Metagenome / Metatranscriptome Family F091060

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091060
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	47 residues
Representative Sequence	MEHGKPISATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWL
Number of Associated Samples	92
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.26 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	94.44 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (75.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (14.815 % of family members)
Environment Ontology (ENVO)	Unclassified (24.074 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.778 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 28.95% β-sheet: 6.58% Coil/Unstructured: 64.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02592	Vut_1	78.70
PF00202	Aminotran_3	1.85
PF00691	OmpA	1.85
PF05899	Cupin_3	0.93
PF07883	Cupin_2	0.93
PF00563	EAL	0.93
PF02348	CTP_transf_3	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1738	Queuosine precursor transporter YhhQ, DUF165 family	Translation, ribosomal structure and biogenesis [J]	78.70
COG1083	CMP-N-acetylneuraminic acid synthetase, NeuA/PseF family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1212	CMP-2-keto-3-deoxyoctulosonic acid synthetase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1861	Spore coat polysaccharide biosynthesis protein SpsF, cytidylyltransferase family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.93
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.93
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.93
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
All Organisms	root	All Organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
cellular organisms	root	All Organisms → cellular organisms	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	24.07 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.07 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
malvids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Malvales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Malvaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Grewioideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Apeibeae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Corchorus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	75.00 %
Pelomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	15.74 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Corchorus olitorius	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus → Corchorus olitorius	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908007\|FWIRElOz_GKZ9IRQ02G2MRW	Not Available	505	Open in IMG/M
2170459012\|GOYVCMS01CRRT0	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	502	Open in IMG/M
3300000567\|JGI12270J11330_10124716	Not Available	1038	Open in IMG/M
3300001356\|JGI12269J14319_10366815	Not Available	504	Open in IMG/M
3300001593\|JGI12635J15846_10424386	Not Available	798	Open in IMG/M
3300002245\|JGIcombinedJ26739_101555190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	558	Open in IMG/M
3300004080\|Ga0062385_10559920	Not Available	716	Open in IMG/M
3300004082\|Ga0062384_101187809	Not Available	554	Open in IMG/M
3300004092\|Ga0062389_104524191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	523	Open in IMG/M
3300004635\|Ga0062388_100402215	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Malvales → Malvaceae → Grewioideae → Apeibeae → Corchorus → Corchorus olitorius	1190	Open in IMG/M
3300005436\|Ga0070713_100216741	All Organisms → cellular organisms → Bacteria → Proteobacteria	1735	Open in IMG/M
3300005530\|Ga0070679_101007366	Not Available	777	Open in IMG/M
3300005610\|Ga0070763_10355487	Not Available	816	Open in IMG/M
3300005610\|Ga0070763_10982354	Not Available	505	Open in IMG/M
3300006052\|Ga0075029_101249678	Not Available	520	Open in IMG/M
3300006059\|Ga0075017_100710378	Not Available	773	Open in IMG/M
3300006059\|Ga0075017_101192035	Not Available	596	Open in IMG/M
3300006086\|Ga0075019_10923040	Not Available	561	Open in IMG/M
3300006172\|Ga0075018_10813700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	513	Open in IMG/M
3300006173\|Ga0070716_100727535	Not Available	761	Open in IMG/M
3300007258\|Ga0099793_10490347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	610	Open in IMG/M
3300009029\|Ga0066793_10303207	Not Available	923	Open in IMG/M
3300009088\|Ga0099830_11873674	Not Available	501	Open in IMG/M
3300009701\|Ga0116228_10688282	Not Available	690	Open in IMG/M
3300009709\|Ga0116227_10968306	Not Available	640	Open in IMG/M
3300009709\|Ga0116227_11456406	Not Available	514	Open in IMG/M
3300012685\|Ga0137397_10913426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	651	Open in IMG/M
3300012924\|Ga0137413_10262607	Not Available	1190	Open in IMG/M
3300012927\|Ga0137416_10498802	Not Available	1048	Open in IMG/M
3300012944\|Ga0137410_10089999	All Organisms → cellular organisms → Bacteria → Proteobacteria	2258	Open in IMG/M
3300012944\|Ga0137410_10365774	Not Available	1156	Open in IMG/M
3300014164\|Ga0181532_10148811	Not Available	1410	Open in IMG/M
3300014168\|Ga0181534_10126590	Not Available	1295	Open in IMG/M
3300014168\|Ga0181534_10503820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	685	Open in IMG/M
3300014493\|Ga0182016_10516707	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	688	Open in IMG/M
3300014495\|Ga0182015_10107004	All Organisms → cellular organisms → Bacteria → Proteobacteria	1936	Open in IMG/M
3300014495\|Ga0182015_10922558	Not Available	546	Open in IMG/M
3300014502\|Ga0182021_11328120	Not Available	866	Open in IMG/M
3300015051\|Ga0137414_1105461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	580	Open in IMG/M
3300015203\|Ga0167650_1095047	Not Available	672	Open in IMG/M
3300015241\|Ga0137418_10695537	Not Available	780	Open in IMG/M
3300015245\|Ga0137409_10250341	Not Available	1574	Open in IMG/M
3300017948\|Ga0187847_10322944	Not Available	844	Open in IMG/M
3300018035\|Ga0187875_10545634	Not Available	613	Open in IMG/M
3300018044\|Ga0187890_10337471	Not Available	845	Open in IMG/M
3300018085\|Ga0187772_10111295	All Organisms → cellular organisms → Bacteria → Proteobacteria	1775	Open in IMG/M
3300019786\|Ga0182025_1146762	Not Available	976	Open in IMG/M
3300019786\|Ga0182025_1380201	Not Available	2382	Open in IMG/M
3300020061\|Ga0193716_1001922	All Organisms → cellular organisms → Bacteria → Proteobacteria	11912	Open in IMG/M
3300020580\|Ga0210403_11235304	Not Available	574	Open in IMG/M
3300020582\|Ga0210395_10915214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	651	Open in IMG/M
3300020582\|Ga0210395_11049962	Not Available	602	Open in IMG/M
3300020582\|Ga0210395_11420592	Not Available	506	Open in IMG/M
3300021086\|Ga0179596_10126752	Not Available	1192	Open in IMG/M
3300021168\|Ga0210406_10610708	Not Available	850	Open in IMG/M
3300021401\|Ga0210393_10249122	Not Available	1440	Open in IMG/M
3300021401\|Ga0210393_11696806	Not Available	500	Open in IMG/M
3300021402\|Ga0210385_10939649	Not Available	664	Open in IMG/M
3300021403\|Ga0210397_11180022	Not Available	595	Open in IMG/M
3300021406\|Ga0210386_11423998	Not Available	580	Open in IMG/M
3300021474\|Ga0210390_10045855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3584	Open in IMG/M
3300021475\|Ga0210392_10283885	Not Available	1182	Open in IMG/M
3300021479\|Ga0210410_10294177	Not Available	1457	Open in IMG/M
3300021559\|Ga0210409_10036368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4694	Open in IMG/M
3300021559\|Ga0210409_10884649	Not Available	767	Open in IMG/M
3300025939\|Ga0207665_10410189	Not Available	1033	Open in IMG/M
3300027058\|Ga0209111_1034090	Not Available	639	Open in IMG/M
3300027064\|Ga0208724_1037057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	505	Open in IMG/M
3300027567\|Ga0209115_1092610	Not Available	687	Open in IMG/M
3300027680\|Ga0207826_1208843	Not Available	525	Open in IMG/M
3300027860\|Ga0209611_10439430	Not Available	741	Open in IMG/M
3300027889\|Ga0209380_10403722	Not Available	801	Open in IMG/M
3300027894\|Ga0209068_10947156	Not Available	510	Open in IMG/M
3300027903\|Ga0209488_11067093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	554	Open in IMG/M
3300027911\|Ga0209698_11063926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	601	Open in IMG/M
3300027915\|Ga0209069_11054680	Not Available	502	Open in IMG/M
3300028036\|Ga0265355_1015593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	643	Open in IMG/M
3300028747\|Ga0302219_10454159	Not Available	503	Open in IMG/M
3300028773\|Ga0302234_10417617	Not Available	574	Open in IMG/M
3300028813\|Ga0302157_10609575	Not Available	562	Open in IMG/M
3300028906\|Ga0308309_10863783	Not Available	786	Open in IMG/M
3300029636\|Ga0222749_10660860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	572	Open in IMG/M
3300029917\|Ga0311326_10298715	Not Available	818	Open in IMG/M
3300029945\|Ga0311330_11068144	Not Available	592	Open in IMG/M
3300029952\|Ga0311346_11141205	Not Available	614	Open in IMG/M
3300029954\|Ga0311331_11407913	Not Available	574	Open in IMG/M
3300030007\|Ga0311338_11201245	Not Available	719	Open in IMG/M
3300030054\|Ga0302182_10306747	Not Available	669	Open in IMG/M
3300030399\|Ga0311353_10588128	Not Available	975	Open in IMG/M
3300030399\|Ga0311353_10808546	Not Available	799	Open in IMG/M
3300030399\|Ga0311353_11363693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	579	Open in IMG/M
3300030520\|Ga0311372_12285028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas	618	Open in IMG/M
3300030524\|Ga0311357_10507165	Not Available	1122	Open in IMG/M
3300030524\|Ga0311357_11497437	Not Available	571	Open in IMG/M
3300030618\|Ga0311354_10817669	Not Available	878	Open in IMG/M
3300030646\|Ga0302316_10406045	Not Available	547	Open in IMG/M
3300030739\|Ga0302311_10252731	Not Available	1304	Open in IMG/M
