Basic Information | |
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Family ID | F091901 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 60 residues |
Representative Sequence | MKPHPEMIEGPEAFTRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKPKVKRSR |
Number of Associated Samples | 86 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 59.43 % |
% of genes near scaffold ends (potentially truncated) | 23.36 % |
% of genes from short scaffolds (< 2000 bps) | 68.22 % |
Associated GOLD sequencing projects | 83 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (71.963 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (14.019 % of family members) |
Environment Ontology (ENVO) | Unclassified (37.383 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (38.318 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 35.23% β-sheet: 0.00% Coil/Unstructured: 64.77% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Peatland Bog Peatland Soil Watersheds Soil Vadose Zone Soil Surface Soil Peatlands Soil Arctic Peat Soil Soil Grasslands Soil Soil Forest Soil Soil Tropical Peatland Fen Bog Prmafrost Soil Palsa Permafrost Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Palsa Peat Soil Biofilm Populus Rhizosphere Avena Fatua Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12270J11330_100661624 | 3300000567 | Peatlands Soil | MSTDHHRLRSLPECVEGLEAAARFDALVRKVLSVPHDEIMRREEEYKQRSVMNPRRRGPKRKLKPSA* |
Ga0058899_114498681 | 3300004631 | Forest Soil | SDPETKFTGCIEGPEATRRFDALVRKVLSVPREEILRREALYKKQSLANPNRRGPKRKVKRSAS* |
Ga0058899_121264902 | 3300004631 | Forest Soil | MKSEPATSSPNAIEGTEAAMRFDTLVRKVLSVPHNEIMRREAEYKRQSLANPNRRGPKPKAKR* |
Ga0070706_1002166512 | 3300005467 | Corn, Switchgrass And Miscanthus Rhizosphere | MMDFVKPKPEYEEGPQVWKRFDTLVRKVLSVPHDEIMRREAEYKRQSAMNPNRRGPKPKVKPSA* |
Ga0070707_1008069691 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MKPNAENIEGPEAARLFDTLVRKVLSVPREEILRREAEYKRQSAMNPNRRGPKKKHKS* |
Ga0070735_100654483 | 3300005534 | Surface Soil | MAYHTIMKAHPDEGPETAARFDALVRKVLSVPHEEIMRREAEYQKQAKQNPHRRGPKPKAKR* |
Ga0080027_103882712 | 3300005993 | Prmafrost Soil | MKTPTEIIEGPEAKARFDSLLRMVLSVSHDESMRREAEYKRESATNPN* |
Ga0066652_1009401802 | 3300006046 | Soil | GPQAATRFDAMVRKLLSVPHAEIQRREAEYRKQSAANPKRRGPKPKHAS* |
Ga0075028_1000235742 | 3300006050 | Watersheds | VKPQPETVEGPDAPARFDVLVRKVLSVPHEEIMRREAEYKRQSAMNPHRRGPKPKRKR* |
Ga0075029_10000094615 | 3300006052 | Watersheds | MKPNVEMIQEPEASVRFDTLVRKVLSIPRKEIMRREAEYKRQSALNPRRRGPKKKRDQSFSHK* |
Ga0075521_102416101 | 3300006642 | Arctic Peat Soil | MKPKETAEGPEAAIRFDALVRKVLSIPHDEIMRRKAEYKRQSAANPNRRGPFVPFLFVSV |
Ga0075520_11109154 | 3300006795 | Arctic Peat Soil | MKAKPEYVEGPEAAARFDALVRKVLAVPHTEIVRREAEYRRQSALNPHRRGPKPKVKPSA |
Ga0066710_1017246372 | 3300009012 | Grasslands Soil | MPVEDHHRLPECNEGPEVAKRFDALVRKVLAVPHDENVRREAEYKRHSALNPNRRGPKPKIKPSA |
Ga0066709_1030145931 | 3300009137 | Grasslands Soil | MKPHPEMIEGPEAFKRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPKRRGPKPKGKASVPRA* |
Ga0114129_131580602 | 3300009147 | Populus Rhizosphere | TFSCHHVGMKPHPEKIEGPEAAARFDAIVRKVLSVPHDEIMRREAEYKRQSAMNANRRGPKRKIKPSA* |
Ga0116225_12013032 | 3300009524 | Peatlands Soil | MNPRPEMIEGPEAAARFDALVRKVLSVPHEEIMRREAAYQRQAARNPNRRGPKPKVTRKRARGSRITPFK* |
Ga0116133_10955402 | 3300009623 | Peatland | MSMKPSSEIIEGPEAVARFDALVRRVLSVPHAEIMRREEKYKRQSLANPNRRGPK |
Ga0116125_10036624 | 3300009628 | Peatland | MNGKPDRVEDPEVAARFDALVRRVLSVPHEEIIRREAEYKRQSAMNPNRRGPKRRAKSE* |
Ga0116135_12730612 | 3300009665 | Peatland | MKQQDIEGTGAAARFEALVRRVLSVPHEVVMRREAEYKRQSLLNPNRRGPKPKRMRPNAA |
Ga0116101_11144522 | 3300009759 | Peatland | MNGKRGTIIETEAAARFDAIVRKVLSVPHEEIMRREAEYRRQSALNPNRRGPKRKTKPEN |
Ga0116134_10316064 | 3300009764 | Peatland | MKQPDAEGAEAAARFDALVRKVLSVPHEEIMRREAEYKRQSAMNPHRRGPKPK |
Ga0116134_12001782 | 3300009764 | Peatland | MDAKQADEGADVATRFDALVRKVLSVPHEEIMRREAEYKRQSAMSPTRRGPKRKAKT* |
Ga0116223_104871631 | 3300009839 | Peatlands Soil | PMKPQTETVEGPEAAIRFDTLVRKVLSVPHSEIMRREAEYKRQSALNPKRRGPKPKVKPSSVSPDAART* |
Ga0136449_10001626320 | 3300010379 | Peatlands Soil | MKQQPEYVEGPEATARFDALVRKVLSVPHAEIMRREAEYKQRSNENPHKRGPKPKCKDS* |
Ga0136449_1002489063 | 3300010379 | Peatlands Soil | MIEGPEATARFDALVRKVLSVPHEEIMRREAEYQRQAAPNPNRGGPKRTERAKKKG* |
Ga0137382_110377091 | 3300012200 | Vadose Zone Soil | MKREPQPVNGPETMARFDAIVRKVLSVSHEEIMRREAEYKRQADLNPNKRGPKPKAR* |
Ga0137366_101647563 | 3300012354 | Vadose Zone Soil | MKPKPEYVEGPEAAARFDTLVRKVLSVSHEEIMRREAEYKRQSAANPHRRGPKPKVKPSA |
Ga0137385_116597051 | 3300012359 | Vadose Zone Soil | MKPHPEMIEGPEAFKRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPKRRGPKRKPKR* |
Ga0137360_115544431 | 3300012361 | Vadose Zone Soil | PKPEYEEGPQVLKRFDALVRKVLSVPHEEIVRREAEYKRQSALNSHRRGPKPKVKPSA* |
Ga0137361_115558791 | 3300012362 | Vadose Zone Soil | MKPKPEYEEGPQVLKRFDALVRKVLSVPHEEIVRREAEYKRQSALNSHRRGPKPKVKPSA |
Ga0150984_1164581981 | 3300012469 | Avena Fatua Rhizosphere | MKAKPEYVEGPEAATRFDAFVRKILSVPHSEIVKREAEYKRQSTANPNRRGPKPKRKLR* |
Ga0181539_10459873 | 3300014151 | Bog | MKAKAEYAEGPEVAAWFDVLVRKVLSVPHDEIVRREAEYKRLSALNPHRRGPKPKFK* |
Ga0181539_10981973 | 3300014151 | Bog | MKPKPEYVEGPESALRFDALVRRVLSVPHDQIMRREAEYKRLSALNPHRRGPKPKAK* |
Ga0181539_13374212 | 3300014151 | Bog | MMELMKSKTEYVEGPEAAARFDALVRKVLSVPHTEIMRREADYRRLSALNPHRRGPKPKAK* |
Ga0181517_100053149 | 3300014160 | Bog | MSMKPSSEIIEGPEAVARFDALVRRVLSVPHAEIMRREEKYKRQSLANPNRRGPKPKAKVK* |
Ga0181532_101570831 | 3300014164 | Bog | MKPHPEPIEGPEASARFDALVRQVLSVPHAEIMRREAEYQKQSQENPNRRGPKPKVKPSV |
Ga0181526_105728642 | 3300014200 | Bog | MVARMKPHPEPIEGPEASARFDALVRQVLSVPHAEIMRREAEYQKQSQENPNRRGPKPKVKPSV* |
Ga0182014_100645342 | 3300014491 | Bog | MDMKPLEQSEGQAAFERFDALVRKVLSVPHSEIMRREAEYKKQSDANPHKRGPKRKIKPSAS* |
Ga0182013_101582732 | 3300014492 | Bog | MVARMKPHPEPIEGPEAAARFDALVRQVLSVPHAEIMRREAEYKRQSDANPHKRGPKTQKSANDSRT* |
Ga0182015_102714952 | 3300014495 | Palsa | MDGKQPDVEGAEVAARFDALVRKVLSVPHEGIMRREAEYKRQSLLNPQRRGPKPKIKS* |
Ga0182024_102054552 | 3300014501 | Permafrost | MKTHTETIEGPEAWTRFDALVTAVMKVPHSVIVEREAEYKRQAALNPKRRGPKRKPKPSTSDHAEATN* |
Ga0182024_103132544 | 3300014501 | Permafrost | DMIYGMMESMKQTGTIEGTEAAARFDALLQKVLSVSRAEIMRREAEYQREAAKNPHRRGPKPKAKH* |
Ga0182024_108029862 | 3300014501 | Permafrost | MKANPEPIEGPEASKRFDALVRKVLSVPHDEIMRREAEYKRQSALNPNRRGPKPKGKAGN |
Ga0182021_100173387 | 3300014502 | Fen | MRDRTQESTEGPQAASRFDALVRKVLSVPHAEIMRREAEYKRQSLANPNRRGPKPKLKPASSLPTA* |
Ga0181519_104098461 | 3300014658 | Bog | MSMKPSSEIIEGPEAVARFDALVRRVLSVPHAEIMRREEKYKRQSLANPNR |
Ga0182027_122926281 | 3300014839 | Fen | MNKAMKTEPERMEGVEAMERFNALVRKVLSVPREEIMRREAEYRRLAALNPHKRGPKPKAG* |
Ga0180066_10208671 | 3300014873 | Soil | MKLKPEFLEGPEAAARFNALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKPKRPTT* |
Ga0180069_10456181 | 3300014882 | Soil | TIEGPEAYRRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKRKVKPSAFPGPGA |
Ga0181509_11174001 | 3300016701 | Peatland | GPEAVARFDALVRRVLSVPHAEIMRREEKYKRQSLANPNRRGPKPKAKVK |
Ga0181505_106139441 | 3300016750 | Peatland | EASARFDALVRQVLSVPHAEIMRREAEYQKQSQENPNRRGPKPKVKPSV |
Ga0181505_110315921 | 3300016750 | Peatland | PVKPEYIEGPEAAARFDAFVRQVIAVPHEEIMRREAEYRRKVALNPRKRGPKPKAKPSEQ |
Ga0187847_103550672 | 3300017948 | Peatland | MKPSTNAVEGPEAAKRFVALVRKELSVPHEEIVRREANYKRQSLTNPNRRGPKRKAKS |
Ga0187781_102265622 | 3300017972 | Tropical Peatland | MKSEPEPVNGPDAMARLDVLVRKVLTVPHAEIMRREGEYKRKSDANPSKRGPKRKP |
Ga0187857_100118045 | 3300018026 | Peatland | MKQPDAEGAEAAARFDALVRKVLSVPHEEIMRREAEYKRQSAMNPHRRGPKPKVKPK |
Ga0187867_100133304 | 3300018033 | Peatland | MSMKPSSEIIEGPEAVARFDALVRRVLSVPHAEIMRREEKYKRQSLANPNRRGPKPKAKV |
Ga0187875_103957261 | 3300018035 | Peatland | MKPPSPPCISGKTEAEFPESQEAAARFDALVRRVLSVPHEEIMRREAEYKRQSALNPNRRGPKRKVKSQ |
Ga0187855_101046193 | 3300018038 | Peatland | MNEKQPDIEGPEAAARFDALVRKVLSVPHEEIVRREAEYKRQSLLNPHRRGPKLKVKAK |
Ga0187859_100458243 | 3300018047 | Peatland | MNGKPDRVEDPEVAARFDALVRRVLSVPHEEIIRREAEYKRQSAMNPNRRGPKRRAKSE |
Ga0210407_108767402 | 3300020579 | Soil | MKPHTPEYIEGPEAYQRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKRKANPAAQ |
Ga0210399_110612542 | 3300020581 | Soil | MKSPSEKTEGPEPPSRFDVLVRKVLSVPHDEIMRREAEYKRQSALNPKRRGPKRKAKD |
Ga0210406_100409653 | 3300021168 | Soil | MKPHTPEYIEGPEAYQRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKPKVESKRMTKG |
Ga0210406_100482774 | 3300021168 | Soil | MKPHPEMIEGPEAFTRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKPKVKRSR |
Ga0187846_102727532 | 3300021476 | Biofilm | MIEGHEAFARFDALVRKVLSVPHKEIMRREAEYKKQSAANPRRRGPKTKRKGSRRA |
Ga0213853_112545433 | 3300021861 | Watersheds | GRVKPQPETVEGPDAPARFDVLVRKVLSVPHEEIMRREAEYKRQSAMNPHRRGPKPKRKR |
Ga0242677_10878811 | 3300022713 | Soil | MAIDQLSAIEGPEAAKRFDAMVRKVLTVPHSVIVEREAEYKRQSLANPNRRGPKRRVNP |
Ga0242671_11290561 | 3300022714 | Soil | MPATPNSDAIEGPEAAKRFDAMVRKVLAVPHSVIMEREAEYKRQSMANPNRRGPKPK |
Ga0224550_10226192 | 3300022873 | Soil | MDGKQPDVEGAEVAARFDALVRKVLSVPHEGIMRREAEYKRQSLLNPQRRGPKPKIKS |
Ga0224545_10017673 | 3300022881 | Soil | MGFMKPHPENEGPEAAKQFDALVRKVLSVPHEEIMRREAEYKRQSLANPRRRGPKPKANA |
Ga0224555_10148104 | 3300023088 | Soil | MVARMKPHPEPIEGPGAAARFDALVRQVLSVPHAEIMRREAEYQRQSQANPHRRGPKSKVKPSSS |
Ga0179589_103625092 | 3300024288 | Vadose Zone Soil | MESDPERVNGPETMARLDGIVRHVLTISHEEIKRREEEYKRQASLNPKRRGPKPRIK |
Ga0208827_10324363 | 3300027641 | Peatlands Soil | MSTDHHRLRSLPECVEGLEAAARFDALVRKVLSVPHDEIMRREEEYKQRSVMNPRRRGPKRKLKPSA |
Ga0209517_100541433 | 3300027854 | Peatlands Soil | MNPRPEMIEGPEAAARFDALVRKVLSVPHEEIMRREAAYQRQAARNPNRRGPKPKVTRKRARGSRITPFK |
Ga0209517_105073751 | 3300027854 | Peatlands Soil | MKQQPEYVEGPEATARFDALVRKVLSVPHAEIMRREAEYKQRSNENPHKRGPKPKCKDS |
Ga0209380_106807131 | 3300027889 | Soil | MKPYTPEMIEGPEAFQRFDALVRKVLSVPHEEIMRREAEYKRQSAMNPNRRGPKRKEKTKAQT |
Ga0209067_1000089715 | 3300027898 | Watersheds | MKPNVEMIQEPEASVRFDTLVRKVLSIPRKEIMRREAEYKRQSALNPRRRGPKKKRDQSFSHK |
Ga0209698_100133092 | 3300027911 | Watersheds | MNGKPETIEGPEVAAAFDALVRKVLSVPHDEIMRREAEYKRQSALNPHRRGPKPKLPASPVTDFEE |
Ga0209168_101015273 | 3300027986 | Surface Soil | MAYHTIMKAHPDEGPETAARFDALVRKVLSVPHEEIMRREAEYQKQAKQNPHRRGPKPKAKR |
Ga0311340_100139335 | 3300029943 | Palsa | MVSRADEGTEAAARFDALMRKVLSVPREEIVCREAEYKRQSALDPNRRGSKPKDKHA |
Ga0311339_100579115 | 3300029999 | Palsa | MVSRADEGTEAAARFDALMRKVLSVPREEIMCREAEYKRQSALDPNRRGSKPKDKHA |
Ga0311339_104026581 | 3300029999 | Palsa | TIEGPEAAARFDALVRKVLSVPHSEIMRREEEYQRQSLANPKRRGPKRKVLKPSA |
Ga0311338_104350893 | 3300030007 | Palsa | MVSRADEGTAAAARFDALMRKVLSVPREEIMCREAEYKRQSALDPNRRGSKPKDKHA |
Ga0311353_102322213 | 3300030399 | Palsa | MVSRADEGTEAAARFDALMRKVLSVPREEILCREAEYKRQSALDPNRRGSQPKDKHA |
Ga0302183_101818431 | 3300030509 | Palsa | AARFDALMRKVLSVPREEIMCREAEYKRQSALDPNRRGSKPKDKHA |
Ga0311354_113550302 | 3300030618 | Palsa | MVSRADEGTEAAARFDALMRKVLSVPREEIVCREAEYKRQSALDPNRRGSQPKDKHA |
Ga0170824_1014253962 | 3300031231 | Forest Soil | MNRQDETLEGPEAAARFDTLVRKVLSVPHSEIMRREAEYKWQAERNPNKRGPKPKAK |
Ga0302325_106070473 | 3300031234 | Palsa | MDNGNMKTDPQETIEGPEAAARFDALVRKVLSVPHAEIMRRESQYKKQSMENPNRRGPKPKKA |
Ga0302325_106683692 | 3300031234 | Palsa | MKSKPEYIEGPEVTTRFDALVRKVLAVPHTEIMRREADYKKQSLANPKRRGPKPKRPPR |
Ga0302325_132747192 | 3300031234 | Palsa | MKQQPEQIEGPEATARFDALVRKVLSVPHAEIMRREAEYKKKSAANPNRRGPKTKVTS |
Ga0302324_1011813682 | 3300031236 | Palsa | MDNGNMKTDPQETIEGPEAAARFDALVRKVLSVPHAEIMRREEEYKKQSAANPNRRGPKPKVKPST |
Ga0302324_1017019742 | 3300031236 | Palsa | MKERQAEPIEGPEATARFDVLVRKVLSVPHAEIVRREAEYKKQSMANPKRRGPKRNRTV |
Ga0302324_1022004571 | 3300031236 | Palsa | MSGKPVEVEGTEASARFDALVRKVLSVPHEEIMRREAEYKRHSAENPNRRGPKRKVKS |
Ga0302326_100444931 | 3300031525 | Palsa | MKPQPGTIEGPEAAARFDALVRKVLSVPHSEIMRREEEYQRQSLANPKRRGPKRKVLK |
Ga0302326_127947521 | 3300031525 | Palsa | MDNGNMKTDPQETIEGPEAAARFDALVRKVLSVPHAEIMRREEEYKKHSAANPNRRGPKPKVKPST |
Ga0310686_1119266404 | 3300031708 | Soil | MKPQLEPIEGPEATACFDALVRKVLSVPHAEIMRREAEYKKQSLANPNRRGPKPSSKGDS |
Ga0311301_101485293 | 3300032160 | Peatlands Soil | MKPHPEMIEGPEAAARFDALVRKVLSVPHDEIMRREAAYQRQAAKNPNRRGPKRKTRT |
Ga0335069_100610214 | 3300032893 | Soil | MASMKAATEAPGTSQRMDALVRKVMSVPREEIMRREAEYKRQSLANPRRRGPKPKVKQ |
Ga0335074_1000576214 | 3300032895 | Soil | MKSEPGPVEGPEASALFDALVRKVLSVPHAEILRREEEYKKQAAQNPHKRGPKRKRKPTA |
Ga0335074_102568665 | 3300032895 | Soil | MKSNPGPEEGPEVFARFDALVRKVLSVPHDEVLRREAEYQKQAAINPHKRGPKPKKKS |
Ga0335072_104528281 | 3300032898 | Soil | MTHDEHFDGPEARARFDALVRKVLSVPHSEIMRREAAYKKQSMENPNRRGPKRKRSPDQ |
Ga0335077_111754702 | 3300033158 | Soil | HPEPIEGPEASALFDALVRKVLSVPHAEIMRREAEYQKQSLANPNRRGPKRKVKPSRSVS |
Ga0335077_113058902 | 3300033158 | Soil | MCHDEGMKPQPQPLAGKEATAAFDALVRKVLSVPHAEIMRREAEYKRQSLANPNRRGPKRKSAQ |
Ga0326728_100393659 | 3300033402 | Peat Soil | MKAKAEYAEGPEVAAWFDVLVRKVLSVPHDEIVRREAEYKRLSALNPHRRGPKPKFK |
Ga0326728_105210862 | 3300033402 | Peat Soil | MKTHPKPIEGPQVVAQFDALVRKVLSVPHAEIVRREAEYKLQSLANPNRRGPKPKLKPASVPPTA |
Ga0326728_105861613 | 3300033402 | Peat Soil | MKPIEGPEAARRFDALVRRVISVPHEEIMRREAEYKRRSKLNPHRRGPKPKTKP |
Ga0326727_101775282 | 3300033405 | Peat Soil | MGPTMKAKAEYAEGPEVAAWFDVLVRKVLSVPHDEIVRREAEYKRLSALNPHRRGPKPKF |
Ga0326727_109517811 | 3300033405 | Peat Soil | MKPIEGPEAARRFDALVRRVISVPHEEIMRREAEYKRRSKLNPHRRGPKP |
Ga0371488_0232179_421_597 | 3300033983 | Peat Soil | MNPKPEYVEGPEAALRFDSLVRRVLAVPHAEIMRREAEYKRQSAMNPHRRGPKPKGKP |
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