Metagenome / Metatranscriptome Family F091991

Basic Information
Family ID	F091991
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFERL
Number of Associated Samples	105
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.28 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	96.26 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Most Common Taxonomy
Group	Bacteria (99.065 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (23.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.467 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF09055	Sod_Ni	12.15
PF13581	HATPase_c_2	6.54
PF00717	Peptidase_S24	2.80
PF10009	DUF2252	0.93
PF12323	HTH_OrfB_IS605	0.93
PF13520	AA_permease_2	0.93
PF04542	Sigma70_r2	0.93
PF07336	ABATE	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.93
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.93
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.93
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93
COG5516	Uncharacterized conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	99.07 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.56 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	13.08 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	2.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	3.74 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples	2.80 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1.87 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	2.80 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	2.80 %
Thermomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Unclassified	root	N/A	0.93 %

Name	Rank	Taxonomy	Distribution
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	2.80 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	2.80 %
Thermomonospora curvata	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Unclassified	root	N/A	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001084\|JGI12648J13191_1026921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300001356\|JGI12269J14319_10038117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Thermomonospora → Thermomonospora curvata	3059	Open in IMG/M
3300001593\|JGI12635J15846_10579583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300001593\|JGI12635J15846_10755736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300003219\|JGI26341J46601_10069186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	1070	Open in IMG/M
3300003505\|JGIcombinedJ51221_10107405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1113	Open in IMG/M
3300004156\|Ga0062589_102770845	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	511	Open in IMG/M
3300004477\|Ga0068971_1566625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	934	Open in IMG/M
3300004605\|Ga0068952_1290161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	629	Open in IMG/M
3300005164\|Ga0066815_10042869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	723	Open in IMG/M
3300005178\|Ga0066688_10859241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	563	Open in IMG/M
3300005180\|Ga0066685_10847682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	615	Open in IMG/M
3300005363\|Ga0008090_15598745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300005458\|Ga0070681_11378291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300005602\|Ga0070762_10102591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1658	Open in IMG/M
3300005764\|Ga0066903_104510332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	743	Open in IMG/M
3300006028\|Ga0070717_11117970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	717	Open in IMG/M
3300006580\|Ga0074049_13147073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	728	Open in IMG/M
3300006804\|Ga0079221_10104373	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1400	Open in IMG/M
3300006954\|Ga0079219_10550846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	826	Open in IMG/M
3300009098\|Ga0105245_13031228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M
3300009700\|Ga0116217_10523000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300010339\|Ga0074046_10253231	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1092	Open in IMG/M
3300010359\|Ga0126376_10591400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1048	Open in IMG/M
3300010866\|Ga0126344_1259707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	637	Open in IMG/M
3300011069\|Ga0138592_1130596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	724	Open in IMG/M
3300011072\|Ga0138563_1106975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	530	Open in IMG/M
3300012209\|Ga0137379_10687357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	929	Open in IMG/M
3300012357\|Ga0137384_11476774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300012505\|Ga0157339_1002395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1262	Open in IMG/M
3300012683\|Ga0137398_10864262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	631	Open in IMG/M
3300012984\|Ga0164309_11127056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300016387\|Ga0182040_11672470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300017822\|Ga0187802_10467446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300017955\|Ga0187817_10358227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	931	Open in IMG/M
3300017970\|Ga0187783_10362260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1055	Open in IMG/M
3300017973\|Ga0187780_10662159	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300018006\|Ga0187804_10285479	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	717	Open in IMG/M
3300018062\|Ga0187784_10595924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	888	Open in IMG/M
3300018431\|Ga0066655_11166690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300018468\|Ga0066662_10335750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1291	Open in IMG/M
3300019181\|Ga0184594_103153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300021388\|Ga0213875_10239284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	855	Open in IMG/M
3300022709\|Ga0222756_1055517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	602	Open in IMG/M
3300022722\|Ga0242657_1141107	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	628	Open in IMG/M
3300022724\|Ga0242665_10202371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	655	Open in IMG/M
3300025320\|Ga0209171_10547384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	566	Open in IMG/M
3300025922\|Ga0207646_11027075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300025928\|Ga0207700_11560727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	585	Open in IMG/M
3300026295\|Ga0209234_1176002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300026551\|Ga0209648_10742169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300027031\|Ga0208986_1011217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	870	Open in IMG/M
3300027096\|Ga0208099_1058622	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	546	Open in IMG/M
3300027110\|Ga0208488_1033094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	946	Open in IMG/M
3300027165\|Ga0208608_110192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	615	Open in IMG/M
3300027504\|Ga0209114_1029983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	913	Open in IMG/M
3300027651\|Ga0209217_1172517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300027652\|Ga0209007_1166448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	545	Open in IMG/M
3300027676\|Ga0209333_1047569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1186	Open in IMG/M
3300027680\|Ga0207826_1105691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300027692\|Ga0209530_1122992	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	733	Open in IMG/M
3300027908\|Ga0209006_10293098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1390	Open in IMG/M
3300028708\|Ga0307295_10231522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	529	Open in IMG/M
3300029944\|Ga0311352_10476910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1012	Open in IMG/M
3300029951\|Ga0311371_12618099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300030520\|Ga0311372_10988217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1113	Open in IMG/M
3300030545\|Ga0210271_10036888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300030588\|Ga0210283_1409415	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300030597\|Ga0210286_1145058	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	674	Open in IMG/M
3300030629\|Ga0210268_1206876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	630	Open in IMG/M
3300030629\|Ga0210268_1334604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300030730\|Ga0307482_1094028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	810	Open in IMG/M
3300030836\|Ga0265767_110609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300030969\|Ga0075394_12097742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300031027\|Ga0302308_10029073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4148	Open in IMG/M
3300031128\|Ga0170823_10500327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300031233\|Ga0302307_10333929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300031543\|Ga0318516_10887243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	502	Open in IMG/M
3300031546\|Ga0318538_10408579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	735	Open in IMG/M
3300031561\|Ga0318528_10769570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	515	Open in IMG/M
3300031564\|Ga0318573_10282933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	887	Open in IMG/M
3300031668\|Ga0318542_10245554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	910	Open in IMG/M
3300031681\|Ga0318572_10681965	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300031719\|Ga0306917_11001618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300031736\|Ga0318501_10457177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300031781\|Ga0318547_10663923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300031799\|Ga0318565_10340484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	728	Open in IMG/M
3300031805\|Ga0318497_10690133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300031831\|Ga0318564_10410260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300031846\|Ga0318512_10689603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300031910\|Ga0306923_10676323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1151	Open in IMG/M
3300031912\|Ga0306921_11869323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300031941\|Ga0310912_10260723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1336	Open in IMG/M
3300031954\|Ga0306926_11229269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	878	Open in IMG/M
3300031959\|Ga0318530_10135987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300032035\|Ga0310911_10522754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	688	Open in IMG/M
3300032055\|Ga0318575_10458732	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300032059\|Ga0318533_10742908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	720	Open in IMG/M
3300032065\|Ga0318513_10272502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	821	Open in IMG/M
3300032067\|Ga0318524_10427879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300032174\|Ga0307470_11189500	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	618	Open in IMG/M
3300032770\|Ga0335085_10559994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1293	Open in IMG/M
3300032783\|Ga0335079_10304440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1738	Open in IMG/M
3300033158\|Ga0335077_11277143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300034124\|Ga0370483_0018830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2022	Open in IMG/M
3300034818\|Ga0373950_0049381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	823	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.59%
Aquatic	Environmental → Aquatic	4.67%
Plants	Host-Associated → Plants	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.92%
Peat	Environmental → Terrestrial → Peat	4.67%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.88%
Loam	Environmental → Terrestrial → Soil → Loam	19.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.08%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001084	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004605	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 40 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010866	Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011069	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 19 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011072	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 48 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019181	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZI3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027031	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027165	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF035 (SPAdes)	Environmental	Open in IMG/M
3300027504	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030545	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO142-VCO033SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030588	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO740-VDE011SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030597	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO747-VDE046SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030629	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030836	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031027	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091991

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12648J13191_10269211	3300001084	Forest Soil	VSSEFEVQVTEEFEVVRPPEPVLRVDTGSPDRARARELFERL
JGI12269J14319_100381171	3300001356	Peatlands Soil	VSSEFEVQVTEEFEVAQATEELEVAQATTETVRIEHGSPDRARAR
JGI12635J15846_105795831	3300001593	Forest Soil	VSSEFEVQVTEEFEIAEATEPSVRTERGSPDRARARELFE
JGI12635J15846_107557361	3300001593	Forest Soil	VSSEFEVQVTEEFEVVRPPEPVLRVDTGSPDRARARELFERLS
JGI26341J46601_100691861	3300003219	Bog Forest Soil	VSSEFEVQVTEDFEVAQATEDLEVAQATAETVRIEHGSPDR
JGIcombinedJ51221_101074051	3300003505	Forest Soil	VSSEFEVQVTEELEVAQATAETVRIEHGSPDRARARELFERLA
Ga0062589_1027708451	3300004156	Soil	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELFERLAVLAPEDP
Ga0068971_15666252	3300004477	Peatlands Soil	VSSEFEVQVTEDFEVAQATAETVRVEHGSPDRARARELFERLA*
Ga0068952_12901612	3300004605	Peatlands Soil	VSSEFEVQVTEDFEVAQATAETVRIEHGSPDRARARELFERLAELP
Ga0066815_100428691	3300005164	Soil	VSSEFEVQVTEDYEVAQATAETVRIEHGSPDRARARELFERLAGLP
Ga0066688_108592412	3300005178	Soil	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELFE
Ga0066685_108476821	3300005180	Soil	VSSEFEVQVTEDVQVTEDYEVAQATAETVRIEHSSPDRARARELFERLAQ
Ga0008090_155987452	3300005363	Tropical Rainforest Soil	VSSEFEVQVTEEFDVVQADAAMRVEPGSPDRGRARELFERLSEL
Ga0070681_113782911	3300005458	Corn Rhizosphere	VSSEFEVQVTEDVQVTEDYEVAQATAETVRIEHSSPDRARAR
Ga0070762_101025911	3300005602	Soil	VSGEFEVQVTEELEVVQAASETVRVEHGSPDRARAREMF
Ga0066903_1045103322	3300005764	Tropical Forest Soil	VSSEFEVQVTEDFEVVQATAETMRIEHGSPDRARARELFERLAEL
Ga0070717_111179702	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VSGEFEVAQVADEFEVAQATAETVRIEHGSPDRARARELFERLAQLPPDDPE
Ga0074049_131470731	3300006580	Soil	VSSEFEVQVTEELEVTQATAETVRIDHGSPDRARARELFERL
Ga0079221_101043733	3300006804	Agricultural Soil	VSSEFEVQVTEDFEVAQATTETVRIEHSSPDRARARELFERLAVLA
Ga0079219_105508462	3300006954	Agricultural Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELF
Ga0105245_130312282	3300009098	Miscanthus Rhizosphere	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELFERLAV
Ga0116217_105230001	3300009700	Peatlands Soil	VSSEYELQVTDEFDVIQATEPPVRVEHGSPDRARAREMFERLAVHPAGDPERA
Ga0074046_102532311	3300010339	Bog Forest Soil	VSSEFEVQVTEELEVIQATEELEVAQATAETVRIEHGSP
Ga0126376_105914001	3300010359	Tropical Forest Soil	VSGEFEVAQVADEFEVAQATAETVRIEHGSPDRARARELFERLAQLPPEDP
Ga0126344_12597071	3300010866	Boreal Forest Soil	VSSEFEVQVTEDFEVAQATAETVRIEHGSPDRARARELFERLTALPADE
Ga0138592_11305961	3300011069	Peatlands Soil	VSSEFEVQVTEHFEVAQATAETVRIEHGSPDRARARELFER
Ga0138563_11069751	3300011072	Peatlands Soil	VSSEFEVQVTEDFEVAQATAETVRVEHGSPDRARARELFERLA
Ga0137379_106873571	3300012209	Vadose Zone Soil	VSSEFEVQVTEDFEVAQATTETVRIEHSSPDRARARE
Ga0137384_114767742	3300012357	Vadose Zone Soil	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELF
Ga0157339_10023953	3300012505	Arabidopsis Rhizosphere	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARE
Ga0137398_108642621	3300012683	Vadose Zone Soil	VSSEFEIQVTEEFEVAQVTAEAVRVEHGSPDRARARELFERLAQL
Ga0164309_111270561	3300012984	Soil	VSGEFEVAQVADEFEVAQATAETVRIEHGSPDRARARELFERLAQLPPD
Ga0182040_116724702	3300016387	Soil	VSSEFEVQVTEEFEVAQATAETVRIETGSPDRARARELFERL
Ga0187802_104674462	3300017822	Freshwater Sediment	VSSEFEVQVTEEFEVVQAEAAQAETAQAEVVLRIEHSSPDRARARELFERLAELP
Ga0187817_103582273	3300017955	Freshwater Sediment	VSSEFEVQVTEDLEVAQATAETVRIEHGSPDRARARELFERLAELPADDP
Ga0187783_103622603	3300017970	Tropical Peatland	VSSEFEVQVTEEFEVVQAETVIRIEHESPPDRARARELFERLPELPADDPGRARIRGY
Ga0187780_106621591	3300017973	Tropical Peatland	VSSEFEVRVSSEFEVQVTEEFEVVQAAAEMRIEHGSPDRARARELFERL
Ga0187804_102854792	3300018006	Freshwater Sediment	VSSEFEVQVTEEFEVQVTEELEVAQATAETVRIEHGSPDRARARELFER
Ga0187784_105959241	3300018062	Tropical Peatland	VSSEFEVQVTEEFEVVQAEAVRAEAALRIEHSSPDRARAR
Ga0066655_111666902	3300018431	Grasslands Soil	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARA
Ga0066662_103357501	3300018468	Grasslands Soil	VSSEFEAQVTEDVDVTEDYEVAQATPEAGRIEDCSHAAGPASDVFERLAQVPA
Ga0184594_1031532	3300019181	Soil	VSSEFEVQVTEDFEVAQTTAETVRIEHGSPDRARAR
Ga0213875_102392841	3300021388	Plant Roots	VSGEFEVAQVAEELELAHDPEVAQATAETARIERGSPDRARARELFERLT
Ga0222756_10555171	3300022709	Soil	VSSEFEVQVTEEFEVTLPPVRAESGSPDRARAREMFERLATLPKEDPERA
Ga0242657_11411071	3300022722	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHGSPDRARA
Ga0242665_102023711	3300022724	Soil	VSSEFEVQVTEELEVAQATAEAVRIEHGSPDRARARELFER
Ga0209171_105473842	3300025320	Iron-Sulfur Acid Spring	VSSEFEVQVTEEFEVARAAEPVLRIEGGSPDRARAR
Ga0207646_110270752	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VSSEFEVQVTEDVQVTEDYEVAQATAETVRIEHSSPDRARA
Ga0207700_115607271	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFER
Ga0209234_11760022	3300026295	Grasslands Soil	VSGEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELFERLAVL
Ga0209648_107421691	3300026551	Grasslands Soil	VSSEFEVQVTEEFEVAQTTAETVRIEHGSPDRARARELFERL
Ga0208986_10112172	3300027031	Forest Soil	VSSEFEVQVTEDYEVARATAETVRIEHSSPDRARARELFERL
Ga0208099_10586222	3300027096	Forest Soil	VSSEFEVQVTEDFEVAQTAAETVRIEHGSPDRARARELFERLAE
Ga0208488_10330942	3300027110	Forest Soil	VSSEFEVQVTEEFEVAQATDHTVRIEHGSPDRARARELFERL
Ga0208608_1101922	3300027165	Forest Soil	VSSEFEVQVTEEFEVAQATDQTVRIEHGSPDRARARE
Ga0209114_10299833	3300027504	Forest Soil	VSSEYEVQVTEDPEVAQATAETARMERSSPDRARAR
Ga0209217_11725172	3300027651	Forest Soil	VSSEFEVQVTEDFEVAQATAETVRIEHGSPDRARARELFERLAE
Ga0209007_11664482	3300027652	Forest Soil	VSSEFEVQVTEEFEVEAPVMRAESSGSPDRARAREMFE
Ga0209333_10475691	3300027676	Forest Soil	VSSEYEAQMTEDPEVIQATAEIRIDHGSPDRARARELFERLAVLPP
Ga0207826_11056911	3300027680	Tropical Forest Soil	VSNEFEVQVTEEFDVVQAEAAMRVEHSPPDRGRARELFERL
Ga0209530_11229921	3300027692	Forest Soil	VSSEFEVQVTEEFEIAEATEPSVRTERGSPDRARARELFERL
Ga0209006_102930981	3300027908	Forest Soil	VSGEFEVQVTEELEVVQAASETVRVEHGSPDRARAREMFERLAVLPA
Ga0307295_102315222	3300028708	Soil	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELFERLAVLPP
Ga0311352_104769103	3300029944	Palsa	VSSEFEVQVTEDPDVAQATAEVVRVERGSPDRARARELFERLAVLPAD
Ga0311371_126180991	3300029951	Palsa	VSSEFEVQVTEDPEVAQATAEVVRVERGSPDRARARELFERLSVLPADDPE
Ga0311372_109882173	3300030520	Palsa	VSGEFEVQVTEEFEVAQATEQTVRIEHSSPDRARAREMFERLAVLPA
Ga0210271_100368883	3300030545	Soil	VSGEFEVQVTEELEVVQAASETVRVEHGSPDRARAREMFERLAVLPAELIKTRFN
Ga0210283_14094152	3300030588	Soil	VSGEFEVQVTEELEVVQAASETVRVEHGSPDRARAREMFERLAVLPADDP
Ga0210286_11450581	3300030597	Soil	VSSEFGVQVTEDFEVAQATAETVRIEHGSPDRARARELFERLTQLPADDPE
Ga0210268_12068761	3300030629	Soil	VSGEFEVQVTEELEVVQAASETVRVEHGSPDRARAREMFERLAVLP
Ga0210268_13346042	3300030629	Soil	MSSEFEVQVTEDFEVAQATTETVRVERGSPDRARARELFQR
Ga0307482_10940281	3300030730	Hardwood Forest Soil	VSSEFEVQVTEELEVAQATAETVRIEHGSPDRARARELFE
Ga0265767_1106091	3300030836	Soil	VSSEFEVQVTEELEVAQATAETVRIEHGSPDRARARE
Ga0075394_120977421	3300030969	Soil	VSSEFEVQVTEEFEVAQATAETVRIEHGSPDRARARELFERLAEL
Ga0302308_100290731	3300031027	Palsa	VSSEFEVQVTEEFEMAQATEQTVRIEHSSPDRARAREMFERLAVLPADDPER
Ga0170823_105003272	3300031128	Forest Soil	VSSEFEVQVTEDFEVAQATADVVRVERGSPDRARARELFERLA
Ga0302307_103339292	3300031233	Palsa	VSSEFEVQVTEELEVVQATSETVRIEHGSPDRARARALF
Ga0318516_108872432	3300031543	Soil	VSSEFEVQVTEEFEVNQATAETVRIEHSSPDRARAREL
Ga0318538_104085791	3300031546	Soil	VSSEFEVQVTEEFEVAQATAETVRIEHSSPDRARARELFERLAQLAPDDP
Ga0318528_107695702	3300031561	Soil	VSSEFEVQVTEELEVVQAGAAHAEAALRIEHSSPDRARARELFERLAGLP
Ga0318573_102829332	3300031564	Soil	VSSEFEVQVTEEFEVVQAEAAQAEAALRIEHSSPDRA
Ga0318542_102455542	3300031668	Soil	VSSEFEVQVTEEFDVVEVDAAMRAEHGSPDRGRARELFERLSE
Ga0318572_106819652	3300031681	Soil	VSSEFEVQVTEELEVVQATAETVRIEHGSPDRARARELFERLAELPAG
Ga0306917_110016182	3300031719	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFERLTEL
Ga0318501_104571771	3300031736	Soil	VSSEFEVQVTEEFEVAQATPETVRIEHSSPDRARARELFERLAQLAPDD
Ga0318547_106639232	3300031781	Soil	VSSEFEVQVTEEFEVAQATPETVRIEHSSPDRARARELFERLAQ
Ga0318565_103404842	3300031799	Soil	VSSEFEVQVTEEFDVVEVDAAMRAEHGSPDRGRARE
Ga0318497_106901331	3300031805	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFERLAGLAPGRARSA
Ga0318564_104102602	3300031831	Soil	VSSEFEVQVTEEFEVAQATAETVRIEHSSPDRARARELFERLAQLAP
Ga0318512_106896031	3300031846	Soil	VSSEFEVQVTEEFEVVQATAETVRLEHGSPDRARAR
Ga0306923_106763233	3300031910	Soil	VSSEFEVQVTEEFEVAQATAETVRIEHSSPDRARARELFERLAQLA
Ga0306921_118693232	3300031912	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARE
Ga0310912_102607233	3300031941	Soil	VSSEFEVQVTEDFEVVQATAETVRLEHGSPDRARARELFERLAELPPDDP
Ga0306926_112292691	3300031954	Soil	VSSEFEVQVTEDFEVVQATAETVRLEHGSPDRARARE
Ga0318530_101359871	3300031959	Soil	VSSEFEVQVTEELEVVQPGAAHAEAALRIEHSSPDRARARELFERLA
Ga0310911_105227542	3300032035	Soil	VSSEFEVQVTEEFEVVQAEAAQAEAALRIEHSSPDRARARELFGRLAELPP
Ga0318575_104587321	3300032055	Soil	VSSEFEVQVTEELEVVQAGAAHAEAALRIEHSSPDRARAR
Ga0318533_107429081	3300032059	Soil	VSSEFEVQVTEEFEVAQATAETVRIEHSSPDRARA
Ga0318513_102725023	3300032065	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFG
Ga0318524_104278792	3300032067	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFERLAVLAPDD
Ga0307470_111895001	3300032174	Hardwood Forest Soil	VSSEFEVQVTEELEVAQATAEAVRIEHGSPDRARARELFERLAELPP
Ga0335085_105599941	3300032770	Soil	VSSEFEVQVTEDFEVAQATAETVRIEHSSPDRARARELFERL
Ga0335079_103044404	3300032783	Soil	VSSEFEVQVTEEFEVAQATAETVRIEHGSPDRARARELFE
Ga0335081_1002503513	3300032892	Soil	VSSEFEVQVTEDVQVTEDVQVTEDFEVAQATAETVRIEHSSPDRARARELFERL
Ga0335077_112771432	3300033158	Soil	VSNEYEVQVTEDLDVVQATAEIRIDQGSPDRARARELFER
Ga0370483_0018830_1889_2020	3300034124	Untreated Peat Soil	VSSEFEVQVTEEFEVAQATSQTVRVENGSPDRARAREMFERLAI
Ga0373950_0049381_698_823	3300034818	Rhizosphere Soil	VSSEFEVQVTEDYEVAQATAETVRIEHSSPDRARARELFERL

Hidden Markov Model


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