3300030862\|Ga0265753_1078751	Not Available	635	Open in IMG/M
3300030906\|Ga0302314_11239216	Not Available	696	Open in IMG/M
3300030906\|Ga0302314_11785913	Not Available	538	Open in IMG/M
3300031128\|Ga0170823_10708981	Not Available	688	Open in IMG/M
3300031231\|Ga0170824_109221415	Not Available	931	Open in IMG/M
3300031236\|Ga0302324_101185781	Not Available	1019	Open in IMG/M
3300031708\|Ga0310686_109795789	Not Available	547	Open in IMG/M
3300031708\|Ga0310686_117806763	All Organisms → cellular organisms → Bacteria → Proteobacteria	1865	Open in IMG/M
3300031715\|Ga0307476_10629698	Not Available	795	Open in IMG/M
3300031718\|Ga0307474_10966199	Not Available	674	Open in IMG/M
3300031753\|Ga0307477_10041702	All Organisms → cellular organisms → Bacteria → Proteobacteria	3152	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.37%
Host-Associated	Host-Associated	4.63%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.70%
Aquatic	Environmental → Aquatic	16.67%
Plants	Host-Associated → Plants	4.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.26%
Peat	Environmental → Terrestrial → Peat	19.44%
Freshwater	Environmental → Aquatic → Freshwater	9.26%
Sediment	Environmental → Aquatic → Sediment	7.41%
Peat Moss	Host-Associated → Plants → Peat Moss	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	19.44%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.41%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	19.44%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.52%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.41%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	3.70%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	14.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.11%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.63%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.63%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.70%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	3.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.85%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908007	Soil microbial communities from sample at FACE Site Metagenome WIR_ElevOz2	Environmental	Open in IMG/M
2170459012	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grass	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009701	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015203	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-3c, vegetated patch on medial moraine)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027058	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027064	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027860	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG (SPAdes)	Host-Associated	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028036	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028813	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030054	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_3	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIRElOz_03762840	2124908007	Soil	MDQGKQSSAMSPLVDFDAVCQKVREAIEPARVHAVSLHDNKGEVLWLTESSMGP
N56_03186500	2170459012	Grass Soil	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISLHDAHGDLLWL
JGI12270J11330_101247161	3300000567	Peatlands Soil	MEQGKPFSASESPLVDFDGVCQKVRAAIDTTRVHAVSL
JGI12269J14319_103668152	3300001356	Peatlands Soil	MEQGKPFSASESPLVDFDGVCQKVRAAIDTTRVHAVSLHDEKGDVL
JGI12635J15846_104243862	3300001593	Forest Soil	MEHGKTISATENPLIDFDAICQKVRAAVEPARAHAVSLHDEH
JGIcombinedJ26739_1015551902	3300002245	Forest Soil	MEHGKPYSATQSPLVDFDAVCQNVRAAVEPARAYAVSLHDEQGDVLWLSES
Ga0062385_105599201	3300004080	Bog Forest Soil	MEHGKPYGATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDETGDV
Ga0062384_1011878092	3300004082	Bog Forest Soil	MEQGKPFSTTESPLVDFDAVCQKMRAAIEPARAHAISLHDERGD
Ga0062389_1045241912	3300004092	Bog Forest Soil	MEQGNPFSAAESPLVDFDAVCKKVRAAVEPARAHAVSLHDENGEVLWLSESSMGP
Ga0062388_1004022151	3300004635	Bog Forest Soil	MDQGKPLMQSDSPLVDFDAVCQKVRAAVEPNRTHAVSLHDEAG
Ga0070713_1002167411	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISLHDARGDLLWLTESSMGPDEH
Ga0070679_1010073662	3300005530	Corn Rhizosphere	MEHGKPLSATDGPRVDFDAVCQQVRAAVEPARAQAISLHDE
Ga0070763_103554871	3300005610	Soil	MEHGKPFSATDGPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVLWLSESSM
Ga0070763_109823541	3300005610	Soil	MEQGKPFGETESPLVDFDAVCQKVRTAVEPARAHAVSLHDEKGDVLWLSESSM
Ga0075029_1012496783	3300006052	Watersheds	MEQNKPFSGADSPPADFGSVCEKVRAALEPARVHAISIHDDKGD
Ga0075017_1007103782	3300006059	Watersheds	MELGKPFAATESSPVEFDAVCQKVRAAIEAARVHSVSLHDEKGDLLWLTESSMGPD
Ga0075017_1011920353	3300006059	Watersheds	MEQGSPSSATEQPLVDFDALCQKLRAAVEPARAHAVSMHDEHGDVLW
Ga0075019_109230402	3300006086	Watersheds	METGKHRTLTDSPPVDFDALCQKVRAALEPARAHSISLHDETGDLLWLTESSMGPD
Ga0075018_108137002	3300006172	Watersheds	MEHGKTFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHDNRGEVLWLSESTM
Ga0070716_1007275352	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISLHDAHGDLL
Ga0099793_104903472	3300007258	Vadose Zone Soil	MEHGKPISATDNPLVDLDAVCQQLRAAVEPARAHAVSLHDEHGDLLWLSES
Ga0066793_103032072	3300009029	Prmafrost Soil	MEQGNPFSATEQSLVDFDALCQKVRAAVEPARAHAVSLHDEHGDVLW
Ga0099830_118736741	3300009088	Vadose Zone Soil	MDQGKQLSAMSPLVDFGAVCQRVREAVEPARVHAVSLHDNKGEVPWLTESSMGPDEHN
Ga0116228_106882822	3300009701	Host-Associated	MEPGKNLTANDAALVDYDGVCQKIRLAMEPMRAHAISLHDEEGDLLWLTESS
Ga0116227_109683062	3300009709	Host-Associated	MEQGKSFSTADSPPLDFDAVCQNVRAAMEPARAHAVSLHDRQGEVLWLSESSMGPDEHDAVRA
Ga0116227_114564062	3300009709	Host-Associated	MEQGKPISTADAPPLDFDAVCQNVRAAMEPARAHAVSLH
Ga0137397_109134261	3300012685	Vadose Zone Soil	MERGKPLMQSENPLVDFDAVCQNVRTAVEPNRTHAVSLHDESGEVLWLSESSM
Ga0137413_102626072	3300012924	Vadose Zone Soil	MEQGKPLSATDSPLVDFDAVCQKVRAAIEPARVHALSLHDEK
Ga0137416_104988021	3300012927	Vadose Zone Soil	MEHGKPISATDNPLVDFGAVCQQVRAAVEPARAHAVSLHDEHGDVLWL
Ga0137410_100899991	3300012944	Vadose Zone Soil	MEHGKPFSAADGPLVDFDAVCQKVRAALEPARAHAISLHDEHGD
Ga0137410_103657741	3300012944	Vadose Zone Soil	MEQGKPISATDNPLVDFDAVCQQVRAAVEPARAHAVSLHD
Ga0181532_101488113	3300014164	Bog	MEQGKPFSATESPLVDFDAVCQKVRAAVEPARAHAVSLH
Ga0181534_101265901	3300014168	Bog	MEHGKPHSSTDNPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDLLWLSESSM
Ga0181534_105038202	3300014168	Bog	MVLTSTAAGSMEQGKPLSASQSPLVDFDAVCQKVRAALEPARAHAVSLHDEKGDVLWLSESSM
Ga0182016_105167072	3300014493	Bog	MEQGKPFSATESPLVDFDAVCQKVRAALEPARAHAVSLHDESGDLLWLSESSMGPDEH
Ga0182015_101070043	3300014495	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESSMGPD
Ga0182015_109225582	3300014495	Palsa	MEHGTPFSATESPLVDFDAVCQKVRTAVEPARAHAVSLH
Ga0182021_113281202	3300014502	Fen	MEHGKPFSAADGPLVDFDAVCQKVRAAVEPARAHAVSLHDEH
Ga0137414_11054611	3300015051	Vadose Zone Soil	MEQGKPLMQSDSPLVDFDAVCQKVRAAVEPNRAHAVVSLHDEAGE
Ga0167650_10950472	3300015203	Glacier Forefield Soil	MEHGNPNSATDSPLVDYDAVCQKVRAAVEPNRVHAVSLHDEHGDVLWLS
Ga0137418_106955372	3300015241	Vadose Zone Soil	MEQGKPLSATDSPLVDFDAVCQKVRAAIEPARVHALSLHDEKGDVLWLTE
Ga0137409_102503413	3300015245	Vadose Zone Soil	MEHGKPFSAADGPLVDFDAVCQKVRAALEPARAHAISLHDEHGDLLW
Ga0187847_103229442	3300017948	Peatland	MEQGKPFNGPRSPFVDFDGVCQKVRAAVEPARALAVSLHDEKGDVLWLTESSMGPDEH
Ga0187875_105456342	3300018035	Peatland	MEQGKPFSATESPLVDFDAVCQKVRAAVEPARAHAVSLHDQNADVLWLSE
Ga0187890_103374712	3300018044	Peatland	MEQGKPFRTTQSPLVDFDAVCQKVRAAIEPARAHAISLHDERGDVLWLSESTMGPD
Ga0187772_101112951	3300018085	Tropical Peatland	MEQGKPFTETESPLVDFDAVCQKVRAAVEPARAHAVSLHDEKGD
Ga0182025_11467621	3300019786	Permafrost	MEQGKPLMQSNSPLVDFDGICEKVRAAIEPNRTHAVSLHDEAG
Ga0182025_13802011	3300019786	Permafrost	GKPLSSSDTAPVDYGAVCQNVRAALEPARAHAISLHDSWAMFCG
Ga0193716_100192213	3300020061	Soil	MEQGTPLMQSDSPLVDFDTVCQKVRAAVEPNRTHAVSLH
Ga0210403_112353041	3300020580	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHD
Ga0210395_109152141	3300020582	Soil	MDQGKPLTATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELGDVLWLSE
Ga0210395_110499621	3300020582	Soil	MDQGKPLMATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELGDVLWLSESSMGPD
Ga0210395_114205922	3300020582	Soil	MEQGKPFSETESPLVDFDAVCQKVRTAVEPARAHAVSLHDEKGDVLWLS
Ga0179596_101267522	3300021086	Vadose Zone Soil	MEHGKPISATDNPLVDFDAVCQKVRAAVEPARAYAVSLHDEHGDVLWLSESSM
Ga0210406_106107081	3300021168	Soil	MERGKPLMQSDSPLVDFDAVCQKVRAAVEPNRTHAVSL
Ga0210393_102491221	3300021401	Soil	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGD
Ga0210393_116968061	3300021401	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLH
Ga0210385_109396492	3300021402	Soil	MEQGKPFSATESPLVDFDAVCQRVRAAVEPARAHAV
Ga0210397_111800222	3300021403	Soil	MEQGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHDETGDVLWLSESS
Ga0210386_114239981	3300021406	Soil	MEHGKPISATDHPLVDFDAVCQKVRAAVEPARAYAVSLHDEHGDVLWLSESSMG
Ga0210390_100458555	3300021474	Soil	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGDVLWLSESS
Ga0210392_102838851	3300021475	Soil	MERGKPLMQSDSPLVDFDAVCQKVRAAVEPNRTHAVSLHDESGDVLWLSESSMG
Ga0210410_102941771	3300021479	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVLWLS
Ga0210409_100363681	3300021559	Soil	MDQGKPLMATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELG
Ga0210409_108846491	3300021559	Soil	MDQGKQSSAMSPLVDFDAVCQKVREAIEPARVHAVSLHDNKGEV
Ga0207665_104101891	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MEHGKPLSAADGPLVDFDAVCQKVRAALEPARAHAISL
Ga0209111_10340901	3300027058	Forest Soil	MERGRPLMQSESPLVDFDAVCQKVRAAIEPNRTHAISLHDEAGEM
Ga0208724_10370571	3300027064	Forest Soil	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESSMGP
Ga0209115_10926102	3300027567	Forest Soil	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGDVLWLSES
Ga0207826_12088432	3300027680	Tropical Forest Soil	MATDSPLVDFDAICQRVRAAMEPNRTHAISLHDET
Ga0209611_104394301	3300027860	Host-Associated	MDQGKRLTASGAPLVHYDAVCESVRAALEPARAHAISLHDVKGD
Ga0209380_104037221	3300027889	Soil	MDQGKPLMATDSPLVDFDAVCQKVRAAVEPARTHAVSLHDELGDVLWLSESSMGPDEH
Ga0209068_109471562	3300027894	Watersheds	MEQGSPSSATQQPLVDFDALCQNLRAAVEPARAHAVSM
Ga0209488_110670932	3300027903	Vadose Zone Soil	MEHGKPISATDSPLVDFDAVCQKVRAAVEPARAHAVSL
Ga0209698_110639262	3300027911	Watersheds	MEQNKPFSGADSPPADFGSVCEKVRAALEPARVHAISIHDDKGDVLWL
Ga0209069_110546801	3300027915	Watersheds	MEHGKPFSTADAPFVDFDAVCQKLRTAVEPARAHAVSLH
Ga0265355_10155932	3300028036	Rhizosphere	MEQGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHDETGDVL
Ga0302219_104541592	3300028747	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARARSEE
Ga0302234_104176171	3300028773	Palsa	MEHGKPISATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWL
Ga0302157_106095751	3300028813	Bog	MEQGNPSTAPDGALVDFDAVCQRVRAAMEPARAHAVSLHDERGDILWLTESSMGPDE
Ga0308309_108637831	3300028906	Soil	MEQGKPFSTTQSPLVDFDAVCQKVRTAVEPARAHAVSLHDEKGDVLWLSESS
Ga0222749_106608602	3300029636	Soil	MDQGKPLTATDSPLVDFDAVCQKVRAAVEPARTHA
Ga0311326_102987152	3300029917	Bog	MEHGKPISATDSPLVDFDAVCHKVRAALEPARAHAVSLHDEHGDV
Ga0311330_110681441	3300029945	Bog	MEPGNQLNVSDAPLVDFDGVCQKIRAAVEPMRVHAVSLHDEEGDLLWLTESSMGPDEH
Ga0311346_111412052	3300029952	Bog	MENGIPFGATDGALVDFDAVCQKVRAAVEPARAHAVSLHDEHGEV
Ga0311331_114079132	3300029954	Bog	MEHGKSRSASEHSLDFGGVCQNIRAAVDSIRVHAVSLHDEKGKVLWMT
Ga0311338_112012451	3300030007	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVS
Ga0302182_103067472	3300030054	Palsa	MEQGNPLTATDGALVNFDAVCQRVRAAVEPARAHSVSLHDERGDVLWLT
Ga0311353_105881282	3300030399	Palsa	MDHGKPFSATDGPLVDFDAVCQKVRTAVEPARAHAVS
Ga0311353_108085462	3300030399	Palsa	MEQGKPFSAMQSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESS
Ga0311353_113636931	3300030399	Palsa	MDQVKPVSAPESPLIDFDAVCQKVRAAIDSVRIYS
Ga0311372_122850282	3300030520	Palsa	MEQGKPLMQSESPLVDFDAICQKVRAAVEPNRTHAVSLHDETGDVLWLSESSM
Ga0311357_105071653	3300030524	Palsa	MEQGKPFSAMQSPLVDFDAVCQKVRAAVEPARAHAVSLHDEN
Ga0311357_114974371	3300030524	Palsa	MEHGKPISATDSPLVDFDAVCQKIRAAVEPARAHAVSLHDEHGDVLW
Ga0311354_108176692	3300030618	Palsa	MEQGKPFSAMQSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWL
Ga0302316_104060453	3300030646	Palsa	MEQGKPLNVMESPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVL
Ga0302311_102527313	3300030739	Palsa	MEQGKPLMQSESPLVDFDAVCQKVRAALEPNRTHAVSLHDE
Ga0265753_10787512	3300030862	Soil	MEQGKPFSATDGPLVDYDAVCQKVRVAVEPARAHAVS
Ga0302314_112392162	3300030906	Palsa	MEHGKPISATDSPLVDFDAVCQKIRAAVEPARAHAVSLHDEHGDVLWLSESSM
Ga0302314_117859131	3300030906	Palsa	MDQGKPLLASDSPLVDFNAICQKVRAAVEPARAHAVSL
Ga0170823_107089811	3300031128	Forest Soil	MERGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHD
Ga0170824_1092214151	3300031231	Forest Soil	MEQGKPLMQSESPLVDFDAVCQKVRAAVEPNRTHAVSLHDETGDVLWLSESSMGPDE
Ga0302324_1011857812	3300031236	Palsa	MEHGKPFSATDSPLVDFDAVCQKVRAAVEPARAHAVSLHDENGDVLWLSESSMG
Ga0310686_1097957892	3300031708	Soil	MEHGKPFSTTDGPLVDFDAVCQKVRAAVEPARAHAVSLHDELGDVLW
Ga0310686_1178067631	3300031708	Soil	MDHGKPFSATDGPLVDFDAVCQKVRAAVEPARAHAVSLHDEHGDVLWLS
Ga0307476_106296981	3300031715	Hardwood Forest Soil	MDQGKQFSAMSPLVDFDAVCQKVREAIEPARIHAVSL
Ga0307474_109661992	3300031718	Hardwood Forest Soil	MEQGKPLMQSDSPLVDFGAVCEKVRAAVEPNRTHAVSLHDEAGDV
Ga0307477_100417021	3300031753	Hardwood Forest Soil	MEHGKPISATDNPLVDFDVVCQKVRAAVEPARAHA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091060

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences