Metagenome / Metatranscriptome Family F092422

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092422
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	73 residues
Representative Sequence	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEAIEDAVAAPLAAA
Number of Associated Samples	72
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.44 %
% of genes near scaffold ends (potentially truncated)	23.36 %
% of genes from short scaffolds (< 2000 bps)	85.05 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.224 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (23.364 % of family members)
Environment Ontology (ENVO)	Unclassified (42.991 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (76.636 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.45% β-sheet: 29.13% Coil/Unstructured: 52.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02771	Acyl-CoA_dh_N	21.50
PF06568	DUF1127	6.54
PF13185	GAF_2	4.67
PF00196	GerE	2.80
PF02874	ATP-synt_ab_N	2.80
PF10415	FumaraseC_C	1.87
PF01654	Cyt_bd_oxida_I	1.87
PF02518	HATPase_c	1.87
PF01590	GAF	1.87
PF03306	AAL_decarboxy	0.93
PF05199	GMC_oxred_C	0.93
PF12762	DDE_Tnp_IS1595	0.93
PF02823	ATP-synt_DE_N	0.93
PF00378	ECH_1	0.93
PF06472	ABC_membrane_2	0.93
PF02775	TPP_enzyme_C	0.93
PF02515	CoA_transf_3	0.93
PF09361	Phasin_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	21.50
COG5457	Uncharacterized conserved protein YjiS, DUF1127 family	Function unknown [S]	6.54
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	1.87
COG3527	Alpha-acetolactate decarboxylase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG0355	FoF1-type ATP synthase, epsilon subunit	Energy production and conversion [C]	0.93
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.93
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.22 %
Unclassified	root	N/A	31.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.22 %
Unclassified	root	N/A	31.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.22 %
Unclassified	root	N/A	31.78 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.19 %
Unclassified	root	N/A	31.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.80 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.71 %
Unclassified	root	N/A	31.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	30.84 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	10.28 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	2.80 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.80 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.93 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.28 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	2.80 %
Starkeya	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya	0.93 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6.54 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	2.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
unclassified Starkeya	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → unclassified Starkeya	0.93 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.78 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	6.54 %
Mesorhizobium sp. AR10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR10	2.80 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.80 %
Starkeya sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → unclassified Starkeya → Starkeya sp.	0.93 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.93 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10000079	All Organisms → cellular organisms → Bacteria	27898	Open in IMG/M
3300001593\|JGI12635J15846_10092949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2179	Open in IMG/M
3300002245\|JGIcombinedJ26739_100304689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1477	Open in IMG/M
3300002245\|JGIcombinedJ26739_100312051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1456	Open in IMG/M
3300002245\|JGIcombinedJ26739_100599738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	978	Open in IMG/M
3300004080\|Ga0062385_10137190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1245	Open in IMG/M
3300004080\|Ga0062385_10162128	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300004082\|Ga0062384_100077600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1709	Open in IMG/M
3300004082\|Ga0062384_101007289	Not Available	596	Open in IMG/M
3300004082\|Ga0062384_101039663	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300004091\|Ga0062387_100184136	All Organisms → cellular organisms → Bacteria → Proteobacteria	1243	Open in IMG/M
3300004091\|Ga0062387_100785513	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300004091\|Ga0062387_101705664	Not Available	512	Open in IMG/M
3300004092\|Ga0062389_100128339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2330	Open in IMG/M
3300004092\|Ga0062389_101437492	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300004092\|Ga0062389_101853883	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300004092\|Ga0062389_103742304	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300004092\|Ga0062389_103948662	Not Available	557	Open in IMG/M
3300004092\|Ga0062389_104196278	Not Available	542	Open in IMG/M
3300004092\|Ga0062389_104567315	Not Available	521	Open in IMG/M
3300004635\|Ga0062388_102119811	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300004635\|Ga0062388_102735650	Not Available	520	Open in IMG/M
3300005435\|Ga0070714_101403128	All Organisms → cellular organisms → Bacteria → Proteobacteria	682	Open in IMG/M
3300005436\|Ga0070713_101457270	Not Available	664	Open in IMG/M
3300005439\|Ga0070711_101663551	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR10	559	Open in IMG/M
3300005439\|Ga0070711_101687356	Not Available	555	Open in IMG/M
3300005602\|Ga0070762_10698790	Not Available	680	Open in IMG/M
3300005614\|Ga0068856_102553797	Not Available	517	Open in IMG/M
3300005921\|Ga0070766_10925282	Not Available	598	Open in IMG/M
3300006102\|Ga0075015_100615816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	637	Open in IMG/M
3300006162\|Ga0075030_101358752	Not Available	557	Open in IMG/M
3300006176\|Ga0070765_100466286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1184	Open in IMG/M
3300006176\|Ga0070765_100997252	Not Available	792	Open in IMG/M
3300009522\|Ga0116218_1228747	Not Available	837	Open in IMG/M
3300009824\|Ga0116219_10089024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Starkeya → unclassified Starkeya → Starkeya sp.	1805	Open in IMG/M
3300010339\|Ga0074046_10049622	All Organisms → cellular organisms → Bacteria	2792	Open in IMG/M
3300010343\|Ga0074044_10001819	All Organisms → cellular organisms → Bacteria → Proteobacteria	18963	Open in IMG/M
3300010343\|Ga0074044_10016854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5361	Open in IMG/M
3300010343\|Ga0074044_10184897	Not Available	1387	Open in IMG/M
3300010379\|Ga0136449_104623423	Not Available	504	Open in IMG/M
3300010865\|Ga0126346_1164147	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300010865\|Ga0126346_1349920	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300010869\|Ga0126359_1332675	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300012683\|Ga0137398_11139441	Not Available	535	Open in IMG/M
3300012924\|Ga0137413_11282516	Not Available	587	Open in IMG/M
3300012924\|Ga0137413_11417526	Not Available	562	Open in IMG/M
3300012925\|Ga0137419_11647860	Not Available	546	Open in IMG/M
3300012989\|Ga0164305_12116331	Not Available	516	Open in IMG/M
3300014200\|Ga0181526_11042911	Not Available	514	Open in IMG/M
3300014501\|Ga0182024_12141428	Not Available	614	Open in IMG/M
3300015206\|Ga0167644_1004472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	8016	Open in IMG/M
3300015206\|Ga0167644_1028021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2318	Open in IMG/M
3300015206\|Ga0167644_1097712	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300020580\|Ga0210403_10544339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	941	Open in IMG/M
3300020580\|Ga0210403_10889454	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300020582\|Ga0210395_10044658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3244	Open in IMG/M
3300020582\|Ga0210395_10191912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1531	Open in IMG/M
3300020583\|Ga0210401_10209487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1807	Open in IMG/M
3300021168\|Ga0210406_10215598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1587	Open in IMG/M
3300021168\|Ga0210406_10315060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1269	Open in IMG/M
3300021168\|Ga0210406_10433429	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300021171\|Ga0210405_10158520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1793	Open in IMG/M
3300021178\|Ga0210408_10478279	All Organisms → cellular organisms → Bacteria → Proteobacteria	991	Open in IMG/M
3300021180\|Ga0210396_10263042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1532	Open in IMG/M
3300021180\|Ga0210396_10798318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	810	Open in IMG/M
3300021401\|Ga0210393_10355112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1193	Open in IMG/M
3300021401\|Ga0210393_10947637	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300021405\|Ga0210387_10575524	All Organisms → cellular organisms → Bacteria → Proteobacteria	1001	Open in IMG/M
3300021406\|Ga0210386_10915627	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300021433\|Ga0210391_10637364	Not Available	836	Open in IMG/M
3300021474\|Ga0210390_10548179	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300021475\|Ga0210392_10063776	All Organisms → cellular organisms → Bacteria → Proteobacteria	2316	Open in IMG/M
3300021477\|Ga0210398_10996285	Not Available	669	Open in IMG/M
3300021479\|Ga0210410_10747479	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300021479\|Ga0210410_10967495	Not Available	740	Open in IMG/M
3300025916\|Ga0207663_10241782	Not Available	1324	Open in IMG/M
3300026551\|Ga0209648_10132289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1996	Open in IMG/M
3300026555\|Ga0179593_1239083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2494	Open in IMG/M
3300027117\|Ga0209732_1059783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR10	663	Open in IMG/M
3300027334\|Ga0209529_1006923	All Organisms → cellular organisms → Bacteria → Proteobacteria	1826	Open in IMG/M
3300027505\|Ga0209218_1113675	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300027609\|Ga0209221_1011654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2274	Open in IMG/M
3300027692\|Ga0209530_1151454	Not Available	649	Open in IMG/M
3300027701\|Ga0209447_10073536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	937	Open in IMG/M
3300027729\|Ga0209248_10222270	Not Available	554	Open in IMG/M
3300027737\|Ga0209038_10130185	Not Available	762	Open in IMG/M
3300027737\|Ga0209038_10230880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	557	Open in IMG/M
3300027783\|Ga0209448_10215262	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300027783\|Ga0209448_10242892	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300027795\|Ga0209139_10007539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4098	Open in IMG/M
3300027795\|Ga0209139_10021646	Not Available	2313	Open in IMG/M
3300027854\|Ga0209517_10484664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	677	Open in IMG/M
3300027889\|Ga0209380_10590842	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300027895\|Ga0209624_10000720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	28650	Open in IMG/M
3300027895\|Ga0209624_10270055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1131	Open in IMG/M
3300027908\|Ga0209006_10453113	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1074	Open in IMG/M
3300027908\|Ga0209006_10866782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. AR10	727	Open in IMG/M
3300027911\|Ga0209698_10850065	Not Available	687	Open in IMG/M
3300028906\|Ga0308309_11020077	Not Available	717	Open in IMG/M
3300030730\|Ga0307482_1240690	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	565	Open in IMG/M
3300031231\|Ga0170824_124969072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	766	Open in IMG/M
3300031251\|Ga0265327_10470879	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300031718\|Ga0307474_10484830	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300031823\|Ga0307478_11365443	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300031823\|Ga0307478_11767416	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300032160\|Ga0311301_10093134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5993	Open in IMG/M
3300032180\|Ga0307471_103608061	Not Available	548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.13%
Host-Associated	Host-Associated	1.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.03%
Aquatic	Environmental → Aquatic	27.10%
Plants	Host-Associated → Plants	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.03%
Freshwater	Environmental → Aquatic → Freshwater	24.30%
Sediment	Environmental → Aquatic → Sediment	2.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.99%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	24.30%
Loam	Environmental → Terrestrial → Soil → Loam	23.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	24.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	23.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	13.08%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.67%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.67%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.80%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.80%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010865	Boreal forest soil eukaryotic communities from Alaska, USA - C3-3 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010869	Boreal forest soil eukaryotic communities from Alaska, USA - W4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_1000007929	3300001546	Forest Soil	MFPVTSRVTCLCAAPGVYRLYYQSRRVGEAVTIDNEALYVSHSSTENGRVVASLSAAARWLEAIEDAVAAPLAAA*
JGI12635J15846_100929491	3300001593	Forest Soil	MFPVTSRITCVRAMPGVYRLYYQSRRIGEAVTINIDALYVSHSSTENGRVVPSLRDAARWLESIEEADASHLAAA*
JGIcombinedJ26739_1003046892	3300002245	Forest Soil	MFPVTSRVTCVCAVPGVYWLYYQCRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA*
JGIcombinedJ26739_1003120512	3300002245	Forest Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNDALYVSHLLTESGRVVASLRDAARWLESIEEAGASHLAAA*
JGIcombinedJ26739_1005997381	3300002245	Forest Soil	MFPVTSNVTCVRAAPGVYRLYYQIRWVGYAVTIDNDALDVSHPFTESGRVFGSLRDAARWLESIED
Ga0062385_101371903	3300004080	Bog Forest Soil	MFPITSRVRCVRAAPGVYRLYYLSRWVGEAVTVDDDAFYVSHLCTESGRVVASLRDAARWLEVIEGAVTAPLAAA*
Ga0062385_101621281	3300004080	Bog Forest Soil	MFPLTFRVTCLNATPGVYRLYYQGRRVGEAVTIDDDTLYVSHLFTESGRVVASLGEAARWLEAIETTIAAPLAAA*
Ga0062384_1000776002	3300004082	Bog Forest Soil	MFPITSCVTCASAASGVYRLYYQGRWVGEVRTVGNDALRVSHSFTESRRFVGSLRDAARWLEAIEEAA*
Ga0062384_1010072891	3300004082	Bog Forest Soil	MFPITSRVTSVRSAPGVYRLYYRRRQIGEAVTIDNDSLYVSHSFTENGRVVASLRDAARWLEVIEDAVAAPLAAA*
Ga0062384_1010396631	3300004082	Bog Forest Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNEALYVSHLLTESGRVVASLRDAARWLEAIEEADASHLAAA*
Ga0062387_1001841361	3300004091	Bog Forest Soil	MFPITSRVTSVRSAPGVYRLYYRRRQIGEAVTIDNDSLYVSHSFTENGRVVASLRDAARWLE
Ga0062387_1007855131	3300004091	Bog Forest Soil	MFPVTSRVTCVCAAPGVYRLYYQSRRVGEAVTIDNEALYVSHSCTENGCVVASLSAAARWLEAIEEADAAPLAAA*
Ga0062387_1017056642	3300004091	Bog Forest Soil	MFPVTARVTCVRTMPGVYRLYYRSRRIGEAVTIDNDALYVSHSSTENGRVVASLRDAARWLE
Ga0062389_1001283391	3300004092	Bog Forest Soil	MFPITSCVTCASAASGVYRLYYQGRWVGEVRTVGNDALRVSHSFTESRRFVGSLRDAARWLE
Ga0062389_1014374922	3300004092	Bog Forest Soil	MFPITSCVTCASAAPGLYRLYYHGRWVGEVVTVGNDALHVSHAFTESRRFVGSLRDAARWLE
Ga0062389_1018538832	3300004092	Bog Forest Soil	MFPMTSRVTCVRAMPGVYRLYYHSRRVGEAVTIDNDSLYVSHSFTENGRVVASLRDAARWLEVIEDAVVAPLAAA*
Ga0062389_1037423041	3300004092	Bog Forest Soil	MFPVTSRVTCIRAMPGVYRLYYQSRRVGEAVTIDNEALYVSHLLTESGRVVASLRDAARWLEAIEEADASHLAAA*
Ga0062389_1039486621	3300004092	Bog Forest Soil	MFPIASCVTCVSAAPGVDRLHDQGRWVGEVVTVGNDALRVSHSFTESHRFVGSLRDAARWLEVIEGA*
Ga0062389_1041962781	3300004092	Bog Forest Soil	MFPITSRVVRAAPGVYRLYYQSRWVGDAVTVDNGALYVSHRVVVSLRDAACWLEAIEGAV
Ga0062389_1045673151	3300004092	Bog Forest Soil	VFPITSRVACVRTAPGIYRLYYQSRRVGEAVTIDNDALYVSHSFGESGRVVASFRDAARWPNAIEDAVAAPLAAA*
Ga0062388_1021198111	3300004635	Bog Forest Soil	MFPVTSRVTCIRAMPGVYRLYYQSHRVGEAVTIDSDALYVSHLLTESGRVVASLRDAARLLEAIEEADASHLAAA*
Ga0062388_1027356501	3300004635	Bog Forest Soil	MFPLTFRVTCLNATPGVYRLYYQGRRVGEAVTIDDDTLYVSHLFTESGRVVASLGEAARWLE
Ga0070714_1014031282	3300005435	Agricultural Soil	MFPVTSRVTCVCATPGVYRLYYQSRRVGEAVTIDSDGLYVSHSFTDRGRVVASLREAARWLEVIEDVVAVPVAA*
Ga0070713_1014572702	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFPVTSRVTCVCATPGVYRLYYQSRRVGEAVTIDSDGLYVSHSFTDGGRVVASLHEAACWLEAIEDMVAVPLAA*
Ga0070711_1016635512	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFPVTSRVAYVRAMPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEA
Ga0070711_1016873562	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MFPVTSRVTCVRAMPSVYRLHYQCRPVGEAVTIDNVALYVSHSFSESGRVVASLRDAARWLEAIEDAGAAPLAAA*
Ga0070762_106987902	3300005602	Soil	MFPVTSRVTCVCATPGVYRLYYQSRRVGEAVTIDSDGLYVSHSFTDRGRVVPSLREAARWLEVIEDVVAVP
Ga0068856_1025537971	3300005614	Corn Rhizosphere	MFPVTSRVTCVFATPGVYRLYYQSRRVGEAVMIDNDGLYVSHSPTENGRVVASLSAAARRLKAIEEAGASHLAAA*
Ga0070766_109252821	3300005921	Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDINALYVSHSFTESGRVVASLRAAARWLETIEEAEASSLAAA*
Ga0075015_1006158162	3300006102	Watersheds	MFPVTSRVTCVCAMPGVYRLYYDSRRVGEAVTVDNDALYVSHSSTESGRVVASLRDAARWLEAIEVAVAAPLAAA*
Ga0075030_1013587522	3300006162	Watersheds	MESRNVPDHFPRTCVRAGPGVYRLYYQSRGVGEAVTIDNEELYVSHSFTESLRDSAQWLEAIEGAVAAPLAA*
Ga0070765_1004662861	3300006176	Soil	IKLSVNGFRLAMERAMFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNEALYVSHLLTESGRVVASLRDAARWLESIEEAGASHLAAA*
Ga0070765_1009972523	3300006176	Soil	MFPVTSCVTCVCAVPGVYWLYYQCRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA*
Ga0116218_12287471	3300009522	Peatlands Soil	MFPITSRVTCVRAAPGVYRLYYQSRGVGEAVTVDNDAFYVSHSFTESGRIVASLRDAARWLESIEDAVAAPLAAA*
Ga0116219_100890241	3300009824	Peatlands Soil	MFPITSRVTCVRAAPGVYRLYYQSRGVGEAVTVDNDALYVSQLFTESGRVVASLRGAARWLESIEDAGAAPLAAA*
Ga0074046_100496222	3300010339	Bog Forest Soil	MFPITSRVTCVRAAPGVYRLYYQSRGVGEAVTVDNDALYVSHSFTESGHVVASLRDAARWLEAIEGAVAAPLAAA*
Ga0074044_1000181921	3300010343	Bog Forest Soil	MFPITSRVTCVGGTSGVYRLYYQSRWVGEAVIVDNDALYVSHSFTESGRVVASLRDAARWLESIEDVVAAPLAAA*
Ga0074044_100168546	3300010343	Bog Forest Soil	MFPITSQVSCLHAAPGVYRLYYHSRLVGEAMTVDNDAFYVSHAFTESGRVVLSLRDAAGWLEAIEGAVAAPLAAA*
Ga0074044_101848972	3300010343	Bog Forest Soil	MFPITSRVTCVRAAPGVYRLYYQSRQIGEAVTIDNDSLYVSHSFTESGRVVASLRDAARWLEATEGAVAAPLAAA*
Ga0136449_1046234231	3300010379	Peatlands Soil	MPGVYRLYYQSRRVGDTVTIDNDAFYVSHSSTESGSVVASLSAAARWLEAIEDAVAAPLAAA*
Ga0126346_11641473	3300010865	Boreal Forest Soil	LAMEKAMFPVTSRVTCIRAMPGVYRLYYQSRRVGEAVTIDSEALYVSHLLTESGRVVASLRDAARWVEAIEEADASHLAAA*
Ga0126346_13499202	3300010865	Boreal Forest Soil	MFPVTSRVTCVCAAPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEAIEDAVAAPLAAA*
Ga0126359_13326753	3300010869	Boreal Forest Soil	MPGFYRLYYQSRRVGEAVTIDSEALYVSHLLAESGRVVASLPDAARWLESIEEADASHLAAA*
Ga0137398_111394411	3300012683	Vadose Zone Soil	MPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEAIEEADAAPLAAA*
Ga0137413_112825161	3300012924	Vadose Zone Soil	MPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEAIEDAVAAPLAAA*
Ga0137413_114175261	3300012924	Vadose Zone Soil	MPDVYRLYYQCRWVGEAVTIDNDALYVSYSSTEIGSVVASLSDAARWLEAVEDAGAAPLAAA*
Ga0137419_116478601	3300012925	Vadose Zone Soil	MFPITSRVTCVRSAPGVYRLYYQGRWVGEAVTVDNDAFYVSRSFTESGRVVASLRDAARWLEASGDAVAAPLAAA*
Ga0164305_121163312	3300012989	Soil	MPGVYRLYYQSRRVGEAVTVDNNTLYVSHSFTQSGRVVASLRDAARWLEAIEEAEASPLAAA*
Ga0181526_110429111	3300014200	Bog	MFSINSRVTCVRAEPGVYRLFDQVRWANEAVSVDSSALYVSHSFTESGCVVASLPDAALRLEAIEGAVAAPLAVA*
Ga0182024_121414281	3300014501	Permafrost	MFPITSRVTCFCAAPGVYRLYCQSRWVGEAVTVDNDAFYVSHSLTDSGHLVASLRDAARWLEAIEGAVVTPLAAA*
Ga0167644_10044729	3300015206	Glacier Forefield Soil	MFPVTSRVTCVRAAPGVYRLYYQSRRVGEAVTIDNDALYVSHSPTENGRVVASLSAAARWLEAIEEADGSHLAAA*
Ga0167644_10280212	3300015206	Glacier Forefield Soil	MPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLGDAARPLEAIEDPGAAPLAAA*
Ga0167644_10977122	3300015206	Glacier Forefield Soil	MPGVYRLYYQSRRIGEAVTIDSDALYVSHSSTENGRVVASLSDAARWLESIEEVDASHLAA*
Ga0210403_105443392	3300020580	Soil	MFPITSRATCVRAAPGVYQLYYQSRQIGEAVTIDDDSLYVSHSFTESGRVVASLRDAARWLEAIDGAVAAPLAAA
Ga0210403_108894542	3300020580	Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDINALYVSHSFTESGRVVASLRAAARWLETIEEAEASPLAAA
Ga0210395_100446584	3300020582	Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNEALYVSHLLTESGRVVASLRDAARWLESIEEAGASHLAAA
Ga0210395_101919122	3300020582	Soil	MFPVTSRVTCVCAVPGVYWLYYQCRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA
Ga0210401_102094872	3300020583	Soil	MFPVTSCVTCVCAVPGVYWLYYQCRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA
Ga0210406_102155982	3300021168	Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDINALYVSHSFTESGRVVASLRAAARWLETIEEAEASSLAAA
Ga0210406_103150602	3300021168	Soil	MFPITSRVTCVRAAPGVYQLYYRSRQIGEAVTIDDDSLYVSHSFAESGRVVASLRDAARWLEAIDGAVAAPLAAG
Ga0210406_104334292	3300021168	Soil	MFPVTSAVTCVRAAPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAACWLEAIEDAVAAPLAAA
Ga0210405_101585203	3300021171	Soil	MFPVTSRVTCVCAMPGVYRLYYQSRRAGEAVTVDNDALYALYVSHSSTESGRVVASLSAAARWLEAIEDAVAAPLAAA
Ga0210408_104782792	3300021178	Soil	MFPLTSRVTCGRTMPDVYRFYYQSRPFGEAVAIDDAFYVAHSFTESGRVVASLRDAARWLESIEDAVPAPLAAA
Ga0210396_102630422	3300021180	Soil	MFPVTSRVTCVCAVPGVYWLYYQSRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA
Ga0210396_107983182	3300021180	Soil	MFPVTSRVTCVRATPGVYRLYYQCRRVREAVTIDNDALYVSHSSTESGRVVALLRDAARRLEAIEEAD
Ga0210393_103551121	3300021401	Soil	NGFRLAMERAMFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDINALYVSHSFTESGRVVASLRAAARWLETIEEAEASSLAAA
Ga0210393_109476371	3300021401	Soil	MFPVTSRVTCVRAAPGVYRLYYQSRRVGEAMTVDHDDAFYVSHSSTENGRVVASLGDAARWLEAIEDAVAAPLAAA
Ga0210387_105755243	3300021405	Soil	PGVYQLYYQSRQIGEAVTIDDDSLYVSHSFAESGRVVASLRDAARWLEAIDGAVAAPLAA
Ga0210386_109156272	3300021406	Soil	TPGVYRLYYQCRRVREAVTIDNDALYVSHSSTESGRVVALLRDAARRLESIEEADASPLAAA
Ga0210391_106373642	3300021433	Soil	MFPVTSRVTCVCAMPGVYRLYYQCRRVGEAVTIDNDALYVSHSSTENGRLVASLSAAARWLEAIEDAVAA
Ga0210390_105481792	3300021474	Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNEALYVSHSSTENGRVVASLSAAARWLESIEEADASHLAAA
Ga0210392_100637761	3300021475	Soil	MFPITSRATCVRAAPGVYQLYYQSRQIGEAVTIDDDPLYVSHSFTESGRVVASLRDAARWLEAIDGAVAAPLAAA
Ga0210398_109962852	3300021477	Soil	MFPVTSRVTCVCAMPGVYRLYYQCRRVGEAVTIDNDALYVSHSSTENGRLVASLSAAARWLEAIEDAVAAPLAAA
Ga0210410_107474791	3300021479	Soil	MFPVTSRVTCVRATPGVYRLYYQCRRVREAVTIDNDALYVSHSSTESGRVVALLRDAARRLESIEEADASPLAAA
Ga0210410_109674951	3300021479	Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDINALYVSHSFTESGRVVASPRDAARWLEAIEGTVAAPLAPA
Ga0207663_102417822	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MFPVTSRVTCVRAMPSVYRLHYQCRPVGEAVTIDNVALYVSHSFSESGRVVASLRDAARWLEAIEDAGAAPLAAA
Ga0209648_101322891	3300026551	Grasslands Soil	MFPITSHVTCVRAAPGVYRLYCESRWVGEAVTVDNDALYVSHSFAENGSVVASLRGAARWLEAIEGAVATDLAAA
Ga0179593_12390833	3300026555	Vadose Zone Soil	MFPVTSRVTCVCTMPGVYRLYYQCRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEAIEDAVPSHLAAA
Ga0209732_10597832	3300027117	Forest Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLSAAARWLEAIEDAVAAPLAAA
Ga0209529_10069232	3300027334	Forest Soil	MFPVTSRITCVRAMPGVYRLYYQSRRIGEAVTINIDALYVSHSSTENGRVVASLSAAARWLESIEEADASPLAAA
Ga0209218_11136751	3300027505	Forest Soil	SLDFGLPWRAAMFPVTSRVTCVCATPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRVVASLRDAARWLESIEEADASHLAAA
Ga0209221_10116542	3300027609	Forest Soil	MFPVTSRITCVRAMPGVYRLYYQSRRIGEAVTINIDALYVSHSSTENGRVVPSLRDAARWLESIEEADASHLAAA
Ga0209530_11514542	3300027692	Forest Soil	MFPVTSRVTCVCAAPGVYRLYYQSRRIGEAVTIDNDALYVSHSSTGNGRVVSSLSAAARWLEAIEEADASHLAAA
Ga0209447_100735361	3300027701	Bog Forest Soil	MFPVTSRVTCVRATAGVYRLYCQSRRVAEAVAIDYDELYMSHSFSEGVRVVASLPDAARWLEATEGAVAAPLAAA
Ga0209248_102222701	3300027729	Bog Forest Soil	MFPITSRVTCVRAAPGVYRLYYQSRQIGEAVTIGDDSLYVSHSFTENGRVVASLRDAARWLEAIEGAVAAPLAAA
Ga0209038_101301851	3300027737	Bog Forest Soil	MFPLTFRVTCLNATPGVYRLYYQGRRVGEAVTIDDDTLYVSHLFTESGRVVASLGEAARWLEAIETTIAAPLAAA
Ga0209038_102308801	3300027737	Bog Forest Soil	MFPVTSRVTCVCAMPGVYRLYYDSRRVGETVTIDNDALYVSHSFTESGRVVASLRDAARWLEATEGAVAAPLAAA
Ga0209448_102152622	3300027783	Bog Forest Soil	MFSITSRVTCVRTAPGVYRLYYQSRRVGDAVTVDNDTLYVSHSFTESGRVVASLRDAARWLEAIEDAVAAPLAAA
Ga0209448_102428922	3300027783	Bog Forest Soil	SFEIIKLSVNRFRLAMERAMFPVTARVTCVRTMPGVYRLYYRSRRIGEAVTIDNDALYVSHSSTENGRVVASLRDAARWLESIEEADASPLAAA
Ga0209139_100075395	3300027795	Bog Forest Soil	MFPVTSRVTCIRAMPGVYRLYYQSHRVGEAVTIDSDALYVSHLLTESGRVVASLRDAARLLEAIEEADASHLAAA
Ga0209139_100216462	3300027795	Bog Forest Soil	MFPITSRVTCVRAAPGVYRLYDRSRRIGEAVTIDDDSLYVSHSFTENGRVVASLRAAARWLEAIEGAVGAPLAAA
Ga0209517_104846642	3300027854	Peatlands Soil	MFPITSRVTCVRAAPGVYRLYYQSRGVGEAVTVDNDALYVSQLFTESGRVVASLRGAARWLESIEDAGAAPLAAA
Ga0209380_105908422	3300027889	Soil	FPVTSCVTCVCAVPGVYWLYYQCRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA
Ga0209624_100007202	3300027895	Forest Soil	MFPVTSRVTCLCAAPGVYRLYYQSRRVGEAVTIDNEALYVSHSSTENGRVVASLSAAARWLEAIEDAVAAPLAAA
Ga0209624_102700552	3300027895	Forest Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRVGEAVTIDNNALYVSHLLTESGRVVASLRDAARWLESIEEAGASHLAAA
Ga0209006_104531132	3300027908	Forest Soil	MFPVTSRVTCVRAMPGVYRLYYQSRRIGEAVTIDIDALYVSHSSTENGRVVPSLRDAARWLESIEEADASHLAAA
Ga0209006_108667821	3300027908	Forest Soil	MFPVTSRVTCLCAAPGVYRLYYQSRGVGEAVTIDNEALYVSHSSAENSRVVASLSAAARWLEAIED
Ga0209698_108500651	3300027911	Watersheds	MESRNVPDHFPRTCVRAGPGVYRLYYQSRGVGEAVTIDNEELYVSHSFTESLRDSAQWLEAIEGAVAAPLAA
Ga0308309_110200772	3300028906	Soil	MFPVTSRVTCVCAAPGVYRLYYQSRRVGEAVTIDNDALYVSHSSTENGRLVASLSAAARWLEAIEDAVAAPLAAA
Ga0307482_12406901	3300030730	Hardwood Forest Soil	RAAMFLITSRVTCVRAAADIYRLYYQCRQIGVAVAIDNDSLYVSHSFTESGRVVASLRDAARWFEAIDGAVAAPLAAA
Ga0170824_1249690721	3300031231	Forest Soil	MFPVTSRVTCVRAMPGVYRLYYRSRRVGEAVTIDNEALYVSHLLTESGHVVASLRDAARWLESIEEAGASHLAAA
Ga0265327_104708791	3300031251	Rhizosphere	MFPLTLRVTCLRATPGVYRLYYQGRRVGEAVTIDDDTLYASHLFTESGRVVASLGEAARWLEAIETTIAAPLAAA
Ga0307474_104848302	3300031718	Hardwood Forest Soil	MFPVTSEVTCVRAIPGVYRLYYQSRRVAEAVTINHDALYVSHLFAETGRVVASLRDAARWLEAIEAADVSFRAAA
Ga0307478_113654432	3300031823	Hardwood Forest Soil	TSRVTCVCAVPGVYWLYYQCRRVGEAVTIDNETLYVSHSSAENGRVVASLSAAARWLEAIEDAEVSPLAA
Ga0307478_117674161	3300031823	Hardwood Forest Soil	VRARPSVYRLYYQCRRVGEAVTIHDEALYVSHLLTETGRVVASLRDAARWLESIEEADASHLAVA
Ga0311301_100931342	3300032160	Peatlands Soil	MFPITSRVTCVRAAPGVYRLYYQSRGVGEAVTVDNDAFYVSHSFTESGRIVASLRDAARWLESIEDAVAAPLAAA
Ga0307471_1036080612	3300032180	Hardwood Forest Soil	MPGVYRLYHQSRRVGEAVTIDNDALYVSHSSTESSRVVASLSDAARWLEAIEDTVVTPLAAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092422

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences