soil	APFAHKGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLR
Ga0318523_101109482	3300031798	Soil	QVLLSSGRPVLRRGETHLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318517_101022072	3300031835	Soil	VVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0306925_103123961	3300031890	Soil	PVLRSGETLLASRRGIDGWRNMGEGDAQCLWILRD
Ga0318520_110710422	3300031897	Soil	DGLYWGDNVQVVPGSGPPVLRRGETLLASPCGIDAWRIAGDTSAQCLRVLRD
Ga0306923_104843871	3300031910	Soil	PVLRSGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0306921_121177582	3300031912	Soil	VQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0310909_101603133	3300031947	Soil	GLVQVIVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD
Ga0306926_112482522	3300031954	Soil	EAPFAHKGAELVGVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0306926_113696522	3300031954	Soil	PVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD
Ga0318563_103263982	3300032009	Soil	ILLSSGRPVLRRGERRAVSRRGIDGWRNVGDTDAQCIWVLRD
Ga0318570_106017942	3300032054	Soil	GVVNGLVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318513_106882781	3300032065	Soil	LVQVIVGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD
Ga0318514_103138801	3300032066	Soil	KGTELVGVVNGLVQVLLGSGRPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0306924_102875503	3300032076	Soil	ELVGVVNGLVQILLSSGRPVLRRGETLLASRRGIDGWRNVGDTDAQCIWVLRD
Ga0318525_100316381	3300032089	Soil	LVQVLLSSGRPVLRRGETLLASRRGIDGWRNMGEGDAQCLWVLRD
Ga0318525_103669971	3300032089	Soil	RPVLRRGETLLASRRGIDGWRNVGDADAQCIWVLRD
Ga0307470_106172971	3300032174	Hardwood Forest Soil	RPVLRRGETLLASRRGIDGWRNMGDGDAQCLWVLRD
Ga0306920_1022429351	3300032261	Soil	VGPGRPVLRRGETLLATRRGIDGWRNAGDSDAQCLWVLRD
Ga0335085_124522722	3300032770	Soil	ASGRPVLRRGETLLASRRGIDGWRNVGDTSAQCLWVLRD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090797

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences