Metagenome Family F092383

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092383
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	45 residues
Representative Sequence	MSIRIVPAILAAAVSVAFGFPPANAQQKPQPPQSLRLYVLDCGI
Number of Associated Samples	88
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.13 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.290 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.430 % of family members)
Environment Ontology (ENVO)	Unclassified (28.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.271 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 31.94% β-sheet: 0.00% Coil/Unstructured: 68.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04909	Amidohydro_2	4.67
PF00903	Glyoxalase	3.74
PF08450	SGL	3.74
PF03992	ABM	2.80
PF00496	SBP_bac_5	1.87
PF04392	ABC_sub_bind	1.87
PF05378	Hydant_A_N	1.87
PF00248	Aldo_ket_red	1.87
PF00753	Lactamase_B	1.87
PF02604	PhdYeFM_antitox	0.93
PF01979	Amidohydro_1	0.93
PF13592	HTH_33	0.93
PF01522	Polysacc_deac_1	0.93
PF00596	Aldolase_II	0.93
PF01828	Peptidase_A4	0.93
PF00133	tRNA-synt_1	0.93
PF06035	Peptidase_C93	0.93
PF00144	Beta-lactamase	0.93
PF00701	DHDPS	0.93
PF05973	Gp49	0.93
PF00857	Isochorismatase	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	3.74
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	3.74
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	3.74
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.87
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.93
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.93
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.93
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.93
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.93
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.93
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.29 %
Unclassified	root	N/A	32.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.29 %
Unclassified	root	N/A	32.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.29 %
Unclassified	root	N/A	32.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.87 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	24.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	14.95 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.87 %
uncultured bacterium BLR9	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.41 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %
uncultured bacterium BLR9	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.30 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	3.74 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.74 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.87 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
uncultured bacterium BLR9	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.30 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.74 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.74 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
uncultured bacterium BLR9	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.30 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.74 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1.87 %
Mesorhizobium alhagi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium alhagi	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
uncultured bacterium BLR9	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	24.30 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	3.74 %
Amycolatopsis jejuensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis jejuensis	1.87 %
Mesorhizobium alhagi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium alhagi	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
uncultured bacterium BLR9	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_11842190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300005171\|Ga0066677_10598600	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	626	Open in IMG/M
3300005332\|Ga0066388_105137546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	664	Open in IMG/M
3300005332\|Ga0066388_105676107	Not Available	631	Open in IMG/M
3300005332\|Ga0066388_106051982	Not Available	611	Open in IMG/M
3300005575\|Ga0066702_10386458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	853	Open in IMG/M
3300005576\|Ga0066708_10985758	All Organisms → cellular organisms → Bacteria → Proteobacteria	524	Open in IMG/M
3300005719\|Ga0068861_100471031	All Organisms → cellular organisms → Bacteria → Acidobacteria	1129	Open in IMG/M
3300005764\|Ga0066903_101137436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1443	Open in IMG/M
3300005764\|Ga0066903_102635515	Not Available	975	Open in IMG/M
3300005764\|Ga0066903_105827275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300006032\|Ga0066696_10621904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis jejuensis	700	Open in IMG/M
3300006047\|Ga0075024_100794676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300006050\|Ga0075028_100743038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	594	Open in IMG/M
3300006162\|Ga0075030_101178790	Not Available	602	Open in IMG/M
3300006176\|Ga0070765_102014324	Not Available	540	Open in IMG/M
3300006800\|Ga0066660_10422879	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium alhagi	1106	Open in IMG/M
3300006844\|Ga0075428_100447268	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384	Open in IMG/M
3300006954\|Ga0079219_10636794	All Organisms → cellular organisms → Bacteria → Acidobacteria	792	Open in IMG/M
3300007255\|Ga0099791_10073636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1551	Open in IMG/M
3300009098\|Ga0105245_10248926	All Organisms → cellular organisms → Bacteria → Acidobacteria	1726	Open in IMG/M
3300009525\|Ga0116220_10104525	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300009683\|Ga0116224_10051308	Not Available	2014	Open in IMG/M
3300009792\|Ga0126374_11147123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300010359\|Ga0126376_10606967	Not Available	1036	Open in IMG/M
3300010359\|Ga0126376_11583800	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300010360\|Ga0126372_12771060	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	542	Open in IMG/M
3300010361\|Ga0126378_11840586	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300010362\|Ga0126377_11308337	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300010362\|Ga0126377_11880058	Not Available	674	Open in IMG/M
3300010362\|Ga0126377_12566785	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300010366\|Ga0126379_10931374	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300010366\|Ga0126379_11676599	Not Available	740	Open in IMG/M
3300010403\|Ga0134123_10670716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1009	Open in IMG/M
3300011270\|Ga0137391_10383643	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300011271\|Ga0137393_11323620	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300011423\|Ga0137436_1133663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300012096\|Ga0137389_10322780	Not Available	1310	Open in IMG/M
3300012189\|Ga0137388_11041817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300012202\|Ga0137363_10243057	Not Available	1461	Open in IMG/M
3300012205\|Ga0137362_10373294	Not Available	1235	Open in IMG/M
3300012351\|Ga0137386_11043402	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300012351\|Ga0137386_11108315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300012361\|Ga0137360_11464915	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300012362\|Ga0137361_10592125	All Organisms → cellular organisms → Bacteria	1016	Open in IMG/M
3300012683\|Ga0137398_10972525	Not Available	589	Open in IMG/M
3300012922\|Ga0137394_10968947	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300012927\|Ga0137416_10439950	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1112	Open in IMG/M
3300012927\|Ga0137416_10933078	Not Available	773	Open in IMG/M
3300012927\|Ga0137416_12149780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300012930\|Ga0137407_10824482	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300012971\|Ga0126369_10046208	Not Available	3691	Open in IMG/M
3300012971\|Ga0126369_13488573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300013297\|Ga0157378_11971786	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300015242\|Ga0137412_11086108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300015245\|Ga0137409_10438781	Not Available	1124	Open in IMG/M
3300015264\|Ga0137403_10495145	Not Available	1094	Open in IMG/M
3300016270\|Ga0182036_10560367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
3300016270\|Ga0182036_11049040	Not Available	673	Open in IMG/M
3300016294\|Ga0182041_11911518	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300016319\|Ga0182033_11668254	Not Available	577	Open in IMG/M
3300016371\|Ga0182034_11215270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300016371\|Ga0182034_11546348	Not Available	582	Open in IMG/M
3300016422\|Ga0182039_11546142	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300016422\|Ga0182039_11636168	Not Available	588	Open in IMG/M
3300017822\|Ga0187802_10246199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300017930\|Ga0187825_10404196	Not Available	525	Open in IMG/M
3300017959\|Ga0187779_10305820	Not Available	1018	Open in IMG/M
3300017997\|Ga0184610_1102782	Not Available	907	Open in IMG/M
3300018066\|Ga0184617_1272035	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300018086\|Ga0187769_10835434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300018088\|Ga0187771_11066825	Not Available	685	Open in IMG/M
3300021401\|Ga0210393_11132962	Not Available	631	Open in IMG/M
3300021420\|Ga0210394_11809890	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300021474\|Ga0210390_10523285	Not Available	998	Open in IMG/M
3300021477\|Ga0210398_11058225	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300021560\|Ga0126371_12368870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	642	Open in IMG/M
3300025926\|Ga0207659_11302691	Not Available	624	Open in IMG/M
3300026121\|Ga0207683_10330289	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium BLR9	1398	Open in IMG/M
3300026359\|Ga0257163_1005281	All Organisms → cellular organisms → Bacteria → Proteobacteria	1848	Open in IMG/M
3300027903\|Ga0209488_10067862	All Organisms → cellular organisms → Bacteria	2641	Open in IMG/M
3300027903\|Ga0209488_10567900	Not Available	826	Open in IMG/M
3300027905\|Ga0209415_10342111	All Organisms → cellular organisms → Bacteria	1252	Open in IMG/M
3300027911\|Ga0209698_11024417	Not Available	615	Open in IMG/M
3300028536\|Ga0137415_10024355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5983	Open in IMG/M
3300028536\|Ga0137415_11021329	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300030524\|Ga0311357_10148454	All Organisms → cellular organisms → Bacteria	2319	Open in IMG/M
3300031234\|Ga0302325_10148070	All Organisms → cellular organisms → Bacteria	4209	Open in IMG/M
3300031543\|Ga0318516_10100823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1632	Open in IMG/M
3300031572\|Ga0318515_10636685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300031719\|Ga0306917_10571430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	889	Open in IMG/M
3300031740\|Ga0307468_101332839	Not Available	655	Open in IMG/M
3300031753\|Ga0307477_10520397	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300031771\|Ga0318546_11328193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300031890\|Ga0306925_10784722	Not Available	990	Open in IMG/M
3300031910\|Ga0306923_11211975	All Organisms → cellular organisms → Bacteria → Acidobacteria	806	Open in IMG/M
3300031910\|Ga0306923_11298993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300032001\|Ga0306922_11790038	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
3300032060\|Ga0318505_10493178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300032076\|Ga0306924_11501062	Not Available	715	Open in IMG/M
3300032076\|Ga0306924_12140266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300032160\|Ga0311301_11016958	Not Available	1093	Open in IMG/M
3300032205\|Ga0307472_102468881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	528	Open in IMG/M
3300032515\|Ga0348332_13159334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis → Amycolatopsis jejuensis	512	Open in IMG/M
3300033289\|Ga0310914_10983610	Not Available	744	Open in IMG/M
3300033433\|Ga0326726_11234018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	727	Open in IMG/M
3300034090\|Ga0326723_0563106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	526	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.39%
Host-Associated	Host-Associated	5.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.98%
Aquatic	Environmental → Aquatic	8.41%
Plants	Host-Associated → Plants	5.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.31%
Sediment	Environmental → Aquatic → Sediment	6.54%
Peat	Environmental → Terrestrial → Peat	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.87%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.09%
Loam	Environmental → Terrestrial → Soil → Loam	8.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.25%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.87%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.87%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_118421903	3300000550	Soil	MSIRIVPVILMAAVSVAFGFSPANAQQPQPPQSPRLYVLDCGIITP
Ga0066677_105986002	3300005171	Soil	MSIRIVPAILAAAVSVAFGFSPVNAQQPQLSQSLRLYVLDCGIITPPNV
Ga0066388_1051375461	3300005332	Tropical Forest Soil	MSIRTVPYILAAAAFVAFGFPPANAQQKPQPPQSLRLYVLDCGII
Ga0066388_1056761071	3300005332	Tropical Forest Soil	MSIRIVHTILAAVALSFTSADAQPAKPQPPQSLRLYVLDCGII
Ga0066388_1060519821	3300005332	Tropical Forest Soil	MSIGIMPIRIASAILLAAVSAAVGVPPANAQQPQPPQSLRLYVL
Ga0066702_103864581	3300005575	Soil	MSIVSYVLAAAVSVAFGSLTANAQQPQNPQPPQSLRLYVLDCGKITPAVP
Ga0066708_109857581	3300005576	Soil	MSIRIMSIRIVPAILAAAVSVVFGFPPANAQQPQKPQPPQSLRLYVLDCGI
Ga0068861_1004710312	3300005719	Switchgrass Rhizosphere	MPIRIVPAILAVALSVVFGFPTANAQQPQRPQPVQSLRLYVL
Ga0066903_1011374361	3300005764	Tropical Forest Soil	MTVHIVPAILAAAVSVACGFLPAQAQQTQPPQSLRLYVLDCGIITPPTSTTTA*
Ga0066903_1026355151	3300005764	Tropical Forest Soil	MSIRTVPSILAAAAVFTAFGVPSANAQQKAQPPQSLRL
Ga0066903_1058272751	3300005764	Tropical Forest Soil	MSMRTMSIRIVPAILAAAASVAFGFAPANAQQPQPPQSLRLYVLDCGIIT
Ga0066696_106219041	3300006032	Soil	MSIHIVLAILAAAVSVAFGFPPANAQQPQKPQPPQSLRLYVLDCGIITP
Ga0075024_1007946761	3300006047	Watersheds	MSIRIVPAILAASVSVAFGFPPANAQQPQKPQPPQSLRLYVL
Ga0075028_1007430382	3300006050	Watersheds	MSIRIVPAILAAAMSVAFCFPPANAQQPQGPQPPQSLRLYVLDCGK
Ga0075030_1011787901	3300006162	Watersheds	MSIRIVPAVLAAAVFVAFGFPLANAQQPPAPQPPQSLRLYVLDCGII
Ga0070765_1020143242	3300006176	Soil	MSVRTVPCILAAVFMAFGFPPADAQQKPQPPQSLRLYVLDCG
Ga0066660_104228793	3300006800	Soil	MSIRIVSAIVVAAVSMVFGFTPASAQKPPSPQTLRLYVLDC
Ga0075428_1004472681	3300006844	Populus Rhizosphere	MSIRIVTAVLAAALCVALNFPPAFAQQPQRPQPPQSLRLYVLDCG
Ga0079219_106367942	3300006954	Agricultural Soil	MSHRLVLAILAAAFLALGFLPVNAQAQKAQSPQSLRLYVLDCG
Ga0099791_100736363	3300007255	Vadose Zone Soil	MFVREDPMSLRIVPAILAVAVSVAFGLLPVNAQQAQRPQSAQSLRLYVLDC
Ga0105245_102489261	3300009098	Miscanthus Rhizosphere	MPIRIVPAILAVALSVVFGFPTANAQQPQRPQPVQSPRLYVLDCGKITPANVD
Ga0116220_101045252	3300009525	Peatlands Soil	MSTRTVPYILAAAAFVAFGFPPANAQQKPQPPQSLRLYVFDCGIITPANVD
Ga0116224_100513081	3300009683	Peatlands Soil	MSIRIVPAILAAAMLVAFGFPTANAQQKPQPPQSLRLYVLDCGIITP
Ga0126374_111471231	3300009792	Tropical Forest Soil	MSIRIVPAILVTAVSVAFGFPPANAQQAQKPQPPQSLRLYILDCGKITPATPGEAY
Ga0126376_106069671	3300010359	Tropical Forest Soil	MSTRIVPAILAAGVSLAFGFPQANAQQNPQPPQSLRLYVLD
Ga0126376_115838002	3300010359	Tropical Forest Soil	MSIRIVPAILAAAMSVAFGSPPANAQQPQKPQPPQSLRLYVLD
Ga0126372_127710601	3300010360	Tropical Forest Soil	MSIRIVPYILAAVAFMAFGFPPTNAQQKPQPPQSLRLYVLDCGIITP
Ga0126378_118405862	3300010361	Tropical Forest Soil	MSIRIVPYILAAVAFMAFGFPPTNAQQKPQPPQSLR
Ga0126377_113083372	3300010362	Tropical Forest Soil	MSIRIVPAILAAAMSVAFGSPPANAQQPQKPQPPQSLRLYVLDCGKITP
Ga0126377_118800581	3300010362	Tropical Forest Soil	MSIRIVSAILVAAVSVAFGFTLAGAQQPQRPQPPQSLRLYVLDCG
Ga0126377_125667852	3300010362	Tropical Forest Soil	MSIRIVPYILAAVAFMAFGFPPTNAQQKPQPPQSLRLYVLDCG
Ga0126379_109313742	3300010366	Tropical Forest Soil	MSIRTMPYILAAVAFMAFGFPPTNAQQKSQPPQSLRLYVLDCGIITPPNVDN
Ga0126379_116765992	3300010366	Tropical Forest Soil	MSIRTVPAILAAAVFVAFGFPPAKAQQPQKPQPPQSLRLYVL
Ga0134123_106707161	3300010403	Terrestrial Soil	MSIRSVPAILAVALSVVFGFPPANAQQAQRPQPPQSLRLYVLDCGK
Ga0137391_103836431	3300011270	Vadose Zone Soil	MSIRIVPAILAAAVSVAFGFPSANAQQPQKPQPPQSLRLYV
Ga0137393_113236201	3300011271	Vadose Zone Soil	MPIRTVPCILTAAVLMAFGFPPANAQQPQKPQPPQSLRLYVLD
Ga0137436_11336632	3300011423	Soil	MSIRIVPAILAAAVSVAFGFSPANAQQPQPPQSLRLYVLDCGIITPPNVD
Ga0137389_103227802	3300012096	Vadose Zone Soil	MSIRTVPAILAAAVFMAFGFPPANAQQKPQPPQSLRLYVLDCGIIT
Ga0137388_110418171	3300012189	Vadose Zone Soil	MSIRTMPYILAAAMFGAFGFPPTNAQQKPQPPQSLRLYVLDCGIITP
Ga0137363_102430571	3300012202	Vadose Zone Soil	MSIRTVPYILAAAVFVAFGSPPTNAQQKPQPPQSLRLY
Ga0137362_103732942	3300012205	Vadose Zone Soil	MSIRTVPAILAAAVFMAFGFPPANAQQQQKPQPPQSLRL
Ga0137386_110434022	3300012351	Vadose Zone Soil	MPSPIVLAILATAVSVAFGFPPANAQQLPQPPQSLRLYVLDCGIITP
Ga0137386_111083152	3300012351	Vadose Zone Soil	MSIRIVPAILAAAVWVAFGFSPANAQQPQPPQSLRLYVLD
Ga0137360_114649152	3300012361	Vadose Zone Soil	MSIRIVPAILAAAVSAAFGFTPANAQQPQPPQSPRLYVLDCGIITPPNVDN
Ga0137361_105921251	3300012362	Vadose Zone Soil	MSIRAVPAILAAAVFVAFGFSPASAQQPQKPQPPQSLRLYVLDCG
Ga0137398_109725251	3300012683	Vadose Zone Soil	MSIRTMPYILAVAVFVAFGFPPANAQQKPQPPQSLRLYVLD
Ga0137394_109689472	3300012922	Vadose Zone Soil	MSIRIVPAILAAAISVAFGFPSANAQQPQKPQPPQSLRLYVLD
Ga0137416_104399502	3300012927	Vadose Zone Soil	MKRFVREDSMSIRIVPAILAAAVSAAFGFTPANAQQPQPPQSPRLYVLDCGIIT
Ga0137416_109330781	3300012927	Vadose Zone Soil	MSIRTVPAILAAAVFMAFGFPPANAQQPQPPQSLRLYVLDCG
Ga0137416_121497802	3300012927	Vadose Zone Soil	MFVREDPMSLRIVPAILAVALSVAFGLLPVNAQQAQRPQSPQSLRLYVVDCGIITPA
Ga0137407_108244822	3300012930	Vadose Zone Soil	MSIRIVPAILAAAVSVAFGFSPANAQQPQPPQSLRLYVLDCGI
Ga0126369_100462081	3300012971	Tropical Forest Soil	MSIGITSTRIVPAILMAAVSVAFGFPQANAQQNPQPPQSLRLYVLDCGIITP
Ga0126369_134885732	3300012971	Tropical Forest Soil	MSVRTVPFILAAAVFMASGFPAANAQQKPQPPQSLRLYVLDCGIITPPNVDN
Ga0157378_119717861	3300013297	Miscanthus Rhizosphere	MSLRTVSALLAAAVSVAFGLLPVNAQQAQRPQPQQSLRLYVLDCGIITP
Ga0137412_110861081	3300015242	Vadose Zone Soil	MSIRIVPAILAAAVSVAFGFPSANAQQPQRPQPPQSLRLYVLDCGRITPANVD
Ga0137409_104387812	3300015245	Vadose Zone Soil	MSIRIVPAILAAAVSVAFGFPSANAQQPQKPQPPQSLRLCVLDCGIITPASVEAY
Ga0137403_104951452	3300015264	Vadose Zone Soil	MSIRIVSAILTAAVSVAFGFSPANAQQPQPPQSLRLYVLDCGIITPPNLDN
Ga0182036_105603671	3300016270	Soil	MSIRIVPAILAAAVSVAFGFPPANAQPAQKPQPPQSLRL
Ga0182036_110490401	3300016270	Soil	MSNRTVPATLAAVMFMALGFPAADAQPKPQPPQSVRLYV
Ga0182041_119115182	3300016294	Soil	MSIRTVPTILAAALFVAFGVPPATAQQKPQPPQSLRLYVLDCGKITPA
Ga0182033_116682542	3300016319	Soil	MSIRIVPAILAAAVCFGLPLANAQPAKPQPPQSLRLYVLDC
Ga0182034_112152701	3300016371	Soil	MSIRTVPTILAAALFVAFGLPSANAQQKPQPPQSLRLYVLDCGKITP
Ga0182034_115463481	3300016371	Soil	MSIRIVPAILAAAVSAAFGFPASAQQPQKPQPPQSL
Ga0182039_115461422	3300016422	Soil	MSVRTVPFILAAAVFVAPGFPAANAQQKPQPPQSLRLYVLDCG
Ga0182039_116361683	3300016422	Soil	MSIRIVPTILAAAVSAVFGFPPADAQQPARPQTPQSLRLSVLDCGKI
Ga0187802_102461992	3300017822	Freshwater Sediment	MSVRTVPYIVAVAVFVAFGFPPANAQQKPQPPQSL
Ga0187825_104041961	3300017930	Freshwater Sediment	MSLRIQLASIAAVVSVVFGLLPVNAQNQKPPPPQSLRLYVLDCGII
Ga0187779_103058201	3300017959	Tropical Peatland	MSLRFVSAILVAALCVAFGFLPVNAQPQKPQPPQSLR
Ga0184610_11027821	3300017997	Groundwater Sediment	MSIRIVSAILTAAVSVVFGFSPANAQQPQPPQSLRLYVL
Ga0184617_12720351	3300018066	Groundwater Sediment	MSIRIMSAILMAAVFVAFGFSPANAQQPQPPQSLRLYVLDCGII
Ga0187769_108354342	3300018086	Tropical Peatland	MSIRTVPAILAAAVFVAFGFAPANAQQPQKPQPPQSLRLYVL
Ga0187771_110668252	3300018088	Tropical Peatland	MSIRIAPAILAAAVAFGFPSADAQPKPQPPQSLRLYVLDC
Ga0210393_111329621	3300021401	Soil	MSIRIVPAILAAAVSVALGFPPANAQQPQKPQPPQALRLYVLD
Ga0210394_118098901	3300021420	Soil	MSLRILPAILAAAVSVAFGLLPVNAQPQKPQPPQSLRLYVLDCGIIPPPTV
Ga0210390_105232851	3300021474	Soil	MSIRIVPAILAAAVSVALGFPLANAQQPQKPQPPQSLRLY
Ga0210398_110582252	3300021477	Soil	MSIRFAPAILAAAVSLAFGLLPANAQQTPQPPQSLR
Ga0126371_123688702	3300021560	Tropical Forest Soil	MSIRTVPHILAAAVFVAFGFPPADAQQQPQKPQPPQSLRLYVLDCGK
Ga0207659_113026911	3300025926	Miscanthus Rhizosphere	MSLRIVPAIVALAVSVALGLLPVNAQQAQRPQTQQSLRL
Ga0207683_103302893	3300026121	Miscanthus Rhizosphere	MSLRIVPAIVALAVSVALGLLPVNAQQAQRPQTQQSLRLYVLD
Ga0257163_10052812	3300026359	Soil	MSIRTVPYILAAAVFVAFGFPPANAQQKPQPPQSLRLYVLDCGKITP
Ga0209488_100678621	3300027903	Vadose Zone Soil	MSIRIVPCILAAAVFVAFGFPPANAQQKPQPPQSLRLYVLDCGIITPA
Ga0209488_105679002	3300027903	Vadose Zone Soil	MSIRTVPAILAAAVFMAFGFPPANAQQKPQPPQSLRLYVLDCGIITPA
Ga0209415_103421111	3300027905	Peatlands Soil	MSTRTVPYILAAAAFVAFGFPPANAQQKPQPPQSLRLYVLDCGII
Ga0209698_110244171	3300027911	Watersheds	MSIRIVPAVLAAAVFVAFGFPLANAQQPPAPQPPQSLRLYVLDCGIIT
Ga0137415_100243556	3300028536	Vadose Zone Soil	MSIRTVPCILTAAVLMAFGFPPANAQQPQKPQPPQSLRLYV
Ga0137415_110213291	3300028536	Vadose Zone Soil	MSIRIVFVMLVAAVSVAFGFMPANAQQPQRAQPPQSLRLYVLDCGGCA
Ga0311357_101484541	3300030524	Palsa	MSMRIVPAILAAAVCVAFGFPPADAQQSQKPQPPQSL
Ga0302325_101480705	3300031234	Palsa	MSMRIVPAILAAAVCVAFGFPPADAQQLQKPQPPQSLRLYVLDCGKITPAS
Ga0318516_101008233	3300031543	Soil	MSVRTVPFILAAAVFVAPGFPAANAQQKPQPPQSLRLYVLDCGIITPP
Ga0318515_106366851	3300031572	Soil	MTVRIVPAILAAAVSVACGFLPAQAQQTQPPQSLRLYVLDCGIITPPTSTTTA
Ga0306917_105714301	3300031719	Soil	MSIRTVPTILAAALFVAFGLPSANAQQKPQPPQSL
Ga0307468_1013328392	3300031740	Hardwood Forest Soil	MRIRFVPAILAAAVSVAVAFSANAQQPQPPQSLRIYILDC
Ga0307477_105203972	3300031753	Hardwood Forest Soil	MSLRILPAILATAVSVAFGLLPVNAQPQKPQPPQSLRLYVLDCGIITPPNVDN
Ga0318546_113281931	3300031771	Soil	MSIRIVPAILAAAVSVAFFPPANAQQPQKPQPPQSLRLYVLDCGIIT
Ga0306925_107847222	3300031890	Soil	MSIRTVPATLAAVMFMALGFPAADAQPKPQPPQSVRL
Ga0306923_112119752	3300031910	Soil	MTVHIVPAILAAAVSVACGFLPAQAQQTQPPQSLRLYVLDCGIITPPTSTTTA
Ga0306923_112989932	3300031910	Soil	MSIRTVPTILAAALFVAFGLPSANAQQKPQPPQSLRLYVLDCGKITPA
Ga0306922_117900383	3300032001	Soil	MSTRIAPAILAAAVAFGFPSAKAQQKPQPPQSLRLYVLDCGKITPATVENY
Ga0318505_104931781	3300032060	Soil	MSIHIVRSILAAAVFVALGFPPASAQQPRTPQPPQSLRLYVLDCGIITPPN
Ga0306924_115010622	3300032076	Soil	MSIRTVPATLAAVMFMALGFPAADAQPKPQPPQSVRLYVLDCGIIT
Ga0306924_121402661	3300032076	Soil	MSIRIVPAILAAAVSAAFGFPASAQQPQKPQPPQSLRLYVLDCGIITPASPGESF
Ga0311301_110169581	3300032160	Peatlands Soil	MSIRDSMSISIVPAILAAVVFVAFGFAPANAQQPQRPQPPQSLRLYVLDCGKIT
Ga0307472_1024688811	3300032205	Hardwood Forest Soil	MSIRIVPAILAAAVSVAFGFPPANAQQKPQPPQSLRLYVLDCGI
Ga0348332_131593342	3300032515	Plant Litter	MSIRTVPYILAAAAFVAFGVPPADAQQKPQPPQSL
Ga0310914_109836101	3300033289	Soil	MSIRIVLAILAAAASVAFGFSPANAQPQPPQSLRLYVLDCGKI
Ga0326726_112340181	3300033433	Peat Soil	MSLRVVSAILAVAVSVAFGLLPVDAQQAQRPQSPQSLRLYVLD
Ga0326723_0563106_386_526	3300034090	Peat Soil	MSIRIVSAILAAAVSVAFGFLPVNAQQAQKPQPSQSLRLYVLDCGII

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092383

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences