Metagenome / Metatranscriptome Family F090814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090814
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	51 residues
Representative Sequence	VPTLAQIYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKQSTQPKI
Number of Associated Samples	67
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	56.07 %
% of genes near scaffold ends (potentially truncated)	48.15 %
% of genes from short scaffolds (< 2000 bps)	82.41 %
Associated GOLD sequencing projects	61
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.704 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (25.926 % of family members)
Environment Ontology (ENVO)	Unclassified (47.222 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.296 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.00% β-sheet: 0.00% Coil/Unstructured: 20.00%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13467	RHH_4	1.85
PF02308	MgtC	1.85
PF04392	ABC_sub_bind	1.85
PF06035	Peptidase_C93	1.85
PF00528	BPD_transp_1	1.85
PF00072	Response_reg	0.93
PF01381	HTH_3	0.93
PF00196	GerE	0.93
PF08734	GYD	0.93
PF14337	Abi_alpha	0.93
PF07483	W_rich_C	0.93
PF00293	NUDIX	0.93
PF00211	Guanylate_cyc	0.93
PF02735	Ku	0.93
PF00589	Phage_integrase	0.93
PF01243	Putative_PNPOx	0.93
PF13844	Glyco_transf_41	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1285	Magnesium uptake protein YhiD/SapB, involved in acid resistance	Inorganic ion transport and metabolism [P]	1.85
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.85
COG3174	Membrane component of predicted Mg2+ transport system, contains DUF4010 domain	Inorganic ion transport and metabolism [P]	1.85
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	1.85
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.93
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.93
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.70 %
Unclassified	root	N/A	46.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.70 %
Unclassified	root	N/A	46.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.70 %
Unclassified	root	N/A	46.30 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.30 %
Unclassified	root	N/A	46.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	37.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.74 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.81 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.30 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.81 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02P0O1Q	Not Available	523	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1009600	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10050373	Not Available	1083	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10116297	Not Available	560	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1028167	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1017757	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300000955\|JGI1027J12803_107421110	Not Available	661	Open in IMG/M
3300004633\|Ga0066395_10277382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	909	Open in IMG/M
3300004633\|Ga0066395_10499536	Not Available	701	Open in IMG/M
3300005332\|Ga0066388_100456305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1919	Open in IMG/M
3300005332\|Ga0066388_100775272	Not Available	1555	Open in IMG/M
3300005332\|Ga0066388_101363905	Not Available	1228	Open in IMG/M
3300005332\|Ga0066388_101797593	Not Available	1089	Open in IMG/M
3300005332\|Ga0066388_101865606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300005332\|Ga0066388_103170151	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300005332\|Ga0066388_106102643	Not Available	608	Open in IMG/M
3300005332\|Ga0066388_107341838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300005363\|Ga0008090_10046156	Not Available	532	Open in IMG/M
3300005468\|Ga0070707_100673639	Not Available	997	Open in IMG/M
3300005471\|Ga0070698_101627340	Not Available	598	Open in IMG/M
3300005713\|Ga0066905_101179808	Not Available	683	Open in IMG/M
3300005713\|Ga0066905_101202643	Not Available	677	Open in IMG/M
3300005713\|Ga0066905_101873331	Not Available	554	Open in IMG/M
3300005764\|Ga0066903_100142195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3417	Open in IMG/M
3300005764\|Ga0066903_100175959	All Organisms → cellular organisms → Bacteria → Proteobacteria	3143	Open in IMG/M
3300005764\|Ga0066903_101244610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1386	Open in IMG/M
3300005764\|Ga0066903_101995204	Not Available	1114	Open in IMG/M
3300005764\|Ga0066903_102218303	Not Available	1059	Open in IMG/M
3300005764\|Ga0066903_102447561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1010	Open in IMG/M
3300005764\|Ga0066903_103311024	Not Available	870	Open in IMG/M
3300005764\|Ga0066903_103846242	Not Available	806	Open in IMG/M
3300005764\|Ga0066903_104203006	Not Available	770	Open in IMG/M
3300005764\|Ga0066903_104234371	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005764\|Ga0066903_106693008	Not Available	599	Open in IMG/M
3300005764\|Ga0066903_106695114	Not Available	599	Open in IMG/M
3300006028\|Ga0070717_10291571	Not Available	1449	Open in IMG/M
3300006028\|Ga0070717_11991201	Not Available	523	Open in IMG/M
3300006172\|Ga0075018_10844660	Not Available	505	Open in IMG/M
3300006173\|Ga0070716_101740855	Not Available	515	Open in IMG/M
3300006854\|Ga0075425_100222079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2173	Open in IMG/M
3300006871\|Ga0075434_100570050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1151	Open in IMG/M
3300009792\|Ga0126374_10478472	Not Available	892	Open in IMG/M
3300010046\|Ga0126384_10392331	All Organisms → cellular organisms → Bacteria → Proteobacteria	1170	Open in IMG/M
3300010046\|Ga0126384_11573401	Not Available	618	Open in IMG/M
3300010046\|Ga0126384_12015237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300010048\|Ga0126373_11666720	Not Available	702	Open in IMG/M
3300010358\|Ga0126370_10087427	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300010359\|Ga0126376_11488966	Not Available	705	Open in IMG/M
3300010366\|Ga0126379_10431152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1375	Open in IMG/M
3300010366\|Ga0126379_10720161	Not Available	1092	Open in IMG/M
3300010376\|Ga0126381_103868382	Not Available	584	Open in IMG/M
3300010398\|Ga0126383_12036025	Not Available	661	Open in IMG/M
3300010863\|Ga0124850_1006246	All Organisms → cellular organisms → Bacteria → Proteobacteria	3745	Open in IMG/M
3300012201\|Ga0137365_10015811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5913	Open in IMG/M
3300012971\|Ga0126369_11434694	Not Available	780	Open in IMG/M
3300016270\|Ga0182036_10174458	Not Available	1553	Open in IMG/M
3300016341\|Ga0182035_10706868	Not Available	878	Open in IMG/M
3300016371\|Ga0182034_10345651	Not Available	1206	Open in IMG/M
3300016404\|Ga0182037_10348703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1205	Open in IMG/M
3300016404\|Ga0182037_10545502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	978	Open in IMG/M
3300016404\|Ga0182037_11442881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	609	Open in IMG/M
3300016422\|Ga0182039_10283462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1365	Open in IMG/M
3300016445\|Ga0182038_10363060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1203	Open in IMG/M
3300018431\|Ga0066655_11286051	Not Available	524	Open in IMG/M
3300021560\|Ga0126371_10539009	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1316	Open in IMG/M
3300021560\|Ga0126371_11223213	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	887	Open in IMG/M
3300021560\|Ga0126371_11585190	Not Available	781	Open in IMG/M
3300021560\|Ga0126371_12487391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	627	Open in IMG/M
3300024347\|Ga0179591_1246535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2728	Open in IMG/M
3300025939\|Ga0207665_11314926	Not Available	576	Open in IMG/M
3300027646\|Ga0209466_1064422	Not Available	740	Open in IMG/M
3300028878\|Ga0307278_10028899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2543	Open in IMG/M
3300031543\|Ga0318516_10006002	Not Available	5582	Open in IMG/M
3300031543\|Ga0318516_10007916	All Organisms → cellular organisms → Bacteria → Proteobacteria	4996	Open in IMG/M
3300031544\|Ga0318534_10547215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	660	Open in IMG/M
3300031545\|Ga0318541_10014894	All Organisms → cellular organisms → Bacteria	3595	Open in IMG/M
3300031573\|Ga0310915_10005442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7072	Open in IMG/M
3300031668\|Ga0318542_10532980	Not Available	611	Open in IMG/M
3300031719\|Ga0306917_10037126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3186	Open in IMG/M
3300031719\|Ga0306917_10256541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1341	Open in IMG/M
3300031719\|Ga0306917_11098429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300031723\|Ga0318493_10121631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1329	Open in IMG/M
3300031744\|Ga0306918_10405776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1062	Open in IMG/M
3300031744\|Ga0306918_10916241	Not Available	682	Open in IMG/M
3300031795\|Ga0318557_10259545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300031795\|Ga0318557_10366105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	663	Open in IMG/M
3300031796\|Ga0318576_10571754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300031797\|Ga0318550_10478501	Not Available	601	Open in IMG/M
3300031846\|Ga0318512_10296471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300031890\|Ga0306925_10115322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2870	Open in IMG/M
3300031897\|Ga0318520_10243608	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300031910\|Ga0306923_10335570	All Organisms → cellular organisms → Bacteria → Proteobacteria	1725	Open in IMG/M
3300031910\|Ga0306923_10428747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1502	Open in IMG/M
3300031947\|Ga0310909_10119592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2137	Open in IMG/M
3300031947\|Ga0310909_10301364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1343	Open in IMG/M
3300031954\|Ga0306926_10285048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2045	Open in IMG/M
3300031954\|Ga0306926_10438603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1609	Open in IMG/M
3300031954\|Ga0306926_10536729	All Organisms → cellular organisms → Bacteria → Proteobacteria	1434	Open in IMG/M
3300031954\|Ga0306926_12083627	Not Available	635	Open in IMG/M
3300032001\|Ga0306922_11490180	Not Available	677	Open in IMG/M
3300032009\|Ga0318563_10340178	Not Available	812	Open in IMG/M
3300032044\|Ga0318558_10034268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2163	Open in IMG/M
3300032076\|Ga0306924_10561012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1295	Open in IMG/M
3300032090\|Ga0318518_10572009	All Organisms → cellular organisms → Bacteria → Proteobacteria	577	Open in IMG/M
3300032261\|Ga0306920_100571373	All Organisms → cellular organisms → Bacteria → Proteobacteria	1674	Open in IMG/M
3300033289\|Ga0310914_10092858	All Organisms → cellular organisms → Bacteria → Proteobacteria	2582	Open in IMG/M
3300033290\|Ga0318519_10841070	Not Available	566	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.15%
Host-Associated	Host-Associated	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.22%
Plants	Host-Associated → Plants	1.85%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.22%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.85%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.74%
Loam	Environmental → Terrestrial → Soil → Loam	31.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	25.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_05092670	2070309004	Green-Waste Compost	VPTLAQIYEDRAAACTRAAEQCDDRVFRGMLISLALRWRLAAREE
AP72_2010_repI_A01DRAFT_10096003	3300000579	Forest Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRGMLISLALQWTLAAREEVAKQSTQPKI*
AF_2010_repII_A1DRAFT_100503732	3300000597	Forest Soil	VPTLAQIYEDHAAAYSRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI*
AF_2010_repII_A001DRAFT_101162972	3300000793	Forest Soil	VPTLAQIYKDHAAACTRAAEQCDDPVFRGMLISLALQWKLAAREEVTKQSTQPKI*
AP72_2010_repI_A100DRAFT_10281672	3300000837	Forest Soil	VPTQAQICEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI*
AP72_2010_repI_A001DRAFT_10177573	3300000893	Forest Soil	VPTLAQIYEDXAAACTRAAEQCDDPVFRGMLISLALQWTLAAREEVAKQSTQPKI*
JGI1027J12803_1074211102	3300000955	Soil	VPTLAQTYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAAREEGAKHSTQPKI*
Ga0066395_102773821	3300004633	Tropical Forest Soil	VPTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI*
Ga0066395_104995361	3300004633	Tropical Forest Soil	VPTLAQIYEDHAAAYSRAAEQCDDPVFRDMLISLALQWRLAAREEVAK
Ga0066388_1004563051	3300005332	Tropical Forest Soil	VPSLAQAYEDRAAAYTHAAEGCDDPVFRDILLMLALQWTLAAREEVAKQSTQPKT*
Ga0066388_1007752721	3300005332	Tropical Forest Soil	VPTLAQIYEDRAAACARAAEQCDDPVFRGMLISLGLQWRLAAREEVAKQSTQPKI*
Ga0066388_1013639054	3300005332	Tropical Forest Soil	VPTLAQIYEDHAAAYSRAAEQCDDPVFRDMLISLALQWRLAAREE
Ga0066388_1017975931	3300005332	Tropical Forest Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRGMLISLALQWRLAAREEVAKQATQPKI*
Ga0066388_1018656062	3300005332	Tropical Forest Soil	VPTLAQSYEENAAAYTRAAEQCDDPVFRNMLNSLALQWRLAAREEAAKH
Ga0066388_1031701512	3300005332	Tropical Forest Soil	VPTLAQSYEENAAAYTRAAEQCNDPVFRDMLNSLALQWRLAAREEAAKHATQPKI*
Ga0066388_1061026432	3300005332	Tropical Forest Soil	VPTQAQIYEDHAAACIHAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI*
Ga0066388_1073418382	3300005332	Tropical Forest Soil	VPTLAQSYEENAAAYTRAAEQCNDPVFRDMLNSLALQWRLAAREEAAKHA
Ga0008090_100461561	3300005363	Tropical Rainforest Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRGMLISLALQWRLAAREEVAKQSTQPKI*
Ga0070707_1006736392	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VPTLAQVYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPFAKR*
Ga0070698_1016273402	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	TRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI*
Ga0066905_1011798082	3300005713	Tropical Forest Soil	VPTLAQIYEDHAAACTRAAEQCGDPVFRGMLISLALQWRLAAREEVAKQS
Ga0066905_1012026431	3300005713	Tropical Forest Soil	VPTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI*
Ga0066905_1018733311	3300005713	Tropical Forest Soil	VPTIAQIYEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTQPKI*
Ga0066903_1001421953	3300005764	Tropical Forest Soil	VPTQAQICEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAASEEVAKQSTKPEI*
Ga0066903_1001759593	3300005764	Tropical Forest Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSMQPKI*
Ga0066903_1012446102	3300005764	Tropical Forest Soil	VPTLAEIYEDHAAACTRAAEQCDDPVFRGMLISLALQWRLAAREEAAKQSSQPKI*
Ga0066903_1019952043	3300005764	Tropical Forest Soil	QIYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREELAKQSTQPKI*
Ga0066903_1022183032	3300005764	Tropical Forest Soil	VPTLAQIYEDHAAACTRAAEQCGDPVFRGMLISLALQWRLAAREEVAKQSSQPKI*
Ga0066903_1024475614	3300005764	Tropical Forest Soil	AQIYEDHAAACTRAAEQCDDPVFRGMLISLALQWTLAAREEVAKQSTQPKI*
Ga0066903_1033110242	3300005764	Tropical Forest Soil	TQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAVREEVAKQSTQPKI*
Ga0066903_1038462422	3300005764	Tropical Forest Soil	VPTLAQTYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI*
Ga0066903_1042030062	3300005764	Tropical Forest Soil	SYEENAAAYTRAAEQCDDPVFRDMLNSLALQWRLAAREEAAKHAMQPKI*
Ga0066903_1042343712	3300005764	Tropical Forest Soil	PAVPTLAQSYEENAAAYTRAAEQCDDPVFRNMLNSLALQWRLAAREEAAKHATQKIG*
Ga0066903_1050124081	3300005764	Tropical Forest Soil	MDPAVPTLAQSYEENAAAYTRAAEQCDDPVFRNMLNSLSLQWRLAAREEAAKHATQQKSDSAL*
Ga0066903_1066930081	3300005764	Tropical Forest Soil	VPTLAQTYEDHAAAYTRAAEQCDDPVFRDTLINLALQWRLAAREEVAKHSTQPKI*
Ga0066903_1066951141	3300005764	Tropical Forest Soil	VSTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKQSTQPKI*
Ga0070717_102915711	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VPTLAQIYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI*
Ga0070717_119912011	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VPTLAQVYEDHAAAYTRAAEQCDDPVFRNMLLTLALQWRLAAQDPRETTSDLARET*
Ga0075018_108446602	3300006172	Watersheds	AEQCDDPVFRGMLISLALQWRLAAREEVAKQSSQPKIGLRSLDAQ*
Ga0070716_1017408551	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VPTLAQIYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVA
Ga0075425_1002220791	3300006854	Populus Rhizosphere	VPTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAASEEVAKQSTKPKI*
Ga0075434_1005700503	3300006871	Populus Rhizosphere	VLTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAASEEVAKQSTKPKI*
Ga0126374_104784721	3300009792	Tropical Forest Soil	VPTLAQIYEDRAAACTRAAEQCDDRVFRGMLISLALQWRLAAREEVAKQSTQPKI*
Ga0126384_103923312	3300010046	Tropical Forest Soil	VPTLAQIYEDRAAACTRAAEQCDDRVFRGMLISLALQWRLAARDEVAKQSTQPKI*
Ga0126384_115734011	3300010046	Tropical Forest Soil	TRAAEQCDDPVFRDMLISLALQWRLAACEEVAKQSTKPKI*
Ga0126384_120152371	3300010046	Tropical Forest Soil	DQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKQSTQPKI*
Ga0126373_116667201	3300010048	Tropical Forest Soil	AAACTRAAEQCGDPVFRGMLISLALQWRLAAREEVAKQSTQPKI*
Ga0126370_100874274	3300010358	Tropical Forest Soil	VPTLAQSYEENAAAYTRAAEQCDDPVFRDMLNSLALQWRLAAREEAAKHATQPNI*
Ga0126376_114889662	3300010359	Tropical Forest Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRGMLISLALQWKLAAREEVAKQSTQPKI*
Ga0126379_104311523	3300010366	Tropical Forest Soil	VPTQAQIYEDHAAACTRAAEQCDDPVFREMLISLALQWKLAAREEVAKQSTQPKI*
Ga0126379_107201611	3300010366	Tropical Forest Soil	VPTLAQIYEDHAAAYSRAAEQCDDPVFRDMLISLALQWRLAAREEVAKQSTQPKI*
Ga0126381_1038683822	3300010376	Tropical Forest Soil	MDSAVPTLAQSYEENAAAYTRAAEQCDDPVFRNMLNSLALQWRLAAREEAAKHATQ
Ga0126383_120360251	3300010398	Tropical Forest Soil	VPILAHSYEENAAAYTRAAEQCNDPVFRDMLNNLALQWRLAAREEAAKHATQPKI*
Ga0124850_10062467	3300010863	Tropical Forest Soil	VSTQAQIYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKQSTEPII*
Ga0137365_100158119	3300012201	Vadose Zone Soil	QIYEDHAAACTRAAEQCDDPVFRDVLISLALQWRLAAREEVAKQSTQPTCPVRTSR*
Ga0126369_114346941	3300012971	Tropical Forest Soil	VPTQAQIYEDHAAACTPAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI*
Ga0182036_101744582	3300016270	Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWSLAAREEVAKQSTQPKI
Ga0182035_107068682	3300016341	Soil	VPTLAQIYEDHAAAYTRAAEQCDDPVFRDMLINLALQWRLAAREEVAKHSTQPKI
Ga0182034_103456511	3300016371	Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEV
Ga0182037_103487031	3300016404	Soil	CTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0182037_105455021	3300016404	Soil	VPTQAQIYEEHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI
Ga0182037_114428811	3300016404	Soil	AAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0182039_102834622	3300016422	Soil	CSRAAEQTDDPVFRTMLLMLGLQWKLAAREETSKSSDLEDSR
Ga0182038_103630601	3300016445	Soil	AEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI
Ga0066655_112860511	3300018431	Grasslands Soil	AAYTCAAEQCDDPVFRNMLNCLALQWRLAAREEAAKHVTQKIG
Ga0126371_105390092	3300021560	Tropical Forest Soil	VPTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI
Ga0126371_112232131	3300021560	Tropical Forest Soil	DHAAACTRAAEQCDDPVFRGMLISLALQWRLAAREEVAKQSTQPKI
Ga0126371_115851901	3300021560	Tropical Forest Soil	QCDDPVFRDMLISLALQWRLAAREEVAKRSTQPKI
Ga0126371_124873911	3300021560	Tropical Forest Soil	MDPAVPTLAQSYEENAAAYTRAAEQCDDDPVFRNMLNSLALQWRLAAREEAAKHATQKIG
Ga0179591_12465353	3300024347	Vadose Zone Soil	VPTLAQIYEDHAGDCARAAEQTNDPVFRNMLLTLAFQWRLAAREQVAMQSTQPKTANRAG
Ga0207665_113149261	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	VPTLAQIYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI
Ga0209466_10644221	3300027646	Tropical Forest Soil	VPTQAQIYEDHAAACTRAAEQCDDPVFRGMLISLALQWTLAAREEVAKQSTQPKI
Ga0307278_100288993	3300028878	Soil	MPTLFQVYEDHAAACTRAAERSDDPVFRDMLFTLALQWKLAAREEAEKQSTQPKT
Ga0318516_1000600213	3300031543	Soil	VPTLAQIYEDRAAACTRAAEQCDDRVFRGMLISLALRWRLAAREEVAKQSTQPKI
Ga0318516_100079167	3300031543	Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0318534_105472151	3300031544	Soil	HAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0318541_100148948	3300031545	Soil	VPTLAQIYEDRAAACTRAAEQCDDRVFRGMLISLALQWRLAAREEVAKQSTQPKI
Ga0310915_100054428	3300031573	Soil	VPTLAQIYEDHAAACTRAAERCDDRVVRDMLISLALQWRLAAREQVAKQSTQPNI
Ga0318542_105329801	3300031668	Soil	IYEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTQPKI
Ga0306917_100371267	3300031719	Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTQPKI
Ga0306917_102565411	3300031719	Soil	ACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0306917_110984291	3300031719	Soil	QCDDPVFRDMLISLALQWKLAAREEVAKQSTQPKI
Ga0318493_101216311	3300031723	Soil	AACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0306918_104057761	3300031744	Soil	CDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0306918_109162412	3300031744	Soil	VPTLAQIYEDHAAACTRAAEQCDDQVFRDMLIRLALQWKLAAREERAKHST
Ga0318557_102595451	3300031795	Soil	AERCDDRVVRDMLISLALQWRLAAREQVAKQSTQPNI
Ga0318557_103661051	3300031795	Soil	ACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0318576_105717541	3300031796	Soil	DHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTQPKI
Ga0318550_104785011	3300031797	Soil	VPTLAQIYEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQST
Ga0318512_102964711	3300031846	Soil	CTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0306925_1011532210	3300031890	Soil	TRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0318520_102436081	3300031897	Soil	VPTQAQIYEDHAAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0306923_103355701	3300031910	Soil	HAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI
Ga0306923_104287471	3300031910	Soil	RAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0310909_101195921	3300031947	Soil	DHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0310909_103013641	3300031947	Soil	PVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0306926_102850481	3300031954	Soil	QCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0306926_104386031	3300031954	Soil	MSRRADPQIYEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTQPKI
Ga0306926_105367291	3300031954	Soil	MIRRADLAQIYQDHAAAYTRAAEQCDDPVFRDMLINLALQWRLAAREEVAKHSTQPKI
Ga0306926_120836271	3300031954	Soil	VPTLAQIYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKQSTQPKI
Ga0306922_114901801	3300032001	Soil	VPTLAQIYEDHAAACTRAAEQCDDQVFRDMLIRLALQWKLAAREERA
Ga0318563_103401783	3300032009	Soil	YEDRAAACTRAAEQCDDRVFRGMLISLALRWRLAAREEVAKQSTQPKI
Ga0318558_100342685	3300032044	Soil	QCDDPVFRDMLNSLALQWRLAAHEEVAKQSTRPKI
Ga0306924_105610124	3300032076	Soil	AACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0318518_105720091	3300032090	Soil	AAACTRAAEQCDDPVFRDMLISLALQWKLAAREEVAKQSTQPLPIAKR
Ga0306920_1005713732	3300032261	Soil	TRAAEQCDDPVFRDMLINLALQWRLAAREEVAKHSTQPKI
Ga0310914_100928584	3300033289	Soil	VPTLAQTYEDHAAAYTRAAEQCDDPVFRDMLISLALQWRLAAREEVAKHSTQPKI
Ga0318519_108410701	3300033290	Soil	YEDHAAACTRAAEQCDDPVFRDMLNSLALQWRLAAHEEVAKQSTQPKI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090814

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences