Metagenome / Metatranscriptome Family F091489

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091489
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	71 residues
Representative Sequence	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Number of Associated Samples	65
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	72.90 %
% of genes near scaffold ends (potentially truncated)	45.79 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.271 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.645 % of family members)
Environment Ontology (ENVO)	Unclassified (60.748 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.486 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 78.87% β-sheet: 0.00% Coil/Unstructured: 21.13%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12833	HTH_18	10.28
PF12625	Arabinose_bd	9.35
PF04392	ABC_sub_bind	5.61
PF13505	OMP_b-brl	3.74
PF13229	Beta_helix	3.74
PF06725	3D	2.80
PF03401	TctC	0.93
PF14525	AraC_binding_2	0.93
PF16884	ADH_N_2	0.93
PF06776	IalB	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.61
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.93
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
All Organisms	root	All Organisms	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
cellular organisms	root	All Organisms → cellular organisms	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	39.25 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.67 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.54 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.54 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	6.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.61 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	4.67 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	6.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.54 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	4.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.93 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	6.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.54 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	4.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
Oscillatoriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae	0.93 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.54 %
Pyxidicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	4.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
unclassified Cellulomonas	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas	0.93 %
Phormidium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.54 %
Pyxidicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	4.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
unclassified Phormidium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium → unclassified Phormidium	0.93 %
Cellulomonas sp. URHD0024	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. URHD0024	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	6.54 %
Pyxidicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	4.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.67 %
Phormidium sp. FACHB-592	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium → unclassified Phormidium → Phormidium sp. FACHB-592	0.93 %
Cellulomonas sp. URHD0024	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. URHD0024	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10126101	Not Available	624	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1016322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1412	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1073321	Not Available	603	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1074091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	599	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10014078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1929	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10113314	Not Available	569	Open in IMG/M
3300004268\|Ga0066398_10200080	Not Available	527	Open in IMG/M
3300004633\|Ga0066395_10050873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1834	Open in IMG/M
3300004633\|Ga0066395_10063450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1678	Open in IMG/M
3300005332\|Ga0066388_101262259	Not Available	1269	Open in IMG/M
3300005332\|Ga0066388_104058595	Not Available	746	Open in IMG/M
3300005363\|Ga0008090_10024143	Not Available	891	Open in IMG/M
3300005363\|Ga0008090_15364126	Not Available	556	Open in IMG/M
3300005363\|Ga0008090_15680805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → unclassified Cellulomonas → Cellulomonas sp. URHD0024	526	Open in IMG/M
3300005518\|Ga0070699_100886202	Not Available	817	Open in IMG/M
3300005713\|Ga0066905_102305099	Not Available	503	Open in IMG/M
3300005764\|Ga0066903_100005249	All Organisms → cellular organisms → Bacteria → Proteobacteria	11198	Open in IMG/M
3300005764\|Ga0066903_100062033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4683	Open in IMG/M
3300005764\|Ga0066903_100303748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2528	Open in IMG/M
3300005764\|Ga0066903_101575190	Not Available	1244	Open in IMG/M
3300005764\|Ga0066903_104098894	Not Available	780	Open in IMG/M
3300005764\|Ga0066903_104192859	Not Available	771	Open in IMG/M
3300005764\|Ga0066903_104344534	Not Available	757	Open in IMG/M
3300005764\|Ga0066903_107651770	Not Available	556	Open in IMG/M
3300006871\|Ga0075434_102353132	Not Available	535	Open in IMG/M
3300006938\|Ga0081245_1444555	Not Available	629	Open in IMG/M
3300009792\|Ga0126374_10379906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	980	Open in IMG/M
3300010043\|Ga0126380_11532176	Not Available	592	Open in IMG/M
3300010046\|Ga0126384_10955946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777	Open in IMG/M
3300010046\|Ga0126384_11586873	Not Available	616	Open in IMG/M
3300010047\|Ga0126382_11326970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300010048\|Ga0126373_10168136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2100	Open in IMG/M
3300010360\|Ga0126372_10026784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3530	Open in IMG/M
3300010360\|Ga0126372_10083824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2330	Open in IMG/M
3300010366\|Ga0126379_10072401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Oscillatoriaceae → Phormidium → unclassified Phormidium → Phormidium sp. FACHB-592	2946	Open in IMG/M
3300010366\|Ga0126379_12368176	Not Available	631	Open in IMG/M
3300012971\|Ga0126369_11254891	Not Available	831	Open in IMG/M
3300012971\|Ga0126369_12550449	Not Available	596	Open in IMG/M
3300016294\|Ga0182041_10016376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4408	Open in IMG/M
3300016319\|Ga0182033_10029921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3463	Open in IMG/M
3300016319\|Ga0182033_10125977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1936	Open in IMG/M
3300016341\|Ga0182035_10248354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1435	Open in IMG/M
3300016341\|Ga0182035_10895412	Not Available	782	Open in IMG/M
3300016357\|Ga0182032_10595765	Not Available	919	Open in IMG/M
3300016371\|Ga0182034_10017475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4202	Open in IMG/M
3300016371\|Ga0182034_10380052	Not Available	1154	Open in IMG/M
3300016387\|Ga0182040_10908003	Not Available	731	Open in IMG/M
3300016404\|Ga0182037_10015749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4500	Open in IMG/M
3300016404\|Ga0182037_11299526	Not Available	641	Open in IMG/M
3300016404\|Ga0182037_12051441	Not Available	514	Open in IMG/M
3300016422\|Ga0182039_10537501	Not Available	1014	Open in IMG/M
3300021560\|Ga0126371_10079984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3204	Open in IMG/M
3300021560\|Ga0126371_11291655	Not Available	864	Open in IMG/M
3300027654\|Ga0209799_1150122	Not Available	530	Open in IMG/M
3300027874\|Ga0209465_10249116	Not Available	889	Open in IMG/M
3300031543\|Ga0318516_10039144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2540	Open in IMG/M
3300031543\|Ga0318516_10206183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1136	Open in IMG/M
3300031545\|Ga0318541_10097598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1574	Open in IMG/M
3300031561\|Ga0318528_10078154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1712	Open in IMG/M
3300031561\|Ga0318528_10304030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300031572\|Ga0318515_10635004	Not Available	567	Open in IMG/M
3300031573\|Ga0310915_10203796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1383	Open in IMG/M
3300031573\|Ga0310915_10447321	Not Available	918	Open in IMG/M
3300031573\|Ga0310915_10455219	Not Available	909	Open in IMG/M
3300031679\|Ga0318561_10675557	Not Available	568	Open in IMG/M
3300031680\|Ga0318574_10507374	Not Available	707	Open in IMG/M
3300031682\|Ga0318560_10027573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2659	Open in IMG/M
3300031682\|Ga0318560_10337544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	813	Open in IMG/M
3300031713\|Ga0318496_10083376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1698	Open in IMG/M
3300031719\|Ga0306917_10019078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4189	Open in IMG/M
3300031719\|Ga0306917_10425649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1038	Open in IMG/M
3300031719\|Ga0306917_10786547	Not Available	746	Open in IMG/M
3300031736\|Ga0318501_10136654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1252	Open in IMG/M
3300031744\|Ga0306918_10092246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2135	Open in IMG/M
3300031744\|Ga0306918_10291324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	1255	Open in IMG/M
3300031744\|Ga0306918_10564155	Not Available	892	Open in IMG/M
3300031768\|Ga0318509_10482899	Not Available	693	Open in IMG/M
3300031769\|Ga0318526_10261756	Not Available	708	Open in IMG/M
3300031778\|Ga0318498_10094994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1350	Open in IMG/M
3300031781\|Ga0318547_10202082	Not Available	1187	Open in IMG/M
3300031792\|Ga0318529_10040860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1966	Open in IMG/M
3300031792\|Ga0318529_10089642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1378	Open in IMG/M
3300031794\|Ga0318503_10138464	Not Available	783	Open in IMG/M
3300031805\|Ga0318497_10552344	Not Available	646	Open in IMG/M
3300031833\|Ga0310917_10189689	Not Available	1371	Open in IMG/M
3300031835\|Ga0318517_10230241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	836	Open in IMG/M
3300031879\|Ga0306919_10018991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4110	Open in IMG/M
3300031879\|Ga0306919_10178533	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	1566	Open in IMG/M
3300031879\|Ga0306919_10417182	Not Available	1031	Open in IMG/M
3300031879\|Ga0306919_10720258	Not Available	768	Open in IMG/M
3300031879\|Ga0306919_11515842	Not Available	504	Open in IMG/M
3300031890\|Ga0306925_10009582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	9227	Open in IMG/M
3300031890\|Ga0306925_10759776	Not Available	1009	Open in IMG/M
3300031896\|Ga0318551_10668237	Not Available	601	Open in IMG/M
3300031897\|Ga0318520_10141920	Not Available	1386	Open in IMG/M
3300031910\|Ga0306923_10758349	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	1075	Open in IMG/M
3300031941\|Ga0310912_11084264	Not Available	612	Open in IMG/M
3300031941\|Ga0310912_11465248	Not Available	514	Open in IMG/M
3300031942\|Ga0310916_11357272	Not Available	583	Open in IMG/M
3300031945\|Ga0310913_10150054	Not Available	1610	Open in IMG/M
3300031946\|Ga0310910_10162279	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	1716	Open in IMG/M
3300032001\|Ga0306922_10277284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1802	Open in IMG/M
3300032001\|Ga0306922_10359128	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	1562	Open in IMG/M
3300032039\|Ga0318559_10053094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1702	Open in IMG/M
3300032059\|Ga0318533_10346627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1081	Open in IMG/M
3300032059\|Ga0318533_11160614	Not Available	565	Open in IMG/M
3300032066\|Ga0318514_10441194	Not Available	692	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.07%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.18%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.61%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006938	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome P72I A001 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101261011	3300000597	Forest Soil	TMTDIDRLIDELVRRLRGRPMLEIVTAARQIENRMRDLYLNEALKKYAADRHEEPSRHVVAALHRLLVPYSF*
AF_2010_repII_A100DRAFT_10163223	3300000655	Forest Soil	MTDIEKLIDELVLRLRGRPILEIVAAARQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGX*
AF_2010_repII_A100DRAFT_10733211	3300000655	Forest Soil	ELVRRLRGRPMLEIVTAARQIENRMRDLYLNEALKKYAADRHEEPSRHVVAALHRLLVPYSF*
AF_2010_repII_A100DRAFT_10740913	3300000655	Forest Soil	ELVRRLRGRPILEIVAAARQIENRVRDLYLNEALRKYAADHREEPSPHVVAALHRLLAS*
AF_2010_repII_A001DRAFT_100140781	3300000793	Forest Soil	MTDIEKLIDELVLRLRGRPILEIVAAARQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGF*
AF_2010_repII_A001DRAFT_101133142	3300000793	Forest Soil	MTDIEKLIDELVLRLRGRPILEIVAAARQIEDRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGF*
Ga0066398_102000802	3300004268	Tropical Forest Soil	MTDIDRLIDELIRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRL
Ga0066395_100508732	3300004633	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMPEVMTAAQQIEKRVRDLYLNEALKKYAADRHKEPSRHVVAALHRLLVPYSF*
Ga0066395_100634503	3300004633	Tropical Forest Soil	MTDIDRLIDELIRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF*
Ga0066388_1012622591	3300005332	Tropical Forest Soil	MTEIDRLIDELVRRLRGRPVLEIVTAARQIENRMRDLYLHEALRKYAADRREEPSPHVVAALRRLLGTTR*
Ga0066388_1040585952	3300005332	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIETRVRDLYLHEALRKYAADRRKEPSRHVVAALRRLLAPCGF*
Ga0008090_100241432	3300005363	Tropical Rainforest Soil	MTDIEKLIDELVLRLRGRPILEIVAAARQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGL*
Ga0008090_153641261	3300005363	Tropical Rainforest Soil	MRFLRTGKANTMTDIDRLIDELVRRLRGRPMLEIVTAARQIENRIRDLYLNEALKKYAADRHKEPSRHVVAALHRLLVPYSF*
Ga0008090_156808051	3300005363	Tropical Rainforest Soil	MTDIEKLIDELVRRLRGRPILEIVAAAQQIENRVRDLYLDEALRKYAADHREEPSRHVVAALHRLLAPCGF*
Ga0070699_1008862022	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF*
Ga0066905_1023050991	3300005713	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMVEIVTAARRIEDRMRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0066903_1000052492	3300005764	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRRKEPSRHVVAALRRLLAPCGF*
Ga0066903_1000620335	3300005764	Tropical Forest Soil	MTDIDKLIDKLVRGLRGRPILEIITAAQQIENRVRDLYLHEALMKYAADRREEPSRHVVAALHRLFASQRRGGISILGTCLYAD*
Ga0066903_1003037485	3300005764	Tropical Forest Soil	MTDIDRLIDELIRRLRGRPVLEIMTAARQMENRMRDLYLQEALRKYTADRREEPSPHVVAALRRLLAPCGF*
Ga0066903_1015751902	3300005764	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADHREEPSRHVVAALRRLLAPCGF*
Ga0066903_1040988943	3300005764	Tropical Forest Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKFDNRVSDLYLHKALRKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH*
Ga0066903_1041928591	3300005764	Tropical Forest Soil	NTMTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF*
Ga0066903_1043445342	3300005764	Tropical Forest Soil	RKANTMTDIDRLIDELVRRLRGRPMLEIVTAARQIENRMRDLYLNEALKKYAADRHEEPSRHVVAALHRLLVPYSF*
Ga0066903_1076517702	3300005764	Tropical Forest Soil	MTDIEKLIDELVRRLRGRPILEIVAAAQQIENRVRDLYLDEALRKYAADHREEPSRH
Ga0075434_1023531321	3300006871	Populus Rhizosphere	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRH
Ga0081245_14445552	3300006938	Tropical Rainforest Soil	MTDIEKLIDELVRRLRGRPILEIVAAARQIENRVRDLYLNEALRKYAADHREEPSPHVVAALHRLLAS*
Ga0126374_103799062	3300009792	Tropical Forest Soil	MTEIDRLIDELVRRLRGRPVLEIVTAARQIENRMRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF*
Ga0126380_115321761	3300010043	Tropical Forest Soil	MTDIEKLIDELVRRLRGRPILEIVAAARQIENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGF*
Ga0126384_109559461	3300010046	Tropical Forest Soil	MRFVRTWKANTMTDIEKLIDELVRRLRGRPILEIVAAARQIENRVRDLYLNEASRKYGADHREEPSRHVVAALRRLLALCDS*
Ga0126384_115868731	3300010046	Tropical Forest Soil	MTDIDGLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAP
Ga0126382_113269701	3300010047	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRMRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF*
Ga0126373_101681362	3300010048	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF*
Ga0126372_100267841	3300010360	Tropical Forest Soil	MTDIDRLIDELARRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF*
Ga0126372_100838243	3300010360	Tropical Forest Soil	MTDIDRLIDELARRLRGRPMLEIVTAARQIETRVRDLYLHEALRKYAADRRKEPSRHVVAALRRLLAPCGF*
Ga0126379_100724013	3300010366	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPVLEIVTAARQMENRVRDLYLQKALRKYAADWGEEPSPHVVAALRRLLGTTQ*
Ga0126379_123681761	3300010366	Tropical Forest Soil	MTDINRLIDELVRRLRGRPMLEIVTAARQIENRMRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0126369_112548911	3300012971	Tropical Forest Soil	RLRRRPILEIVAAARQIENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGF*
Ga0126369_125504491	3300012971	Tropical Forest Soil	MTDIDRLIDELVRRLRGRPVLEIVTAARQMENRVRDLYLQKALRKYAADWGEEPLPHVVAALRRLLGTTQ*
Ga0182041_100163762	3300016294	Soil	MTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVVASLRRVFTPCEL
Ga0182033_100299216	3300016319	Soil	MTDTDRLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLDKALRKYAADRREEPSRHV
Ga0182033_101259773	3300016319	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVP
Ga0182035_102483542	3300016341	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALRKYAADHREKPSRHVVAALHRVFDSVRALGNLSRH
Ga0182035_108954122	3300016341	Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRLRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0182032_105957652	3300016357	Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRMRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0182034_100174751	3300016371	Soil	MTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHAVA
Ga0182034_103800523	3300016371	Soil	MTDIDRLIDELVRRLRGRPMLEIMTAARQIENRVRNLYLHEALRKYAADRREEPSRHVVAALRRLLAPC
Ga0182040_109080031	3300016387	Soil	NANTMTDIEKLIDELVLRLRGRPVLEIVAAAWQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGL
Ga0182037_100157495	3300016404	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARKIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF
Ga0182037_112995261	3300016404	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALRKYAADRREEPSRHVVAALHRVFDSVRALGNLSR
Ga0182037_120514411	3300016404	Soil	RTWRANTMTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSGLYLHKALRKYAADHREKPSRHVVAALHRVFDSVRALGNLSRL
Ga0182039_105375013	3300016422	Soil	MTDVDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALGRLLAPCGF
Ga0126371_100799843	3300021560	Tropical Forest Soil	MTDIDRLIDELARRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF
Ga0126371_112916552	3300021560	Tropical Forest Soil	MTDIEKLIDELVLRLRGRPILEIVAAARQIENRVRDLYLNEALRNYAADHREEPSRHVVAALHRLLASRGF
Ga0209799_11501221	3300027654	Tropical Forest Soil	MTDIDRLIDELIRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVA
Ga0209465_102491163	3300027874	Tropical Forest Soil	LIDELVRRLRGRPVLEIVTAARQIENRMRDLYLHEALRKYAADRREEPSPHVVAALRRLLGTTR
Ga0318516_100391442	3300031543	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF
Ga0318516_102061832	3300031543	Soil	MTDIDRLIDELVRRLRGRPMLEIMTAARQIENRVRNLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0318541_100975981	3300031545	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0318528_100781541	3300031561	Soil	MTDIDRLIDELARRLRGRPMLEVMTAARKIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF
Ga0318528_103040301	3300031561	Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALHRVFDSVRALGNTPLV
Ga0318515_106350041	3300031572	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKAFKKYAADRREEPSRHVVAALRRLLAPCGF
Ga0310915_102037963	3300031573	Soil	MTDIEKLIDELVLRLRGRPVLEIVAAAWQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGL
Ga0310915_104473211	3300031573	Soil	VRRLRGRPILEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0310915_104552192	3300031573	Soil	MTDVDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0318561_106755571	3300031679	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALRKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0318574_105073741	3300031680	Soil	LSGHGKANTMTDTDRLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALRKYAADRREEPSRHVVAALHRVFDSVRALGSLSRH
Ga0318560_100275733	3300031682	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLIPYSF
Ga0318560_103375442	3300031682	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKAFKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0318496_100833763	3300031713	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVA
Ga0306917_100190782	3300031719	Soil	MTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVVAALRRVFTPCEL
Ga0306917_104256491	3300031719	Soil	DIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0306917_107865472	3300031719	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKALRKYAADHREKPSRHIVAALHRVFDSVRALGNLSRH
Ga0318501_101366543	3300031736	Soil	LVLRLRGRPVLEIVAAAWQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRG
Ga0306918_100922461	3300031744	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSGLYLHKALRKYAADHREKPSRHVVA
Ga0306918_102913241	3300031744	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKALRKYAADHREKPSRHVVAALHRVFDSVRALGNLSRH
Ga0306918_105641551	3300031744	Soil	MTDVDRLIDELVRRLRGRPMLEIVTAARQIENRLRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0318509_104828991	3300031768	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALKKYAADRREEPSRHVVAALHRVFDSVRALGSLSRH
Ga0318526_102617563	3300031769	Soil	MTDIEKLIDELVLRLRGRPVLEIVAAAWQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRL
Ga0318498_100949941	3300031778	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0318547_102020822	3300031781	Soil	LSGHGKANTMTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVVAA
Ga0318529_100408601	3300031792	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYS
Ga0318529_100896422	3300031792	Soil	TMTDIDRLIDELARRLRGRPMLEVMTAARKIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYSF
Ga0318503_101384641	3300031794	Soil	VRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0318497_105523441	3300031805	Soil	DIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALRKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0310917_101896891	3300031833	Soil	LSGHGKANTMTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVVAALRRV
Ga0318517_102302411	3300031835	Soil	MTDIDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0306919_100189911	3300031879	Soil	MTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVVAALRRVFDSVRALGRLPRH
Ga0306919_101785333	3300031879	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKALRKYAADHREKPSRHIVAALHRVFDSVRAL
Ga0306919_104171821	3300031879	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALRKYAADRREEPSRHVVAALHRVFDSVRALGN
Ga0306919_107202582	3300031879	Soil	MTDIDRLIDELVRRLRGRPILEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALGRLLAPCGF
Ga0306919_115158421	3300031879	Soil	CGHRVRFVRTWRANTMTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0306925_1000958211	3300031890	Soil	MTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHAVAALRRVFTPCEL
Ga0306925_107597763	3300031890	Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALGRLLAPCGF
Ga0318551_106682371	3300031896	Soil	MTDIDRLIDELVRRLRGRPMLEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVVAALRRLLAPCGF
Ga0318520_101419201	3300031897	Soil	MTDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALKKYAADRREEPSRHVVAALHRVFD
Ga0306923_107583491	3300031910	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKALRKYAADHREKPSRHVVAALHRVFDSVRALGN
Ga0310912_110842641	3300031941	Soil	CVRTWNANTMTDIEKLIDELVLRLRGRPVLEIVAAAWQVENRVRDLYLNEALRKYAADHREEPSRHVVAALHRLLASRGL
Ga0310912_114652481	3300031941	Soil	LSGHGKANTMTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVV
Ga0310916_113572721	3300031942	Soil	ELIRRLRGRPILEIVKVARKFDNRVSDLYLHKAFKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0310913_101500541	3300031945	Soil	LSGHGKANTMTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHAVAALRRVFTPCEL
Ga0310910_101622791	3300031946	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKALRKYAADHREKPSRHIVAALHRVFDSVRALGN
Ga0306922_102772841	3300032001	Soil	MTDIDRLIDELVRRLRGRPILEIVTAARQIENRVRDLYLHEALRKYAADRREEPSRHVV
Ga0306922_103591281	3300032001	Soil	MTDIDKLIEELIRRLRGRPIQEVVTVARKLDNRVSDLYLHKALRKYAADHREKPSRHVVAALHRVFDSVRAL
Ga0318559_100530941	3300032039	Soil	MTDVDRLIDELVRRLRGRPMLEVMTAARQIENRVRDLYLNEALRKYAADRHKEPSRHVVAALHRLLVPYS
Ga0318533_103466271	3300032059	Soil	TDIDKLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKAFKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH
Ga0318533_111606141	3300032059	Soil	LSGHGKANTMTDTDRLIEELIRRLRGRPILEIVRVARKFDNRVSNLYLHKALRKYAADRRKEPSRHVVAALRRVFDSVRALGRLPRH
Ga0318514_104411941	3300032066	Soil	EHAAVGCVLSGHGKANTMTDTDRLIEELIRRLRGRPILEIVKVARKFDNRVSDLYLHKALKKYAADRREEPSRHVVAALHRVFDSVRALGNLSRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091489

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences