Metagenome Family F092222

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092222
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	62 residues
Representative Sequence	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS
Number of Associated Samples	37
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.87 %
% of genes near scaffold ends (potentially truncated)	32.71 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	33
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (82.243 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (49.533 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.393 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.03% β-sheet: 0.00% Coil/Unstructured: 68.97%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.23
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00491	Arginase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0010	Arginase/agmatinase family enzyme	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
All Organisms	root	All Organisms	17.76 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Viruses	superkingdom	All Organisms → Viruses	15.89 %
cellular organisms	root	All Organisms → cellular organisms	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	7.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Methylophilaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
unclassified Methylophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	82.24 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.41 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	7.48 %
Methylophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001717\|JGI24522J20083_1007953	Not Available	646	Open in IMG/M
3300001717\|JGI24522J20083_1010410	Not Available	550	Open in IMG/M
3300001735\|JGI24520J20079_1009893	Not Available	549	Open in IMG/M
3300001743\|JGI24515J20084_1002997	All Organisms → Viruses → Predicted Viral	1515	Open in IMG/M
3300002511\|JGI25131J35506_1006435	Not Available	1652	Open in IMG/M
3300002511\|JGI25131J35506_1006926	Not Available	1590	Open in IMG/M
3300002511\|JGI25131J35506_1015170	Not Available	1060	Open in IMG/M
3300002511\|JGI25131J35506_1018206	Not Available	966	Open in IMG/M
3300002511\|JGI25131J35506_1028706	Not Available	764	Open in IMG/M
3300002511\|JGI25131J35506_1030334	Not Available	743	Open in IMG/M
3300002511\|JGI25131J35506_1030618	Not Available	739	Open in IMG/M
3300002511\|JGI25131J35506_1033818	Not Available	704	Open in IMG/M
3300002511\|JGI25131J35506_1035641	Not Available	686	Open in IMG/M
3300002511\|JGI25131J35506_1049514	Not Available	582	Open in IMG/M
3300002511\|JGI25131J35506_1053279	Not Available	561	Open in IMG/M
3300002511\|JGI25131J35506_1053456	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	560	Open in IMG/M
3300002511\|JGI25131J35506_1061740	Not Available	521	Open in IMG/M
3300002511\|JGI25131J35506_1064119	Not Available	512	Open in IMG/M
3300002760\|JGI25136J39404_1021150	All Organisms → Viruses → environmental samples → uncultured virus	1180	Open in IMG/M
3300002760\|JGI25136J39404_1030027	Not Available	994	Open in IMG/M
3300002760\|JGI25136J39404_1032335	Not Available	960	Open in IMG/M
3300002760\|JGI25136J39404_1033591	Not Available	943	Open in IMG/M
3300002760\|JGI25136J39404_1039847	Not Available	866	Open in IMG/M
3300002760\|JGI25136J39404_1089306	Not Available	579	Open in IMG/M
3300002760\|JGI25136J39404_1094144	Not Available	563	Open in IMG/M
3300006304\|Ga0068504_1199927	Not Available	658	Open in IMG/M
3300006306\|Ga0068469_1161924	Not Available	583	Open in IMG/M
3300006306\|Ga0068469_1509314	Not Available	570	Open in IMG/M
3300006308\|Ga0068470_1341635	All Organisms → Viruses → Predicted Viral	1453	Open in IMG/M
3300006308\|Ga0068470_1386100	Not Available	678	Open in IMG/M
3300006308\|Ga0068470_1856538	Not Available	774	Open in IMG/M
3300006310\|Ga0068471_1190760	All Organisms → Viruses → environmental samples → uncultured virus	1984	Open in IMG/M
3300006310\|Ga0068471_1510804	Not Available	1498	Open in IMG/M
3300006310\|Ga0068471_1645765	All Organisms → Viruses → Predicted Viral	1901	Open in IMG/M
3300006311\|Ga0068478_1280223	Not Available	1137	Open in IMG/M
3300006325\|Ga0068501_1172311	Not Available	986	Open in IMG/M
3300006325\|Ga0068501_1216886	Not Available	825	Open in IMG/M
3300006325\|Ga0068501_1231431	Not Available	1191	Open in IMG/M
3300006325\|Ga0068501_1354268	Not Available	722	Open in IMG/M
3300006325\|Ga0068501_1355838	Not Available	1684	Open in IMG/M
3300006325\|Ga0068501_1501969	Not Available	677	Open in IMG/M
3300006326\|Ga0068477_1215562	All Organisms → Viruses → Predicted Viral	1091	Open in IMG/M
3300006326\|Ga0068477_1329073	Not Available	535	Open in IMG/M
3300006336\|Ga0068502_1222307	Not Available	1351	Open in IMG/M
3300006336\|Ga0068502_1355387	All Organisms → Viruses → Predicted Viral	2160	Open in IMG/M
3300006336\|Ga0068502_1364607	Not Available	1771	Open in IMG/M
3300006336\|Ga0068502_1368226	Not Available	1424	Open in IMG/M
3300006336\|Ga0068502_1374223	All Organisms → Viruses → environmental samples → uncultured virus	637	Open in IMG/M
3300006336\|Ga0068502_1416336	Not Available	595	Open in IMG/M
3300006336\|Ga0068502_1496748	Not Available	724	Open in IMG/M
3300006338\|Ga0068482_1361435	All Organisms → Viruses → Predicted Viral	1533	Open in IMG/M
3300006338\|Ga0068482_1484262	Not Available	659	Open in IMG/M
3300006338\|Ga0068482_1811492	Not Available	583	Open in IMG/M
3300006340\|Ga0068503_10333699	Not Available	1950	Open in IMG/M
3300006340\|Ga0068503_10390524	Not Available	3581	Open in IMG/M
3300006340\|Ga0068503_10428419	All Organisms → Viruses → environmental samples → uncultured virus	2442	Open in IMG/M
3300006340\|Ga0068503_10450202	Not Available	792	Open in IMG/M
3300006340\|Ga0068503_10455182	Not Available	2399	Open in IMG/M
3300006340\|Ga0068503_10472234	Not Available	2118	Open in IMG/M
3300006340\|Ga0068503_10488162	Not Available	829	Open in IMG/M
3300006340\|Ga0068503_10528392	Not Available	639	Open in IMG/M
3300006340\|Ga0068503_10576708	Not Available	1166	Open in IMG/M
3300006340\|Ga0068503_10582300	Not Available	797	Open in IMG/M
3300006340\|Ga0068503_10618450	Not Available	584	Open in IMG/M
3300006340\|Ga0068503_10626163	Not Available	635	Open in IMG/M
3300006340\|Ga0068503_10710817	Not Available	979	Open in IMG/M
3300006340\|Ga0068503_11139634	Not Available	1176	Open in IMG/M
3300006341\|Ga0068493_10434917	Not Available	1286	Open in IMG/M
3300006341\|Ga0068493_10507991	All Organisms → Viruses → Predicted Viral	1852	Open in IMG/M
3300006736\|Ga0098033_1218572	Not Available	525	Open in IMG/M
3300006751\|Ga0098040_1074751	All Organisms → Viruses → Predicted Viral	1034	Open in IMG/M
3300006927\|Ga0098034_1106136	Not Available	803	Open in IMG/M
3300017775\|Ga0181432_1174279	Not Available	668	Open in IMG/M
3300021442\|Ga0206685_10177992	Not Available	713	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10032265	Not Available	2757	Open in IMG/M
3300025042\|Ga0207889_1008910	Not Available	946	Open in IMG/M
3300025042\|Ga0207889_1020484	Not Available	618	Open in IMG/M
3300025042\|Ga0207889_1022558	Not Available	589	Open in IMG/M
3300025049\|Ga0207898_1010405	All Organisms → Viruses → environmental samples → uncultured virus	1143	Open in IMG/M
3300025049\|Ga0207898_1016981	Not Available	916	Open in IMG/M
3300025049\|Ga0207898_1039971	Not Available	590	Open in IMG/M
3300025050\|Ga0207892_1030658	Not Available	618	Open in IMG/M
3300025052\|Ga0207906_1011770	All Organisms → Viruses → environmental samples → uncultured virus	1227	Open in IMG/M
3300025069\|Ga0207887_1051845	Not Available	669	Open in IMG/M
3300025069\|Ga0207887_1088341	Not Available	503	Open in IMG/M
3300025125\|Ga0209644_1002158	Not Available	3741	Open in IMG/M
3300025125\|Ga0209644_1011934	Not Available	1821	Open in IMG/M
3300025125\|Ga0209644_1043856	All Organisms → Viruses → Predicted Viral	1015	Open in IMG/M
3300025125\|Ga0209644_1109829	Not Available	654	Open in IMG/M
3300025125\|Ga0209644_1145039	Not Available	566	Open in IMG/M
3300025128\|Ga0208919_1243155	Not Available	525	Open in IMG/M
3300025268\|Ga0207894_1045058	Not Available	771	Open in IMG/M
3300025873\|Ga0209757_10009464	All Organisms → Viruses → environmental samples → uncultured virus	2570	Open in IMG/M
3300025873\|Ga0209757_10045206	Not Available	1285	Open in IMG/M
3300025873\|Ga0209757_10113017	All Organisms → Viruses → environmental samples → uncultured virus	837	Open in IMG/M
3300025873\|Ga0209757_10126598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	792	Open in IMG/M
3300025873\|Ga0209757_10146409	Not Available	738	Open in IMG/M
3300025873\|Ga0209757_10166574	Not Available	693	Open in IMG/M
3300025873\|Ga0209757_10188065	Not Available	652	Open in IMG/M
3300025873\|Ga0209757_10204049	Not Available	626	Open in IMG/M
3300026213\|Ga0208131_1042549	Not Available	1126	Open in IMG/M
3300028039\|Ga0256380_1028428	Not Available	898	Open in IMG/M
3300032278\|Ga0310345_10741666	Not Available	953	Open in IMG/M
3300032820\|Ga0310342_100714471	Not Available	1150	Open in IMG/M
3300032820\|Ga0310342_102392138	Not Available	632	Open in IMG/M
3300034629\|Ga0326756_050748	Not Available	516	Open in IMG/M
3300034654\|Ga0326741_039914	Not Available	805	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	94.39%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.87%
Inlet	Environmental → Aquatic → Marine → Inlet	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.93%
Strait	Environmental → Aquatic → Marine → Strait	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	53.27%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	39.25%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	1.87%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	49.53%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	39.25%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	2.80%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	1.87%
Filtered Seawater	Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater	1.87%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.93%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001717	Marine viral communities from the Pacific Ocean - LP-47	Environmental	Open in IMG/M
3300001735	Marine viral communities from the Pacific Ocean - LP-45	Environmental	Open in IMG/M
3300001743	Marine viral communities from the Pacific Ocean - LP-38	Environmental	Open in IMG/M
3300002511	Marine viral communities from the Pacific Ocean - ETNP_2_1000	Environmental	Open in IMG/M
3300002760	Marine viral communities from the Pacific Ocean - ETNP_6_1000	Environmental	Open in IMG/M
3300006304	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_1000m	Environmental	Open in IMG/M
3300006306	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m	Environmental	Open in IMG/M
3300006308	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m	Environmental	Open in IMG/M
3300006310	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m	Environmental	Open in IMG/M
3300006311	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_1000m	Environmental	Open in IMG/M
3300006325	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0500m	Environmental	Open in IMG/M
3300006326	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT231_1_0770m	Environmental	Open in IMG/M
3300006336	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0500m	Environmental	Open in IMG/M
3300006338	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT232_1_0770m	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006341	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT236_2_0770m	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300021442	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015	Environmental	Open in IMG/M
3300024520 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1	Environmental	Open in IMG/M
3300025042	Marine viral communities from the Pacific Ocean - LP-47 (SPAdes)	Environmental	Open in IMG/M
3300025049	Marine viral communities from the Pacific Ocean - LP-55 (SPAdes)	Environmental	Open in IMG/M
3300025050	Marine viral communities from the Pacific Ocean - LP-54 (SPAdes)	Environmental	Open in IMG/M
3300025052	Marine viral communities from the Pacific Ocean - LP-37 (SPAdes)	Environmental	Open in IMG/M
3300025069	Marine viral communities from the Pacific Ocean - LP-38 (SPAdes)	Environmental	Open in IMG/M
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental	Open in IMG/M
3300025128	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (SPAdes)	Environmental	Open in IMG/M
3300025268	Marine viral communities from the Deep Pacific Ocean - MSP-114 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300026213	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV73 (SPAdes)	Environmental	Open in IMG/M
3300028039	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M
3300034629	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600	Environmental	Open in IMG/M
3300034654	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24522J20083_10079532	3300001717	Marine	MLVIKNKVLSWLDITVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRTKNLCIDCKDDS*
JGI24522J20083_10104101	3300001717	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEW
JGI24520J20079_10098931	3300001735	Marine	GLTVKVNRIINDSMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSNRAKNLCVDCKDDS
JGI24515J20084_10029971	3300001743	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKN
JGI25131J35506_10064352	3300002511	Marine	LTVIVNRIINDSMNDKEITYNTALDIVFMNRCHECGCTPKNDEWSDRAKNLCMNCKEDDS
JGI25131J35506_10069262	3300002511	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALNIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKDDS*
JGI25131J35506_10151702	3300002511	Marine	LTGIVNRIIDDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
JGI25131J35506_10182061	3300002511	Marine	LTXKVNRIINDSMNNKEITXNTALDIVFMNKCHDCGCTPKNDEWADRAKNLCIDCKNDD*
JGI25131J35506_10287061	3300002511	Marine	MNNIPLTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSNRAKNLCIDCQDDD*
JGI25131J35506_10303341	3300002511	Marine	VKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
JGI25131J35506_10306182	3300002511	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCKNDD*
JGI25131J35506_10338182	3300002511	Marine	MSFQLKINLYHGLTVKVNRIIDDGMNXKELTYNTALDIVFINKCHNCGCTPKNDEWSNRTKNLCIDCQDDS*
JGI25131J35506_10356412	3300002511	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
JGI25131J35506_10495142	3300002511	Marine	GLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE*
JGI25131J35506_10532791	3300002511	Marine	TVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE*
JGI25131J35506_10534563	3300002511	Marine	LTSIVNRIIDDVMNKKEITYNTALDIVFMNKCHECGCTPKNDEWSNREKNLCIDCKNDD*
JGI25131J35506_10617402	3300002511	Marine	HLTSIVNRIIDDSMNKKELTYNTALDIVFMNKCHNCGCTPKNDGWSNREKNLCRDCQEDDE*
JGI25131J35506_10641191	3300002511	Marine	IDNGVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCQDDD*
JGI25136J39404_10211503	3300002760	Marine	VKVNRIINDSMNKRELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD*
JGI25136J39404_10300271	3300002760	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWADRTKNLCIDCKTDEE
JGI25136J39404_10323351	3300002760	Marine	LTVKVNRIIDDGMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWADRAK
JGI25136J39404_10335912	3300002760	Marine	LTVKVNRIINDNMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSNREKNLCKDCKNDD*
JGI25136J39404_10398471	3300002760	Marine	LTVKVNRIIDDGMNYKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
JGI25136J39404_10893062	3300002760	Marine	LTVKVNRIINDSMNNKEITYNTALDIVXMNRCHDCGCTPKNDEWSDRAKNLCIDCQXDEE
JGI25136J39404_10941442	3300002760	Marine	YHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE*
Ga0068504_11999272	3300006304	Marine	MSFLLKINLYHGLTVKVNRIIEDGMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQEDNE*
Ga0068469_11619241	3300006306	Marine	MSFQLKIKLYHSLTAKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
Ga0068469_15093142	3300006306	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068470_13416352	3300006308	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCQDDS*
Ga0068470_13861001	3300006308	Marine	LTSIVNRIINDGMNNKEIAYNTALDTIFANKCHFCGCTPKNDEWADRAKNICIDCQDDS*
Ga0068470_18565382	3300006308	Marine	MSFQLKINLYHSLTAKVNRIINHSMNNKEITYNTALDIIFINKSHNCGCTPKNDEWSDRAKNLCIDCKNDS*
Ga0068471_11907602	3300006310	Marine	LLKTKLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRAKNLCIDCQEDNE*
Ga0068471_15108043	3300006310	Marine	MSFQLKINLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKKDEWSDRAKNLCIDCQNDEE*
Ga0068471_16457652	3300006310	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0068478_12802232	3300006311	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068501_11723112	3300006325	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068501_12168861	3300006325	Marine	INLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKKDEWSDRAKNLCIDCQNDEE*
Ga0068501_12314312	3300006325	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQNDEE
Ga0068501_13542682	3300006325	Marine	MSFQLKINLYHGLTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCQDDD*
Ga0068501_13558382	3300006325	Marine	LTVKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068501_15019691	3300006325	Marine	LTVKVNRIINDGMNNKEIPYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKNDDC
Ga0068477_12155622	3300006326	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCKNDD*
Ga0068477_13290732	3300006326	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSDRAKNLCIDCKNDD*
Ga0068502_12223072	3300006336	Marine	MSFQLKINLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKNDEWADRAKNLCIDCQNDEE*
Ga0068502_13553872	3300006336	Marine	LTSIVNRIINDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068502_13646073	3300006336	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWADKAKNLCIDCQKDVE
Ga0068502_13682262	3300006336	Marine	LTSKVNRIINDGMNNKEIAYNTALDTIFANKCHFCGCTPKNDEWADRAKNLCIDCQDDS*
Ga0068502_13742231	3300006336	Marine	LTSIVNRIIKDSINNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068502_14163362	3300006336	Marine	LTLKVNRIINDSMNERELTYNTALDIVFMNRCHDCGCTPKNDEWADRKNYLCIDCKNDDC
Ga0068502_14967482	3300006336	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNREKNLCIDCQDDDC
Ga0068482_13614353	3300006338	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0068482_14842621	3300006338	Marine	MSFLLKINLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKYDEWSNRAKNLCIDCQDDS*
Ga0068482_18114922	3300006338	Marine	LTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068503_103336992	3300006340	Marine	MSFLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRAKNLCIDCQDDD*
Ga0068503_103905244	3300006340	Marine	MNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCMDCKEDD*
Ga0068503_104284195	3300006340	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCQDDDC
Ga0068503_104502022	3300006340	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQEDE*
Ga0068503_104551822	3300006340	Marine	LTVKVNRIINDSMNDKEITYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCKDDD*
Ga0068503_104722344	3300006340	Marine	LTVKVNRIIDDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCRDCQDDS*
Ga0068503_104881622	3300006340	Marine	LLKINLYHGLTVKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCKNDD*
Ga0068503_105283921	3300006340	Marine	RIIYDDMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCQDDD*
Ga0068503_105767082	3300006340	Marine	LTSIVNRIIDDGMNNKEIAYQNTLDVMFANRCHDCGCTPKNDEWSDRTKNLCIDCKDDS*
Ga0068503_105823001	3300006340	Marine	LTVKVNRIINDDMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0068503_106184501	3300006340	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSNRAKNLC
Ga0068503_106261632	3300006340	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCRDDD*
Ga0068503_107108173	3300006340	Marine	LTAKVNRIINDSMNEKEITYNTALDIIFINKCHNCGCTPKNDEWSNRAKNLCIDCRNDD*
Ga0068503_111396342	3300006340	Marine	MNNKEITYNTALDIGFINKCHNCGCTPKNDEWSDRAKNLCIDCQDDD*
Ga0068493_104349171	3300006341	Marine	LTVKVNRIIDDGMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCRDCQDDS*
Ga0068493_105079913	3300006341	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS*
Ga0098033_12185721	3300006736	Marine	LTAKVNRIINDSMNNKEITYNTALDIVFMNRCHNCGCTPKKDEWSDRAKNLCIDCQDDD*
Ga0098040_10747512	3300006751	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS*
Ga0098034_11061362	3300006927	Marine	MSFLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNREKNLCIDCQDDS*
Ga0181432_11742791	3300017775	Seawater	MSFQLKINLYHSLTAKVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSNKAKNLCIDCEEEE
Ga0206685_101779922	3300021442	Seawater	VFSFIVKNKVINHLTSIVNRIINDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCQDDS
(restricted) Ga0255047_100322653	3300024520	Seawater	LTVKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD
Ga0207889_10089102	3300025042	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0207889_10204841	3300025042	Marine	YHGLTVKVNRIINDSMNYKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDD
Ga0207889_10225582	3300025042	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQD
Ga0207898_10104055	3300025049	Marine	LTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRTKNLCIDCKDDS
Ga0207898_10169813	3300025049	Marine	LTVKVNRIINDSMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSDRAKNLCIDCQNDEE
Ga0207898_10399712	3300025049	Marine	VNRIIDDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0207892_10306581	3300025050	Marine	MLVIKNKVLSWLDITVNRIIDDGMNEKELTYNTALDIVFMNRCHDCGCTPKNDEWSDRTKNLCIDCKDDS
Ga0207906_10117701	3300025052	Marine	YHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0207887_10518452	3300025069	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNREKNLCIDCKDDD
Ga0207887_10883411	3300025069	Marine	LTVKVNRIIDDGMNYKEITYNTALDIVFMNKCHNCGCTPKNDEWSDRA
Ga0209644_10021584	3300025125	Marine	LTVKVNRIIDDGMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWADKAKNLCIDCQNDEE
Ga0209644_10119344	3300025125	Marine	MNNIPLTVKVNRIIDDGMNEKELTYNTALDIVFMNRCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0209644_10438561	3300025125	Marine	LTVIVNRIINDSMNDKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDS
Ga0209644_11098292	3300025125	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS
Ga0209644_11450391	3300025125	Marine	MSFLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHDCGCTPKNDEWSDRAKNLCIDCEENNE
Ga0208919_12431552	3300025128	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKN
Ga0207894_10450581	3300025268	Deep Ocean	MFYLSVKLKIKLYHGLTLKVNRIIDDGMNNKEITYNTALDIVFMNRCHDCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0209757_100094645	3300025873	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALNIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCKDDS
Ga0209757_100452062	3300025873	Marine	LTAKVNRIINDSMNEKEITYNTALDIIFINKCHNCGCTPKNDEWSNRAKN
Ga0209757_101130171	3300025873	Marine	FISPLLKIKLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCIDCKNDEE
Ga0209757_101265981	3300025873	Marine	MSFLLKINLYHGLTVKVNRIIDDGMNEKELTYNTALDIVFINKCHNCGCTPKNDEWSNRTKNLCIDCQDDS
Ga0209757_101464093	3300025873	Marine	IYLLTAIVNRIINDSMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQDDD
Ga0209757_101665741	3300025873	Marine	LTAKVNRIINDSMNKKELTYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQ
Ga0209757_101880651	3300025873	Marine	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRTKNLCIDCQDDS
Ga0209757_102040492	3300025873	Marine	KVLNPIDIEVNRIINDSMNNKEITYNTALDIVFMNKCHNCGRTPKNDEWSNRAKNLCIDCKNDD
Ga0208131_10425491	3300026213	Marine	MSFQLKINLYHGLTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCQDDS
Ga0256380_10284281	3300028039	Seawater	GAVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCRNDDS
Ga0310345_107416662	3300032278	Seawater	LTSIVNRIINDGMNNKEIAYNTALDTIFANKCHFCGCTPKNDEWADRAKNLCIDCQDDS
Ga0310342_1007144711	3300032820	Seawater	LTVKVNRIINDSMNERELTYNTALDIVFMNKCHNCGCTPKNDEWSD
Ga0310342_1023921381	3300032820	Seawater	LTVKVNRIINDSMNEKELTYNTALDIVFMNKCHNCGCTPKNDEWSDRAKNLCIDCKNDD
Ga0326756_050748_2_190	3300034629	Filtered Seawater	TLLTVIVNRIIDDGMNNKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRAKNLCIDCQEDNE
Ga0326741_039914_2_193	3300034654	Filtered Seawater	LNPIDINVNRIINDSMNDKEITYNTALDIVFMNKCHNCGCTPKNDEWSNRTKNLCINCQEDNE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters