NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091980

Metagenome / Metatranscriptome Family F091980

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091980
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 37 residues
Representative Sequence MRTYERPTLTPAGSFKKMTGIGGTGPKDALTKKQSL
Number of Associated Samples 62
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 79.44 %
% of genes near scaffold ends (potentially truncated) 22.43 %
% of genes from short scaffolds (< 2000 bps) 85.98 %
Associated GOLD sequencing projects 60
AlphaFold2 3D model prediction Yes
3D model pTM-score0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (69.159 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(27.103 % of family members)
Environment Ontology (ENVO) Unclassified
(34.579 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(28.037 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 23.44%    β-sheet: 0.00%    Coil/Unstructured: 76.56%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.22
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF00733Asn_synthase 13.21
PF12728HTH_17 6.60
PF13471Transglut_core3 0.94
PF16499Melibiase_2 0.94
PF05402PqqD 0.94
PF13546DDE_5 0.94
PF00701DHDPS 0.94
PF01569PAP2 0.94
PF07336ABATE 0.94
PF12838Fer4_7 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG03294-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyaseCell wall/membrane/envelope biogenesis [M] 1.89
COG5516Uncharacterized conserved protein containing a Zn-ribbon-like motif, possibly RNA-bindingGeneral function prediction only [R] 0.94

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms70.09 %
UnclassifiedrootN/A29.91 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000033|ICChiseqgaiiDRAFT_c2106778Not Available565Open in IMG/M
3300000956|JGI10216J12902_123594856Not Available586Open in IMG/M
3300005562|Ga0058697_10023333All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2187Open in IMG/M
3300005562|Ga0058697_10023352All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus2186Open in IMG/M
3300005562|Ga0058697_10034786All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1857Open in IMG/M
3300005562|Ga0058697_10052174All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1571Open in IMG/M
3300005562|Ga0058697_10101560Not Available1194Open in IMG/M
3300005562|Ga0058697_10118119All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1122Open in IMG/M
3300005562|Ga0058697_10464854All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus639Open in IMG/M
3300005562|Ga0058697_10531640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis605Open in IMG/M
3300005562|Ga0058697_10682379Not Available545Open in IMG/M
3300005562|Ga0058697_10725857Not Available531Open in IMG/M
3300005562|Ga0058697_10729075All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces530Open in IMG/M
3300005562|Ga0058697_10746363All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis525Open in IMG/M
3300005981|Ga0081538_10001411All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia24703Open in IMG/M
3300005981|Ga0081538_10002448All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia18155Open in IMG/M
3300005981|Ga0081538_10003483All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia14855Open in IMG/M
3300005985|Ga0081539_10003001All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae22027Open in IMG/M
3300005985|Ga0081539_10061371All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis2060Open in IMG/M
3300006624|Ga0101567_10805405Not Available571Open in IMG/M
3300009162|Ga0075423_10671455All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1093Open in IMG/M
3300009789|Ga0126307_10008610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces7335Open in IMG/M
3300009789|Ga0126307_10012305All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6273Open in IMG/M
3300009789|Ga0126307_10455457All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus1032Open in IMG/M
3300009789|Ga0126307_10969771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia687Open in IMG/M
3300009840|Ga0126313_10816872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus759Open in IMG/M
3300010038|Ga0126315_10071375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1935Open in IMG/M
3300010038|Ga0126315_10093904All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis1711Open in IMG/M
3300010038|Ga0126315_10750045All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis640Open in IMG/M
3300010040|Ga0126308_10142127All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1509Open in IMG/M
3300010041|Ga0126312_10035560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia3326Open in IMG/M
3300010041|Ga0126312_10340747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1061Open in IMG/M
3300010041|Ga0126312_10394474Not Available984Open in IMG/M
3300010042|Ga0126314_10470746All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300010045|Ga0126311_10070758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2312Open in IMG/M
3300010045|Ga0126311_10980125Not Available690Open in IMG/M
3300010145|Ga0126321_1137409All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus502Open in IMG/M
3300012354|Ga0137366_10151501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1745Open in IMG/M
3300012360|Ga0137375_10856741All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia725Open in IMG/M
3300012937|Ga0162653_100051349All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis639Open in IMG/M
3300012938|Ga0162651_100055059Not Available633Open in IMG/M
3300014487|Ga0182000_10022626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1678Open in IMG/M
3300014487|Ga0182000_10022626All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1678Open in IMG/M
3300017997|Ga0184610_1108180Not Available887Open in IMG/M
3300018027|Ga0184605_10240304Not Available823Open in IMG/M
3300018028|Ga0184608_10154646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia990Open in IMG/M
3300018031|Ga0184634_10301842Not Available735Open in IMG/M
3300018051|Ga0184620_10054680All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1133Open in IMG/M
3300018061|Ga0184619_10103484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1280Open in IMG/M
3300018076|Ga0184609_10018872All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2704Open in IMG/M
3300018081|Ga0184625_10488822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis624Open in IMG/M
3300018081|Ga0184625_10595141All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis543Open in IMG/M
3300018465|Ga0190269_10592315Not Available747Open in IMG/M
3300018465|Ga0190269_12053539Not Available500Open in IMG/M
3300018466|Ga0190268_10126978All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis1250Open in IMG/M
3300019279|Ga0184642_1618945Not Available584Open in IMG/M
3300019377|Ga0190264_10070467All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1509Open in IMG/M
3300019767|Ga0190267_11582627All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces chartreusis511Open in IMG/M
3300021078|Ga0210381_10222189All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria664Open in IMG/M
3300027577|Ga0209874_1024185All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1700Open in IMG/M
3300028716|Ga0307311_10099423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia812Open in IMG/M
3300028718|Ga0307307_10182586Not Available661Open in IMG/M
3300028744|Ga0307318_10052177All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1355Open in IMG/M
3300028744|Ga0307318_10128746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria864Open in IMG/M
3300028771|Ga0307320_10376984Not Available568Open in IMG/M
3300028791|Ga0307290_10061264All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1362Open in IMG/M
3300028791|Ga0307290_10278200All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia613Open in IMG/M
3300028796|Ga0307287_10149363All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria888Open in IMG/M
3300028872|Ga0307314_10082439Not Available855Open in IMG/M
3300028880|Ga0307300_10042297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1272Open in IMG/M
3300030510|Ga0268243_1094150All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus690Open in IMG/M
3300030510|Ga0268243_1113130Not Available638Open in IMG/M
3300030510|Ga0268243_1122235Not Available617Open in IMG/M
3300030511|Ga0268241_10000491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6499Open in IMG/M
3300030511|Ga0268241_10201149Not Available506Open in IMG/M
3300030513|Ga0268242_1106380All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia587Open in IMG/M
3300030783|Ga0102752_1569067Not Available623Open in IMG/M
3300030830|Ga0308205_1001454All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1730Open in IMG/M
3300030830|Ga0308205_1004925All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces1198Open in IMG/M
3300030830|Ga0308205_1014832Not Available840Open in IMG/M
3300030903|Ga0308206_1020788All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1107Open in IMG/M
3300030903|Ga0308206_1030087All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis981Open in IMG/M
3300030903|Ga0308206_1155710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus553Open in IMG/M
3300030905|Ga0308200_1158461Not Available528Open in IMG/M
3300030960|Ga0102745_1776172Not Available645Open in IMG/M
3300031039|Ga0102760_10941797Not Available546Open in IMG/M
3300031091|Ga0308201_10236710All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces622Open in IMG/M
3300031092|Ga0308204_10008350All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1790Open in IMG/M
3300031092|Ga0308204_10042767All Organisms → Viruses → Predicted Viral1066Open in IMG/M
3300031092|Ga0308204_10089507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia829Open in IMG/M
3300031092|Ga0308204_10168331All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces663Open in IMG/M
3300031092|Ga0308204_10211690All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces610Open in IMG/M
3300031548|Ga0307408_100078319All Organisms → cellular organisms → Bacteria → Terrabacteria group2463Open in IMG/M
3300031548|Ga0307408_100906319All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria807Open in IMG/M
3300031548|Ga0307408_101488132Not Available640Open in IMG/M
3300031548|Ga0307408_102499645All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces davaonensis502Open in IMG/M
3300031824|Ga0307413_10334472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1162Open in IMG/M
3300031901|Ga0307406_10634993Not Available885Open in IMG/M
3300031903|Ga0307407_11652270All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus509Open in IMG/M
3300031911|Ga0307412_10656798Not Available895Open in IMG/M
3300031911|Ga0307412_11417906All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus629Open in IMG/M
3300031995|Ga0307409_100405875All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1303Open in IMG/M
3300031995|Ga0307409_101720032Not Available656Open in IMG/M
3300032002|Ga0307416_100073970All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus2844Open in IMG/M
3300032159|Ga0268251_10041209Not Available1478Open in IMG/M
3300032159|Ga0268251_10172640All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces cupreus830Open in IMG/M
3300032159|Ga0268251_10202629Not Available779Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil27.10%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil14.02%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave14.02%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere11.21%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment8.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.80%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere2.80%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.87%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.87%
SoilEnvironmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil1.87%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.87%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.93%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand0.93%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000033Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005981Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006624Soil microbial communities from the Leymus chinensis steppe, China - after adding 1.75 g N m- 2, yr-1EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009789Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010040Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010045Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61EnvironmentalOpen in IMG/M
3300010145Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012937Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015EnvironmentalOpen in IMG/M
3300012938Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015EnvironmentalOpen in IMG/M
3300014487Bulk soil microbial communities from Mexico - Magueyal (Ma) metaGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1EnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019377Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 TEnvironmentalOpen in IMG/M
3300019767Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 TEnvironmentalOpen in IMG/M
3300021078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redoEnvironmentalOpen in IMG/M
3300027577Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028791Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028872Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300030510Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)EnvironmentalOpen in IMG/M
3300030511Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)EnvironmentalOpen in IMG/M
3300030513Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)EnvironmentalOpen in IMG/M
3300030783Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 3C (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030830Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030903Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030905Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030960Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 1B (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031039Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031091Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031092Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031824Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2Host-AssociatedOpen in IMG/M
3300031901Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2Host-AssociatedOpen in IMG/M
3300031903Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1Host-AssociatedOpen in IMG/M
3300031911Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1Host-AssociatedOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032159Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiDRAFT_210677813300000033SoilMRTYERPTLMLAGSFKKLTGIGGTGPKDALTKKQSL*
JGI10216J12902_12359485623300000956SoilMHTYERPTLTLAGSFRKMTGVGGFGPRDFLVKRQLS*
Ga0058697_1002333343300005562AgaveMRIYERPTLTLAGSFKKVTGIGGFGPRDALIKRQLS*
Ga0058697_1002335243300005562AgaveMRPYERPALTAAGSFKKVTGLGGWGPRDVLIKKQSF*
Ga0058697_1003478633300005562AgaveMGIYERPTLTLAGSFKKMTGIGGFGPRDFLMKRQLQ*
Ga0058697_1005217443300005562AgaveMRTYERPTLTLAGSFKKLTGIGGFGPRDFLVKRQLS*
Ga0058697_1010156023300005562AgaveMRSYERPTLTPAGSFRKMTGIGGFGPRDALVKQQLS*
Ga0058697_1011811943300005562AgaveMRTYERPTLTKAGSFKRITGIGGFGPRDALQKQQLV*
Ga0058697_1046485423300005562AgaveMRPYERPALTAAGSFKKVTGLGGWGPRDVLIKKQTF*
Ga0058697_1053164033300005562AgaveGGVAMRTYERPTLTLAGSFKKVTGIGGFGPRDAVIKRQLS*
Ga0058697_1068237913300005562AgaveVVLEGGRAMRTYERPTLMLAGSFKKLTGIGGTGPKDALTKKQSL*
Ga0058697_1072585713300005562AgaveMRTYERPTLTPAGSFKKLTGESGWGPRDVLTKHQRL*
Ga0058697_1072907523300005562AgaveTYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0058697_1074636313300005562AgaveMATYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0081538_1000141183300005981Tabebuia Heterophylla RhizosphereMRPYERPTLTAAGSFKKITGLGGWGPRDVITKRQTF*
Ga0081538_10002448123300005981Tabebuia Heterophylla RhizosphereMRAYERPTLTKAGSFKKVTGIGGFGPRDALTKYQSV*
Ga0081538_1000348383300005981Tabebuia Heterophylla RhizosphereMRTYERPTLMPAGSFKKMTGIGGTGPKDALTKKQSL*
Ga0081539_1000300153300005985Tabebuia Heterophylla RhizosphereMRTYERPTLTKLGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0081539_1006137123300005985Tabebuia Heterophylla RhizosphereMRPYERPTLTSAGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0101567_1080540523300006624SoilMRPYERPTLTLAGSFKKLTGLGGTGPKDAVTKKQSM*
Ga0075423_1067145513300009162Populus RhizosphereGYERPTLTPAGSFTSMTGLGGHGPKDTLVKHQLL*
Ga0126307_1000861063300009789Serpentine SoilMRTYERPTLTPAGTFNKITGIGGTGPKDAVTKKQSL*
Ga0126307_1001230533300009789Serpentine SoilMRTYERPTLTPAGSFKMLTGIGGTGPKDAVTKKQSL*
Ga0126307_1045545723300009789Serpentine SoilMRTYERPTLTVAGSFKKMTGIGGFGPRDFLIKRQAS*
Ga0126307_1096977113300009789Serpentine SoilMRTYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0126313_1081687223300009840Serpentine SoilMRTYERPTLTLAGSFKKLTGLGGFGPRDFLVKRQSM*
Ga0126315_1007137523300010038Serpentine SoilMRTYERPTLTLAGSFKRMTGVGGFGPRDALQKQQLL*
Ga0126315_1009390413300010038Serpentine SoilMSTYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0126315_1075004513300010038Serpentine SoilMRTYERPTLMLAGSFKKMTGIGGTGPKDALTKKQSL*
Ga0126308_1014212723300010040Serpentine SoilMRTYERPTLTLAGSFKRITGIGGFGPRDALQKQQLV*
Ga0126312_1003556023300010041Serpentine SoilMRTYERPTLTVAGSFKKMTGIGGFGPRDFLVRRQAV*
Ga0126312_1034074743300010041Serpentine SoilRTYERPTLTKAGSFKKVTGIGGFGPRDALTKYQSL*
Ga0126312_1039447443300010041Serpentine SoilMPRGGVSMRTYERPTLTVAGSFKKMTGLGGFGPRDLLVKRQAQ*
Ga0126314_1047074623300010042Serpentine SoilMHTYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL*
Ga0126311_1007075843300010045Serpentine SoilMRTYERPTLTKAGSFKKVTGIGGFGPRDALTKYQSL*
Ga0126311_1098012513300010045Serpentine SoilMRPYERPTLMAAGSFKKVTGATGTGPRDTLNNKQLL*
Ga0126321_113740913300010145SoilKEVHQVRPYERPTLTVAGSFKKMTGIGGFGPRDALVKRQLS*
Ga0137366_1015150133300012354Vadose Zone SoilMRVYERPTLTLAGLFKKVTGVGGSGPRDMLTRHQLL*
Ga0137375_1085674113300012360Vadose Zone SoilMRTYERPTLKAIGTFASLTGLGGHGPRDLLVKHQFI*
Ga0162653_10005134913300012937SoilMRTYERPTLTPAGSFKKMTGIGGTGPKDALTKKQSL*
Ga0162651_10005505913300012938SoilMRTYERPTLMPAGSFKKMTGIGGTGPKDARTKKQSL*
Ga0182000_1002262623300014487SoilMRPYERPTLMLAGSFKRLTGLGGTGPKDVVTKKQSF*
Ga0182000_1002262633300014487SoilMRPYERPTLTLAGSFKKLTGLGGTGPKDAVTKKQML*
Ga0184610_110818023300017997Groundwater SedimentVVLEGGRAMRTYERPTLMPAGSFKKMTGIGGTGPKDALTKKQSL
Ga0184605_1024030413300018027Groundwater SedimentMRTYERPTLMPAGSFKKMTGIGGTGPKDALTKKQSL
Ga0184608_1015464623300018028Groundwater SedimentEGGRAMRTYERPTLMPAGSFKKMTGIGGSGPKDALTKKQSL
Ga0184634_1030184213300018031Groundwater SedimentMRTYERPTLMPAGSFKKMTGIGGTGPKVALTKKQSL
Ga0184620_1005468023300018051Groundwater SedimentMRTYERPTLMPAGSFKKMTGIGGSGPKDALTKKQSL
Ga0184619_1010348423300018061Groundwater SedimentMRTYERPTLMPAGSFKKMTCIGGSGPKDALTKKQSL
Ga0184609_1001887243300018076Groundwater SedimentVRTYERPTLTPAGTFKKVTGIGGTGPKDALTKKQSL
Ga0184625_1048882223300018081Groundwater SedimentMVGGVAGEEVAMRPYERPTLTAAGSFKKLTGIGGTGPKDALTKKQSL
Ga0184625_1059514113300018081Groundwater SedimentMRTYERPTLMLAGSFKKLTGIGGTGPKDALTKKQSL
Ga0190269_1059231513300018465SoilMATYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL
Ga0190269_1205353923300018465SoilMRTYERPTLTPMGSFNKLTGLGGTGPKDAVTKKQSI
Ga0190268_1012697823300018466SoilMRTYERPTLTPAGSFKKLTGIGGTGPKDAVTKKQSL
Ga0184642_161894523300019279Groundwater SedimentVVLEGGRAMRTYERPTLMPAGSFKKMTGIGGSGPKDALTKKQSL
Ga0190264_1007046723300019377SoilMRPYERPTLTAAGSFKKMTGIGGTGPKDAVTKKQSL
Ga0190267_1158262713300019767SoilMRPYERPTLTAAGSFKKLTGIGGTGPKDALTKKQSL
Ga0210381_1022218923300021078Groundwater SedimentMKKSYERPTLTAAGSFKKMTGIGGTGPKDALTKKQSL
Ga0209874_102418523300027577Groundwater SandETMRIYERPTLTAAGSFKKVTGVGGHGPKDFLMKKQSF
Ga0307311_1009942323300028716SoilMRTYERPTLMPAGSFKQMTGIGGTGPKDALTKKQSL
Ga0307307_1018258623300028718SoilRTYERPTLMPAGSFKKMTGIGGSGPKDALTKKQSL
Ga0307318_1005217723300028744SoilMRPYERPTLTAAGSFKKMTGLGGSGPKDTLGKHQSL
Ga0307318_1012874623300028744SoilGGATGEEVAMRPYERPTLTAAGSFKKLTGLGGSGPKDTLGKHQSL
Ga0307320_1037698413300028771SoilMRTYERPTLTPVGSFKKLTGIGGTGPKDAVTKKQSL
Ga0307290_1006126423300028791SoilMRPYERPTLTAAGSFKKMTGIGGTGPKDALTKKQSL
Ga0307290_1027820023300028791SoilGGRAMRTYERPTLMPAGSFKKMTGIGGTGPKDALTKKQSL
Ga0307287_1014936313300028796SoilWEGGGAMRPYERPTLTAAGSFKKMTGIGGTGPKDALTKKQSL
Ga0307314_1008243913300028872SoilVVLEGGRAMRTYERPTLMPAGSFKKMTGLGGTGPKDALTKKQSL
Ga0307300_1004229713300028880SoilPAMVGGVAGEEVAMRPYERPTLTAAGSFKKLTGIGGTGPKDALTKKQSL
Ga0268243_109415023300030510SoilMRPYERPALTAAGSFKKVTGLGGWGPRDVLIKKQTF
Ga0268243_111313023300030510SoilMRPYERPTLMLAGSFKRLTGLGGTGPKDVVTKKQSF
Ga0268243_112223533300030510SoilMRIYERPTLTLAGSFKKVTGIGGFGPRDALIKRQLS
Ga0268241_1000049163300030511SoilMRPYERPTLTKAGSFKRLTGLGGHGPRDVLVKKQMF
Ga0268241_1020114913300030511SoilWMRTYERPTLTVAGSFKKMTGIGGSGPRDALVKQQFS
Ga0268242_110638023300030513SoilEVHLEDLEGGELMRTYERPTLMAVGSFKATGLSGHGPGDLLLKHQLL
Ga0102752_156906713300030783SoilMRTYERPTLTVAGSFKKTTGLGGFGPRDALIKRQAQ
Ga0308205_100145423300030830SoilVVLEGGRAMRTYERPTLTPAGSFKKMTGIGGSGPKDALTKKQSL
Ga0308205_100492523300030830SoilVVLEGGRAMRTYERPTLMLAGSFKKLTGIGGTGPKDALTKKQSL
Ga0308205_101483223300030830SoilMRTYERPTLTVAGSFKKMTGIGGFGPRDALMKRQAT
Ga0308206_102078813300030903SoilMRTYERPTLTVAGSFKKMTGIGGFGPRDALMKRQAS
Ga0308206_103008723300030903SoilMRPYERPTLTLAGSFKKLTGLGGTGPKDAVTKKQSL
Ga0308206_115571013300030903SoilNWLVLIERDVAMRTYERPTLTLAGSFKKLTGVGGFGPRDFLVKRQST
Ga0308200_115846113300030905SoilMRTPYERPTLIAAGSFAITGLSGRGSPDALLVHNLI
Ga0102745_177617223300030960SoilGRCRMRSYERPTLTPAGSFRKMTGIGGFGPRDALVKQQLS
Ga0102760_1094179723300031039SoilRTYERPTLTRAGSFKKITGLAGSGPRDTLTNKQLL
Ga0308201_1023671013300031091SoilMRTYERPTLIAAGSFKKMTGIGGTGPKDALTKKQSL
Ga0308204_1000835033300031092SoilMRQYERPTLTAAGSFKKVTGIGGWGPRDTISKRQTL
Ga0308204_1004276713300031092SoilMMLTYERPTLTAAVSFKKMTGVGGHGPKDFLVKKQSF
Ga0308204_1008950723300031092SoilVEMRPYERPTLTAVGSFKKMTGLGGTGPKDALTKKQSM
Ga0308204_1016833123300031092SoilVHTYERPTLTLAGSFKKMTGMGGSGPKDFLVKKQML
Ga0308204_1021169013300031092SoilMHTYERPTLTLAGSFKKMTGTGGTGPKDFLVKKQML
Ga0307408_10007831923300031548RhizosphereMRSYERPTLTLAGSFKKLTGLGGFGPRDVLVKRQLS
Ga0307408_10090631923300031548RhizosphereMEVMEGGVAMRTYERPTLTLAGSFKKLTGIGGFGPRDALQKQQLL
Ga0307408_10148813213300031548RhizosphereMTKGGVPMNAYERPTLTKLGSFKKLTGIGGTGPKDA
Ga0307408_10249964513300031548RhizosphereMRSYERPTLTQAGSFRKMTGLGGFGPRDLLVKRQL
Ga0307413_1033447233300031824RhizosphereMTKGGVPMNAYERPTLTKLGSFKKLTGIGGTGPKDALTKKQSL
Ga0307406_1063499323300031901RhizosphereMTKGGVPMNAYERPTLTKLGSFKKLTGIGGTGPKDAITKKQSL
Ga0307407_1165227023300031903RhizosphereMRTYERPTLTAAGSFKKMTGIGGFGPRDFLVRRQAV
Ga0307412_1065679823300031911RhizosphereMRSYERPTLTLAGCFRKMTGVGGFGPRDVLMKRQL
Ga0307412_1141790623300031911RhizosphereMRTYERPTLTVAGSFKKMTGIGGFGPRDFLIKRQAS
Ga0307409_10040587543300031995RhizosphereVSMRTYERPTLTAAGSFKKMTGIGGFGPRDFLVRRQAV
Ga0307409_10172003223300031995RhizosphereMRTYERPTLTLAGSFKRITGIGGFGPRDALQKQQLV
Ga0307416_10007397013300032002RhizosphereMRSYERPTLTQAGSFRKMTGLGGFGPRDLLVKRQLS
Ga0268251_1004120933300032159AgaveMGIYERPTLTLAGSFKKMTGIGGFGPRDFLMKRQLQ
Ga0268251_1017264013300032159AgaveMRPYERPALTAAGSFKKVTGLGGWGPRDVLIKKQSF
Ga0268251_1020262933300032159AgaveMRTYERPTLTLAGSFKKVTGIGGFGPRDAVIKRQLS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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