NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F091992

Metagenome / Metatranscriptome Family F091992

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F091992
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 61 residues
Representative Sequence MTDVELTRALERGEVPNEGFHHADHLRVAWVYLHESATVDQALARMAATLRRFAASVG
Number of Associated Samples 97
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 16.98 %
% of genes near scaffold ends (potentially truncated) 98.13 %
% of genes from short scaffolds (< 2000 bps) 95.33 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (85.047 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(8.411 % of family members)
Environment Ontology (ENVO) Unclassified
(38.318 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(60.748 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.84%    β-sheet: 0.00%    Coil/Unstructured: 51.16%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.76
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
a.123.1.1: Nuclear receptor ligand-binding domaind3olla_3oll0.66077
a.123.1.1: Nuclear receptor ligand-binding domaind7bjud_7bju0.64707
f.38.1.2: LacY-like proton/sugar symporterd6vbga_6vbg0.62881
a.111.1.1: Type 2 phosphatidic acid phosphatase, PAP2d1d2ta_1d2t0.62518
f.38.1.3: Proton-dependent oligopeptide transporter (POT or PTR2) / nitrate transporter NRT1 familyd4oh3a_4oh30.62363

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF04389Peptidase_M28 32.71
PF03795YCII 18.69
PF00076RRM_1 10.28
PF07833Cu_amine_oxidN1 2.80
PF01047MarR 1.87
PF10035DUF2179 1.87
PF02311AraC_binding 0.93
PF0563523S_rRNA_IVP 0.93
PF04185Phosphoesterase 0.93
PF00378ECH_1 0.93
PF05299Peptidase_M61 0.93
PF069833-dmu-9_3-mt 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 18.69
COG0308Aminopeptidase N, contains DUF3458 domainAmino acid transport and metabolism [E] 0.93
COG2764Zn-dependent glyoxalase, PhnB familyEnergy production and conversion [C] 0.93
COG3511Phospholipase CCell wall/membrane/envelope biogenesis [M] 0.93
COG3865Glyoxalase superfamily enzyme, possible 3-demethylubiquinone-9 3-methyltransferaseGeneral function prediction only [R] 0.93
COG3975Predicted metalloprotease, contains C-terminal PDZ domainGeneral function prediction only [R] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms85.05 %
UnclassifiedrootN/A14.95 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001686|C688J18823_10554966All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300004157|Ga0062590_102989290All Organisms → cellular organisms → Bacteria → Proteobacteria506Open in IMG/M
3300004643|Ga0062591_102608566All Organisms → cellular organisms → Bacteria → Proteobacteria533Open in IMG/M
3300005093|Ga0062594_101021164All Organisms → cellular organisms → Bacteria798Open in IMG/M
3300005093|Ga0062594_101843099All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300005328|Ga0070676_11245101All Organisms → cellular organisms → Bacteria → Proteobacteria567Open in IMG/M
3300005332|Ga0066388_101628962All Organisms → cellular organisms → Bacteria1137Open in IMG/M
3300005332|Ga0066388_103172673All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300005338|Ga0068868_101991570All Organisms → cellular organisms → Bacteria → Proteobacteria551Open in IMG/M
3300005338|Ga0068868_102207098All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300005340|Ga0070689_101382658All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Balneatrichaceae → Balneatrix → Balneatrix alpica635Open in IMG/M
3300005353|Ga0070669_100263617All Organisms → cellular organisms → Bacteria → Proteobacteria1376Open in IMG/M
3300005354|Ga0070675_100857005All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300005365|Ga0070688_100272582All Organisms → cellular organisms → Bacteria1213Open in IMG/M
3300005440|Ga0070705_100499779All Organisms → cellular organisms → Bacteria923Open in IMG/M
3300005445|Ga0070708_100590715All Organisms → cellular organisms → Bacteria1047Open in IMG/M
3300005447|Ga0066689_10709301All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300005447|Ga0066689_11001526All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300005466|Ga0070685_10952533All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300005471|Ga0070698_100188024All Organisms → cellular organisms → Bacteria2003Open in IMG/M
3300005534|Ga0070735_10221403All Organisms → cellular organisms → Bacteria → Acidobacteria1153Open in IMG/M
3300005535|Ga0070684_101805329All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria577Open in IMG/M
3300005536|Ga0070697_101684370Not Available567Open in IMG/M
3300005539|Ga0068853_101389546All Organisms → cellular organisms → Bacteria679Open in IMG/M
3300005614|Ga0068856_102604696All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300005617|Ga0068859_100896594All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300005713|Ga0066905_100136755All Organisms → cellular organisms → Bacteria1740Open in IMG/M
3300005843|Ga0068860_102607855All Organisms → cellular organisms → Bacteria524Open in IMG/M
3300006028|Ga0070717_11567783All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300006028|Ga0070717_11882314All Organisms → cellular organisms → Bacteria → Proteobacteria540Open in IMG/M
3300006046|Ga0066652_102051384All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300006047|Ga0075024_100053818All Organisms → cellular organisms → Bacteria1687Open in IMG/M
3300006580|Ga0074049_13096549All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300006796|Ga0066665_11220979All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium574Open in IMG/M
3300006854|Ga0075425_101734387All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300006871|Ga0075434_100176804All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2154Open in IMG/M
3300006881|Ga0068865_101330275All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300006904|Ga0075424_101554215All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300009011|Ga0105251_10299396Not Available729Open in IMG/M
3300009094|Ga0111539_12536984All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium594Open in IMG/M
3300009137|Ga0066709_102880101All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium635Open in IMG/M
3300009147|Ga0114129_13298039All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300009162|Ga0075423_13007636All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300009176|Ga0105242_10917994All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium877Open in IMG/M
3300010047|Ga0126382_10362667All Organisms → cellular organisms → Bacteria1115Open in IMG/M
3300010159|Ga0099796_10418742Not Available590Open in IMG/M
3300010362|Ga0126377_10481043All Organisms → cellular organisms → Bacteria1270Open in IMG/M
3300010373|Ga0134128_10676581All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1146Open in IMG/M
3300010399|Ga0134127_13173308All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M
3300010401|Ga0134121_12190776All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium589Open in IMG/M
3300010403|Ga0134123_10655294All Organisms → cellular organisms → Bacteria → Acidobacteria1019Open in IMG/M
3300011119|Ga0105246_11430706All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia646Open in IMG/M
3300011271|Ga0137393_11055918All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia691Open in IMG/M
3300012096|Ga0137389_11508182All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia568Open in IMG/M
3300012363|Ga0137390_11387522All Organisms → cellular organisms → Bacteria647Open in IMG/M
3300012961|Ga0164302_10452619Not Available892Open in IMG/M
3300013296|Ga0157374_12326831All Organisms → cellular organisms → Bacteria → Acidobacteria563Open in IMG/M
3300013297|Ga0157378_12344191Not Available585Open in IMG/M
3300013306|Ga0163162_11332085Not Available816Open in IMG/M
3300014968|Ga0157379_11198762Not Available730Open in IMG/M
3300015371|Ga0132258_12386174All Organisms → cellular organisms → Bacteria → Acidobacteria1325Open in IMG/M
3300015372|Ga0132256_103421657All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300015374|Ga0132255_105539527All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
3300015374|Ga0132255_106279470All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium503Open in IMG/M
3300017656|Ga0134112_10502686All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium514Open in IMG/M
3300018071|Ga0184618_10238926Not Available767Open in IMG/M
3300019362|Ga0173479_10519821All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300021432|Ga0210384_11675862All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia541Open in IMG/M
3300022756|Ga0222622_10691849All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium741Open in IMG/M
3300025735|Ga0207713_1202008All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300025899|Ga0207642_10589353Not Available691Open in IMG/M
3300025907|Ga0207645_10560546All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300025922|Ga0207646_10813028All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium832Open in IMG/M
3300025924|Ga0207694_10736263Not Available832Open in IMG/M
3300025930|Ga0207701_10107847All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2493Open in IMG/M
3300025933|Ga0207706_10195146All Organisms → cellular organisms → Bacteria1776Open in IMG/M
3300025937|Ga0207669_11051586All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium686Open in IMG/M
3300025937|Ga0207669_11276059All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia623Open in IMG/M
3300025945|Ga0207679_10766346All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300025960|Ga0207651_11214117All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium677Open in IMG/M
3300025972|Ga0207668_10298268All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1329Open in IMG/M
3300025972|Ga0207668_10933331Not Available773Open in IMG/M
3300025986|Ga0207658_11538305All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium608Open in IMG/M
3300026023|Ga0207677_10427371All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300026023|Ga0207677_11243539All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300026035|Ga0207703_10550945All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1087Open in IMG/M
3300026088|Ga0207641_10899902All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium879Open in IMG/M
3300026142|Ga0207698_11318126Not Available737Open in IMG/M
3300027821|Ga0209811_10129209All Organisms → cellular organisms → Bacteria926Open in IMG/M
3300027862|Ga0209701_10075902All Organisms → cellular organisms → Bacteria2122Open in IMG/M
3300027873|Ga0209814_10163408All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium957Open in IMG/M
3300027903|Ga0209488_10876385All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300027907|Ga0207428_10730999All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300027986|Ga0209168_10155054All Organisms → cellular organisms → Bacteria → Acidobacteria1159Open in IMG/M
3300028819|Ga0307296_10112758All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1460Open in IMG/M
3300031231|Ga0170824_106386149All Organisms → cellular organisms → Bacteria → Acidobacteria739Open in IMG/M
3300031548|Ga0307408_101202302Not Available707Open in IMG/M
3300031724|Ga0318500_10543342Not Available586Open in IMG/M
3300031890|Ga0306925_12005540All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae546Open in IMG/M
3300031910|Ga0306923_11922275All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
3300031943|Ga0310885_10154959All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1099Open in IMG/M
3300031943|Ga0310885_10811719All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia532Open in IMG/M
3300032059|Ga0318533_10356112All Organisms → cellular organisms → Bacteria → Acidobacteria1066Open in IMG/M
3300032074|Ga0308173_11907099Not Available560Open in IMG/M
3300032075|Ga0310890_11405827All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300033551|Ga0247830_11075389All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia642Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.41%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.54%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere5.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere4.67%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.80%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere2.80%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.80%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.87%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.93%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005365Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006580Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025735Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027821Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027907Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032074Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
C688J18823_1055496623300001686SoilVALTRALERCEAPTEGLPHAAHLRVAWVYLVECASLDEATAKMAATLRRFTASVGQAEKY
Ga0062590_10298929023300004157SoilMLNRADVELTRAIERCEPPGSGFPHASHLRVAWVYLHECESIDRAIERMAETLRRFA
Ga0062591_10260856623300004643SoilMLNRHDVELARGLERCGIPSGGFPHASHLRVAWVYLHECQSIDQAIARMAETLRRFAVSVGQAEKY
Ga0062594_10102116413300005093SoilMTAAEDVALARALERCEPPAAGFPHASHLRVAWVYLHESAGVEQALARMAATLKRFAASV
Ga0062594_10184309913300005093SoilMTTAEDVELARALERGELPNDGFHHADHLRVGWCYLEECGGADQALARMAATLRRF
Ga0070676_1124510113300005328Miscanthus RhizosphereMLNRHDVELARGLERCGIPSGGFPHASHLRVAWVYLHECQSIDQAIARMAETLRRFAVSVGQA
Ga0066388_10162896213300005332Tropical Forest SoilMTDVELARALERGEIPNQGFHHVDHLRVALVYLNESPSVDVAVGRMASTLRRFAASVGKAEKYSQTVTEFWMYQMAAAR
Ga0066388_10317267313300005332Tropical Forest SoilMTDVELTRALERAEVPDAGFHHADHLRVAWVYLDEAATVDEAVGRMSDTLR
Ga0068868_10199157013300005338Miscanthus RhizosphereMLNRHDVELARGLERCGIPSGGFPHASHLRVAWVYLHECQSIDQAIARMAETLRRFAVSVGQAEKYSDPTTAFWMLQVA
Ga0068868_10220709813300005338Miscanthus RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGHAEKYSQAVTEFW
Ga0070689_10138265813300005340Switchgrass RhizosphereMLNRDDVELARGLERLEVPGGAFPHASHLRVAWVYLHECQSIDQAIDRMAGTLRRFAASVGQ
Ga0070669_10026361713300005353Switchgrass RhizosphereMIAADDVELTRALERCEPPSAGFPHASHLRVAWVYLNESASVAEALARMGDTLRLFAA
Ga0070675_10085700523300005354Miscanthus RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKR
Ga0070688_10027258233300005365Switchgrass RhizosphereMLSRDDVELARGLERCEVPSAGFPHASHLRVAWVYLHECRSIDQAIARMAATLRRFAASAGQAEKYSDPTT
Ga0070705_10049977913300005440Corn, Switchgrass And Miscanthus RhizosphereMVAAPDVELTRALERCEVPNAGFPHASHLRVAWVYLSESPTVDQALARMAATLRRFAASV
Ga0070708_10059071513300005445Corn, Switchgrass And Miscanthus RhizosphereMTDVELTRALERGEVPNEGFHHADHLRVAWVYLHESATVDQALARMAATLRRFAASVG
Ga0066689_1070930113300005447SoilMTDVELARALERGEVPDDGFRHADHLRVAWVYLSESASVDDALARMAATLRGFAAA
Ga0066689_1100152623300005447SoilMTDTELARALERCEIPKEGFPHASHLRVAWVYLCESPTVEHAIDRMASTLR
Ga0070685_1095253323300005466Switchgrass RhizosphereMTNADAVALTRALERCEVPPEGFPHASHLRVAWVYLSETASLDEAIARMSATL
Ga0070698_10018802413300005471Corn, Switchgrass And Miscanthus RhizosphereMTDVELTRALERCEIPNEGVAHGSHLRVAWVYLTESASVEEATERMAVTL
Ga0070735_1022140323300005534Surface SoilMTDVELTRALERGQIPNDGFRHVDHLRVAWVYLEESPTVETAIARMAATLRHF
Ga0070684_10180532913300005535Corn RhizosphereMLNRDDVELARALERCEPPSAGFPHASHLRVAWVYLHECRSIDQAIDRMADTLRRFAVSVGQAGKYSDPTTAFWM
Ga0070697_10168437023300005536Corn, Switchgrass And Miscanthus RhizosphereMTAAEDVALARALERCEPPAAGFPHASHLRVAWVYLHESAGVEQALARMAATLKRFAASVGDAE
Ga0068853_10138954613300005539Corn RhizosphereVTDVEFARAFERGAVPNADFHHLDHLRVAWVYLDEASSVDEAIARMAAALRR
Ga0068856_10260469623300005614Corn RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGHAEKYSQAVTEF
Ga0068859_10089659413300005617Switchgrass RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGHAEKYSQ
Ga0066905_10013675523300005713Tropical Forest SoilMTDVELARALERGEIPNEGFHHVDHLRVALVYLNESPSVDVAVGRMASTLRRFAASVGKAEKYSQTVTEFWMYQMAAAR
Ga0068860_10260785523300005843Switchgrass RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGHAEKYSQAVTEFWMYQ
Ga0070717_1156778333300006028Corn, Switchgrass And Miscanthus RhizosphereMVSADDVALTRALERCEVPNDGFPHASHLHVAWVYLHESATIDGAIARMAATLRSFAAAVGKPEKYSDATTAFWML*
Ga0070717_1188231423300006028Corn, Switchgrass And Miscanthus RhizosphereMLSRDDVALTRALERGEPPAGGFPHASHLRVAWVYLHESPTIDEAIARMGETLRRFSASVGQAEKYSDAI
Ga0066652_10205138423300006046SoilMTDVELTRALERGEIPNQGFHHVDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGQAEKYSQAVTEFWMYQ
Ga0075024_10005381813300006047WatershedsMTNGDDIGLARALERGELPDEGFPHVSHLRVAWVYLHESASLDQAVGRMS
Ga0074049_1309654923300006580SoilMTDVELARALERCEIPNQGFHHVDHLRVALVYLNESDSVDAAVARM
Ga0066665_1122097913300006796SoilVTDVELARALERQQVPNEGSRHVDHLRVALVYLNESLSLDDAIGRMASTLRGFA
Ga0075428_10061713023300006844Populus RhizosphereMTDTELTRALERCEVPNTGFHHADHLRVALVYLNESPTIGDAIDRMAATLRRFATSVGQPQKYSQATTEFWMHQVAAVRAVMPDASADTLF
Ga0075425_10173438733300006854Populus RhizosphereMTDAELARTLERGQVPAGGFRHRDHLRVALVYLNESPTVAAAIDRMADTLVRFATSAGQPQKYSQPLTEFWMYQ
Ga0075434_10017680443300006871Populus RhizosphereMTDADLARALERCQIPNEGFPHASHLRVAWVYLRESATVEDAVERMASTL
Ga0068865_10133027523300006881Miscanthus RhizosphereMTDVELARALERCEIPNEGFHHVDHLRIALVYLNESPSVEAAVGRMASTLRRFAA
Ga0075424_10155421513300006904Populus RhizosphereMTDAEMTRALERCELPNHGFHHADHLRVALVYLDESATIGEAIDRMASTLRRFAI
Ga0105251_1029939623300009011Switchgrass RhizosphereMLNRDDVELARALERCEPPSAGFPHASHLRVAWVYLHECRSIDQAIDRMADTLRRFAVSVGQAGKYSDPTTAFW
Ga0111539_1253698423300009094Populus RhizosphereMTDVELARALERGEIPNEGFHHVDHLRVALVYLNESRSVDVAVGRMAS
Ga0066709_10288010123300009137Grasslands SoilMTDVELARALERGEVPNAGFHHADHLRVACVYLSEGASVDEALARMSGTLRRFAASVGRAEKYSDRI
Ga0114129_1329803913300009147Populus RhizosphereMTDTELTRALERGEVPNAGFHHADHLRVALVYLNESPTIDDAIDRMAATLRRFAASVGRPQKYSQ
Ga0075423_1300763623300009162Populus RhizosphereMTDTELARALERGDVPNAGFHHADHLRVALVYLNESPTIGEAIDRMAATLSRFAA
Ga0105242_1091799423300009176Miscanthus RhizosphereMTDVELTRALERCEVPNDGFHHIHHLRVALVYLNEAPSVDAAIDRMASTLRRFAASVGQAGKYSQAVTEFWMYQM
Ga0126382_1036266733300010047Tropical Forest SoilMAERDARSDIELTRNLERGEAPHDGFRHADHLRVALVYLNESATVAEAIDRMARTLRGFAASVGQPQKYSQSTTEFWMYQMAAARAVMPAAPA
Ga0099796_1041874213300010159Vadose Zone SoilMLKHDDVALARALERCEVPNEGFHHAEHLRVAWVYLQESATVDDALARMAATLRRFAAS
Ga0126377_1048104323300010362Tropical Forest SoilMAERNARSDIELTRTLEQGEAPQAGFRHADHLRVALVYLNESATVAEAIDRMASTLRRFAASVG
Ga0134128_1067658113300010373Terrestrial SoilMTDTELTRALERGELPPGAFHHAEHLRTALVYLNEAATVPEAIERMTATLRRFAAAAGQPDKFSRPVTEF
Ga0134127_1317330813300010399Terrestrial SoilMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGHAEKY
Ga0134121_1219077623300010401Terrestrial SoilMTTSDDVAMVRALERGEVSNGGFHHADHLRVAWVYLDECGSADAALARMA
Ga0134123_1065529413300010403Terrestrial SoilMVAADDVELTRALERCEPPGAGFHHASHLRVAWVYLNESASVDEALARM
Ga0105246_1143070613300011119Miscanthus RhizosphereMLNRDDVELARGLERCEIPSGGFPHASHLRVAWVYLHECRSIDQAIDRMAETLRRFAVSVGQA
Ga0137393_1105591813300011271Vadose Zone SoilMTDIELTRALERCEVPNEGFHHVDHLRVALVYLNESATVADAVDRLA
Ga0137389_1150818213300012096Vadose Zone SoilMTDIELTRALERCEVPNEGFHHVDHLRVALVYLNESATVADAVDRL
Ga0137390_1138752223300012363Vadose Zone SoilVAVSNPSDVALARAFERGEISNAGFHHASHLRVAWVYLHEHASVDEATAAIAAT
Ga0164302_1045261923300012961SoilMVGPHDVALARALERCEVPAGGFPHAAHLRVACVYLIECGSVDAAIARMAATLRSFSAA
Ga0157374_1232683113300013296Miscanthus RhizosphereMLNRDDVALARALERCEVPPEGFPHASHLRIAWVYLNESASLDHAVERMAATLRRFAASVGHANKYSEPTTVFWM
Ga0157378_1234419113300013297Miscanthus RhizosphereMPSRDDVKLARNLERGEAPADGFPHAAHLRVAWVYLNEAASLDAAVEQMAATLRAFAASV
Ga0163162_1133208513300013306Switchgrass RhizosphereMLNRADVELTRAIERCEPPGSGFPHASHLRVAWVYLHECESIDRAIERMAETLRRFAA
Ga0157379_1119876223300014968Switchgrass RhizosphereMLNRHDVELARGLERCGIPSGGFPHASHLRVAWVYLHECQSIDQAIARMAETLRRFAVSVGQAEKYSDPTT
Ga0132258_1238617413300015371Arabidopsis RhizosphereMPTDADVAMARALERGEVSNAGFHHADHLRVAWVYLEECGGADAAVARMAATLRRFTAAVGK
Ga0132256_10342165723300015372Arabidopsis RhizosphereVTDIELTRALERGDLPNAGFHHADHLRVALVYLNESPTIGDAIDRMAVTLRRFAASVGQPQKYSQATTEFWMHQVAAVRAVMPDAPADTLFAAF
Ga0132255_10553952713300015374Arabidopsis RhizosphereMTDVELARALERCEIPKQGFHHVDHLRVALVYLNESDSVDAAVARMASTLRG
Ga0132255_10627947013300015374Arabidopsis RhizosphereVTDVELTRALERCEIPNEGFAHGSHLRVAWVYLHECQSIDRAIARMAQT
Ga0134112_1050268613300017656Grasslands SoilMTDAELTRALERGEVPNEGFHHADHLRVAWVYLNESSSVDAAVDRMAGVLSAAGLRH
Ga0184618_1023892613300018071Groundwater SedimentLGGAVGLTRALERCEIPEDGFRHTSHLRVAWVYLTESATTDQAADRMAATLRRFAAA
Ga0173479_1051982123300019362SoilMTDTELTRALERGDVPNAGFHHADHLRVALVYLNESPTIGDAIARMATTLSRFAASVGQPQKYSQATTEFWMHQV
Ga0210384_1167586213300021432SoilMTDVELTRALERGELSNEGFHHADHLRVALVYLNEAPTVTIAIERMASTLRSF
Ga0222622_1069184913300022756Groundwater SedimentMTDAELTRALERGEVPNEGFHHADHLRVALVYLNESPSIDAAVGRMASTLSRFAASVGQ
Ga0207713_120200813300025735Switchgrass RhizosphereMLNRDDVELARALERCEPPSAGFPHASHLRVAWVYLHECRSIDQAIDRMADTLRRFAVSVGQAGKYSDPT
Ga0207642_1058935323300025899Miscanthus RhizosphereMTAAEDVALARALERCEPPAAGFPHASHLRVAWVYLHESAGVEQALARMAATLKRFAA
Ga0207645_1056054613300025907Miscanthus RhizosphereMPGSPDVELTRALERGEAPQAGFPHASHLRVAWVYLSESPTVDQALARMAATLRRFAASVGRAEKYSDA
Ga0207646_1081302823300025922Corn, Switchgrass And Miscanthus RhizosphereMTDVELARALERGEVPGDGFHHADHLRVAWVYLSESDSVDDALARMAATLHGFAAAVGKAEKYSDRIT
Ga0207694_1073626323300025924Corn RhizosphereMLNRDDVELARTLERCEPPSAGFPHASHLRVAWVYLHECRTIDQAIERMADTLRRFAISADQAGKYSDPTTAFWMLQ
Ga0207701_1010784713300025930Corn, Switchgrass And Miscanthus RhizosphereMTDTELTRALERGDVPNAGFHHADHLRVALVYLNESPTIGDAIARMATTLSRFAASVGQPQTYSQA
Ga0207706_1019514623300025933Corn RhizosphereMTRALERGQLPDEGFPHALHLRVAWVYLAESASVDEAIERMATTLRRFSQA
Ga0207669_1105158613300025937Miscanthus RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGHAEKYSQAVTEFWMFQMAAA
Ga0207669_1127605913300025937Miscanthus RhizosphereMVVATDVELTRALERCEVPNAGFPHASHLRVAWVYLCESASVDEALARMG
Ga0207679_1076634613300025945Corn RhizosphereMLNRDDVELARALERCEPPSAGFPHASHLRVAWVYLHECRSIDQAIDRMADTLRRFAISVGQ
Ga0207651_1121411713300025960Switchgrass RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAALVGHAEKYSQAVTEFWMYQ
Ga0207668_1029826823300025972Switchgrass RhizosphereMTDVELARALERCEIPNEGFHHVDHLRIALVYLNESPSVEAAVGRMAS
Ga0207668_1093333123300025972Switchgrass RhizosphereMIAADDVELTRALERCEPPSAGFPHASHLRVAWVYLNESASAAEALARMAD
Ga0207658_1153830523300025986Switchgrass RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMAS
Ga0207677_1042737133300026023Miscanthus RhizosphereMLNLDDVALARALERCEIPNEGFPHASHLRVAWVYLHESTSLDHAVACMAATLRRF
Ga0207677_1124353913300026023Miscanthus RhizosphereEVPAGGFPHAAHLRVAWVYLIECGSVDAAIARMAATLRSFSAAVGQAGKYSDAVTAF
Ga0207703_1055094523300026035Switchgrass RhizosphereMTDVELARALERGDVPNQGFHHLDHLRVALVYLNESDSVDAAVARMASTLKRFAASVGH
Ga0207641_1089990213300026088Switchgrass RhizosphereMTDLELARAFERGDIPNQGFHHIDHLRVALVYLNESDSVDAAVARMAST
Ga0207698_1131812613300026142Corn RhizosphereMVRPDDVALTRALERLEVPSEGFPHAYHLRVAWVYLHEAATIDDAITRMAATLRGFAASVGKAEKYSQ
Ga0209811_1012920933300027821Surface SoilMLNHNEVELTRALERGQPPADGFPHAAHLRVAWVYLNEAPSLDEAIERMSATLRG
Ga0209701_1007590233300027862Vadose Zone SoilVTPEADVGLARALERGEIPNNAFAHASHLRVAWVYLHESATVDEAAARIASTLRRFAASV
Ga0209814_1016340823300027873Populus RhizosphereMTDVELARALERCEIPNEGFHHVDHLRVALVYLNESPSVDVAVGRMASTLKKFAASIRQAEK
Ga0209488_1087638513300027903Vadose Zone SoilMPKRDDVATTRALERCELTNAGFHHALHLRVAWVYLDESASVDEAIDRMGTTLRRFAASVGKAEKYSQATMEFWMHQVAAVRALMPGA
Ga0207428_1073099913300027907Populus RhizosphereMTDTELTRALERGEVPNAGFHHADHLRVALVYLNESPTIDDAIDRMAATLRRFAASVGRPQKYSQATTEFWMHQVAAVRA
Ga0209168_1015505413300027986Surface SoilMTDVELTRALERGQIPNDGFRHVDHLRVAWVYLEESPTVETAIARMAATLRHFAA
Ga0307296_1011275813300028819SoilMPRDDAAMTRALERCELPNEGFHHALHLRVAWVYLAESASVDEAIERMG
Ga0170824_10638614923300031231Forest SoilMLNDEDIALARALERCEVPEGGFQHARHLRVAWVYLSESPSVDEAIARMTSTLRRFAASIGKA
Ga0307408_10120230213300031548RhizosphereMITESDLALTRALERGEVTNAGFPHVSHLRVAWVYLEESPTVDAALARMST
Ga0318500_1054334223300031724SoilMSDAELTRALERGEIPDAGFHHVDHLRVAWVYLDESPTVDAAVARMAGTLRR
Ga0306925_1200554013300031890SoilMTDAELARAFERGDLQNTAFHHADHLRVGWVYLQECATVDLALSRMRKTLRRFATRS
Ga0306923_1192227513300031910SoilMTDVELTRALERGEIPNEGFHHVDHLRVAWVYLEESTTVDEAVARMATTLRAFAASVGKPEKYSDAL
Ga0310885_1015495913300031943SoilMTDVELTRALERCEIPNEGFPHASHLRVAWVYLTESDSVEAATDRMAATLRKFAVSVGKAEK
Ga0310885_1081171913300031943SoilMIAADDVELTRALERCEPPNAGFRHASHLRVAWVYLNESASVAEALARMGDTLRL
Ga0318533_1035611223300032059SoilMTDVELTRALERGEIPNEGFHHVDHLRVAWVYLEESTTVDEAVARMA
Ga0308173_1190709923300032074SoilMLSRDDVDLTRAMERCEVPSGGFPHASHLRVAWVYLHESASLDAAIQRMGS
Ga0310890_1140582723300032075SoilMTDTELTRALERGEVPNAGFHHADHLRVALVYLNESPTIDDAIDRMAATLRRFAASV
Ga0247830_1107538913300033551SoilMIAADDVELTRALERCEPPSAGFPHASHLRVAWVYLNESASVAEALARMGDTLRLFAASVGH

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.