NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F092423

Metagenome Family F092423

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092423
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 91 residues
Representative Sequence TVEAYEGLRRQVVQPDGRGEHLEGRGVLMRCGLATWAQSRPAAVPARPPESHFPSGPQAPVLDSFGAELVRLVAGLILSTRQEGFLHA
Number of Associated Samples 104
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 42.99 %
% of genes near scaffold ends (potentially truncated) 52.34 %
% of genes from short scaffolds (< 2000 bps) 73.83 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(11.215 % of family members)
Environment Ontology (ENVO) Unclassified
(23.364 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(40.187 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.83%    β-sheet: 0.00%    Coil/Unstructured: 55.17%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00239Resolvase 38.32
PF13551HTH_29 13.08
PF13565HTH_32 12.15
PF13408Zn_ribbon_recom 11.21
PF07508Recombinase 6.54
PF13518HTH_28 6.54
PF08483Obsolete Pfam Family 1.87
PF00665rve 1.87
PF09084NMT1 0.93
PF02195ParBc 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 44.86
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 38.32
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 1.87
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 1.87
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 1.87
COG4584TransposaseMobilome: prophages, transposons [X] 1.87
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 0.93
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2228664022|INPgaii200_c0937447All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium953Open in IMG/M
3300004463|Ga0063356_100245266All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium2165Open in IMG/M
3300005332|Ga0066388_106233496All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300005364|Ga0070673_100783634All Organisms → cellular organisms → Bacteria879Open in IMG/M
3300005466|Ga0070685_11021315All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300005530|Ga0070679_100061208All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3752Open in IMG/M
3300005563|Ga0068855_102025238All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300005578|Ga0068854_100963303All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300005944|Ga0066788_10027176All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → Burkholderia cepacia complex → Burkholderia contaminans1291Open in IMG/M
3300006052|Ga0075029_100264399All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1090Open in IMG/M
3300006059|Ga0075017_100022370All Organisms → cellular organisms → Bacteria4114Open in IMG/M
3300006162|Ga0075030_100134561All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium2003Open in IMG/M
3300006176|Ga0070765_100432208All Organisms → cellular organisms → Bacteria1232Open in IMG/M
3300009012|Ga0066710_100673282All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1576Open in IMG/M
3300009153|Ga0105094_10040171All Organisms → cellular organisms → Bacteria2579Open in IMG/M
3300009156|Ga0111538_10582781All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1418Open in IMG/M
3300009177|Ga0105248_10391167All Organisms → cellular organisms → Bacteria1565Open in IMG/M
3300009628|Ga0116125_1009514All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2522Open in IMG/M
3300009644|Ga0116121_1121601All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300010036|Ga0126305_10021331All Organisms → cellular organisms → Bacteria3422Open in IMG/M
3300010341|Ga0074045_10080138All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2287Open in IMG/M
3300010358|Ga0126370_10103673All Organisms → cellular organisms → Bacteria1974Open in IMG/M
3300010359|Ga0126376_10028919All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3720Open in IMG/M
3300010371|Ga0134125_11435897All Organisms → cellular organisms → Bacteria752Open in IMG/M
3300010373|Ga0134128_10092618All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3438Open in IMG/M
3300010376|Ga0126381_100230049All Organisms → cellular organisms → Bacteria → Acidobacteria2498Open in IMG/M
3300010396|Ga0134126_11183274All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300011271|Ga0137393_10488093All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1057Open in IMG/M
3300012201|Ga0137365_10074865All Organisms → cellular organisms → Bacteria2554Open in IMG/M
3300012205|Ga0137362_10257882All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1507Open in IMG/M
3300012209|Ga0137379_10933345All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium772Open in IMG/M
3300012357|Ga0137384_11329449All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300012361|Ga0137360_10437323All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1107Open in IMG/M
3300012362|Ga0137361_10962531All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300012363|Ga0137390_10896232All Organisms → cellular organisms → Bacteria842Open in IMG/M
3300012951|Ga0164300_10479797All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae705Open in IMG/M
3300012958|Ga0164299_10179399All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1203Open in IMG/M
3300012961|Ga0164302_10110361All Organisms → cellular organisms → Bacteria1541Open in IMG/M
3300012986|Ga0164304_10298996All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300012989|Ga0164305_10545147All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae922Open in IMG/M
3300013307|Ga0157372_11815691All Organisms → cellular organisms → Bacteria701Open in IMG/M
3300013307|Ga0157372_12213036All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300013770|Ga0120123_1040741All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium982Open in IMG/M
3300014159|Ga0181530_10106156All Organisms → cellular organisms → Bacteria1670Open in IMG/M
3300014325|Ga0163163_11976183All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300014489|Ga0182018_10115709All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1558Open in IMG/M
3300014490|Ga0182010_10386409All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300014501|Ga0182024_12277338All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300014884|Ga0180104_1001392All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4879Open in IMG/M
3300017659|Ga0134083_10392293All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium604Open in IMG/M
3300017789|Ga0136617_10317002All Organisms → cellular organisms → Bacteria1279Open in IMG/M
3300017946|Ga0187879_10021807All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3947Open in IMG/M
3300018007|Ga0187805_10281384All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300018034|Ga0187863_10034523All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2968Open in IMG/M
3300018062|Ga0187784_10360697All Organisms → cellular organisms → Bacteria1177Open in IMG/M
3300018422|Ga0190265_10095072All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2774Open in IMG/M
3300018469|Ga0190270_12595485All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300018476|Ga0190274_10780908All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1010Open in IMG/M
3300018481|Ga0190271_10239976All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1837Open in IMG/M
3300019787|Ga0182031_1091869All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium831Open in IMG/M
3300019886|Ga0193727_1013590All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3062Open in IMG/M
3300020170|Ga0179594_10428706All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300021171|Ga0210405_10228320All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1474Open in IMG/M
3300021420|Ga0210394_11831196All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300021477|Ga0210398_10027899All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4748Open in IMG/M
3300021477|Ga0210398_10739224All Organisms → cellular organisms → Bacteria795Open in IMG/M
3300022756|Ga0222622_10552195All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium827Open in IMG/M
3300025913|Ga0207695_10369740All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1320Open in IMG/M
3300025921|Ga0207652_10108529All Organisms → cellular organisms → Bacteria2460Open in IMG/M
3300025945|Ga0207679_11548777All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300026041|Ga0207639_11484971All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300026088|Ga0207641_10864913All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium897Open in IMG/M
3300026528|Ga0209378_1183496All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300027660|Ga0209736_1023178All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1889Open in IMG/M
3300027698|Ga0209446_1109456All Organisms → cellular organisms → Bacteria710Open in IMG/M
(restricted) 3300027799|Ga0233416_10022131All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2103Open in IMG/M
3300027903|Ga0209488_10011433All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae6505Open in IMG/M
3300027911|Ga0209698_10036737All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4423Open in IMG/M
3300028590|Ga0247823_10297969All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1220Open in IMG/M
3300028592|Ga0247822_11863437All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300028806|Ga0302221_10197330All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300028889|Ga0247827_10731735All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
3300028906|Ga0308309_10264505All Organisms → cellular organisms → Bacteria1444Open in IMG/M
3300029882|Ga0311368_10240775All Organisms → cellular organisms → Bacteria1404Open in IMG/M
3300030002|Ga0311350_11820737All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M
3300030056|Ga0302181_10275752All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300030503|Ga0311370_10268644All Organisms → cellular organisms → Bacteria → Acidobacteria2232Open in IMG/M
3300031231|Ga0170824_116689309All Organisms → cellular organisms → Bacteria755Open in IMG/M
3300031344|Ga0265316_10387503All Organisms → cellular organisms → Bacteria1008Open in IMG/M
3300031474|Ga0170818_104414108All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae972Open in IMG/M
3300031525|Ga0302326_10008349All Organisms → cellular organisms → Bacteria22865Open in IMG/M
3300031543|Ga0318516_10032484All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2763Open in IMG/M
3300031708|Ga0310686_111679267All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium602Open in IMG/M
3300031797|Ga0318550_10515520All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300031819|Ga0318568_10927743All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300031939|Ga0308174_10032525All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3375Open in IMG/M
3300031942|Ga0310916_11577473All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium533Open in IMG/M
3300031965|Ga0326597_12004532All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300032013|Ga0310906_10979631All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300032261|Ga0306920_102566051All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300032261|Ga0306920_103474947All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300033158|Ga0335077_11392086All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300033407|Ga0214472_10006216All Organisms → cellular organisms → Bacteria12520Open in IMG/M
3300033829|Ga0334854_004250All Organisms → cellular organisms → Bacteria3494Open in IMG/M
3300034149|Ga0364929_0314539All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300034177|Ga0364932_0177490All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300034354|Ga0364943_0137985All Organisms → cellular organisms → Bacteria873Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil11.21%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.67%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.67%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds3.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.80%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.80%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment2.80%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.80%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.87%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.87%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.87%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.87%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.93%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.93%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.93%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.93%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.93%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.93%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.93%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.93%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.93%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.93%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.93%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.93%
BogEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Bog0.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.93%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.93%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.93%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.93%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.93%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005944Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009153Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009628Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10EnvironmentalOpen in IMG/M
3300009644Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10EnvironmentalOpen in IMG/M
3300010036Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26EnvironmentalOpen in IMG/M
3300010341Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013770Permafrost microbial communities from Nunavut, Canada - A15_5cm_18MEnvironmentalOpen in IMG/M
3300014159Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014489Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaGEnvironmentalOpen in IMG/M
3300014490Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014884Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT730_16_1DaEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017789Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019787Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026528Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028590Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30EnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028806Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028889Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030002II_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300030056Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_3EnvironmentalOpen in IMG/M
3300030503III_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031965Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185EnvironmentalOpen in IMG/M
3300032013Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033407Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175EnvironmentalOpen in IMG/M
3300033829Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5EnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M
3300034354Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
INPgaii200_093744722228664022SoilIPAGTVEAYEGLRRQVVQPDGRGGHLEGRGILMRCGLATWAQNRPAVVTARPLESHFPSGPEAPVLDSFGGELVRLVAGLILSTRQEGFPHA
Ga0063356_10024526623300004463Arabidopsis Thaliana RhizosphereVEAYEGLRRQVVQLDGRVEHLESRGILLRRGLAAWSQLRRSTVPAPLPESHFRPASESPVPTSFGAELVRLVAGLILSTRQESFLHA*
Ga0066388_10623349623300005332Tropical Forest SoilLRSPIAEGAVEAYEQLRRQVVQPDGRGGDLESRRIVMRCGLALWAQMAPSVEPIPSGESHFPAGVEAPVLSSLGAELVRLMASLILSTRQEGLSACLN*
Ga0070673_10078363413300005364Switchgrass RhizosphereVDAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRTTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA*
Ga0070685_1102131523300005466Switchgrass RhizosphereVDAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRPTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA*
Ga0070679_10006120823300005530Corn RhizosphereMPDGAVEAYEALRRQSVQPDGRGEHLEGRGVLMRCGLATWAQLRCAAVSARPPQSHVSSGAEAPALDSFGVELVRLVAGLILSARLEGFLHA*
Ga0068855_10202523813300005563Corn RhizosphereVTSSMPDGAVEAYEALRRQSVQPDGRGEHLEGRGVLMRCGLATWAQLRCAAVSARPPQSHVSSGAEAPALDSFGVELVRLVAGLILSARLEGFLHA*
Ga0068854_10096330323300005578Corn RhizosphereMPDGAVEAYEALRRQSVQPDGRGEHLEGRGVLMRCGLATWAQLRCAAVSARPPQSHVSSGAEAPALDSFGVELVRLVAGLILSARLEGFL
Ga0066788_1002717643300005944SoilVEAYEGLRRQAVQPDGRGEHLEGRGVLMRTGLATWAQIGNAAVPAHPPEAHFSSGSGAPVRGSFGA
Ga0075029_10026439923300006052WatershedsMPEGTVEAYEGLRRQVVQPDGGREGLESRRILMRRGLASWAEIISAAVPARTPESHLQAPCESPVLDSLGVELVRLVAGLILGIRQEGFVHA*
Ga0075017_10002237023300006059WatershedsMPEGTLEAYEGLRRQVVQPDEGREGLESRRILMRRGLAPWAEIISAAVPARTPESHLQSACESPVLDSLGVELVRLVAGLILGIRQEGFVHA*
Ga0075030_10013456123300006162WatershedsMPEGTVEAYEGLRRQVVQPDGGREGLESRRILMRRGLAPWAEIISAAVPARTPESHLQSACESPVLDSLGVELVRLVAGLILGIRQEGFVHA*
Ga0070765_10043220823300006176SoilVTSPIPEGTVEAYEGLRGQVIQPDGRGGHLEGRGVLVRYGLASWAHSRLAAVPARLPESHFPSGIDASALDSIGLELVRLVASLILSARQEGFLHA*
Ga0066710_10067328213300009012Grasslands SoilVEAYERLRRQVVQPDGRVEYLEGRGILMRCGLAAWSQLRPPTVAARPPESHFQSVSESPVLTSVGAELVRLVAGLILST
Ga0105094_1004017113300009153Freshwater SedimentKTAQAGVGSPLAEGSVQAYEGLRQQVVQPDRRGEHPEGRGLLMRCGLAAWAQIRPTAVPQRRPESNFPSGSQTLVLESFGAELVRLVAGLILSTRQEGVLHG*
Ga0111538_1058278123300009156Populus RhizosphereVEAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRPTAISVRPSESHSPSKPDTPALDSFGSELVRLLAGLILSTRQESFVACLN*
Ga0105248_1039116723300009177Switchgrass RhizosphereMPEGTVEAYEGLRRQVVQPDGRGEHLEGRGVLMRCGLATWAQSGPATVSARPLESHLPSGPEAPVLDSSGAELVRLVAGLILSTRQELFLHA*
Ga0116125_100951423300009628PeatlandVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLILGIRQEGFVHV*
Ga0116121_112160123300009644PeatlandQKKTAQSGVRSPVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLILGIRQEGFVHV*
Ga0126305_1002133143300010036Serpentine SoilVEAYEELRRQAVEPDGREEHFEGRGVLMRRGLAGWAQLRPTAISVRPPESHSPSKPDTPALDSFGSELVRLVAGLILSTRQEGFLHA*
Ga0074045_1008013823300010341Bog Forest SoilVEAYEELRRQVVQPDGPGEHLEGRGILMRCGLAAWARLKPSTGPARGPQSHFPAASEPPLLTSHGAELVRLIAGLILSTREEGFLHA*
Ga0126370_1010367323300010358Tropical Forest SoilSSLIPEGTVVAYEGLRRQVVQPDGRGEHLEGRGVLMRCGLATWAQIRPAAVPPRAPESHFPSRAETAVLDSWGAELVRLVAGLILNTRQEGFLHA*
Ga0126376_1002891933300010359Tropical Forest SoilVVAYEGLRRQVVQPDGRGEHLEGRGVLMRCGLATWAQIRPAAVPPRAPESHFPSRAETAVLDSWGAELVRLVAGLILNTRQEGFLHA*
Ga0134125_1143589713300010371Terrestrial SoilKSPILEGTVDAYERLRRQVLQPDGRGEHLEDRGILRRCGLAAWAQRRPSAVSARSPESHFQSVSESPVLDSFGTELVRLVAGLILSIRQKGFLHA*
Ga0134128_1009261833300010373Terrestrial SoilMPDGAVEAYEALRRQSVQPDGRGEHLEGRGVLMRCGLATWAQLRCAAVSARPPQSHVSSGAEAPALDSFGVELVRLVAGLILSTRLEGFLHA*
Ga0126381_10023004913300010376Tropical Forest SoilKKTAQSGVRSRMPEGTVEAYERLRRQVVQPDGRREGMESRRILMRCGLAPWAERAPSAEPARPPESRVPSRVEAPALDSFGAELVRLVASLILSTRQEGFLHA*
Ga0134126_1118327413300010396Terrestrial SoilYEALRRRVIQQDGREQHLESCGVFRRCGLAVWAQTRPLAVPARTPESHFESASESPTLDSLGTELVRLVAGLILSIQQEGFLHA*
Ga0137393_1048809323300011271Vadose Zone SoilMPEGTVEAYEGLRRQVIQPDGRGEHQEGRGVLMRCGLATWAQIRPAAVPARPPESHFSSGAETPVLDSLGAELVRLVAGLILSTRQEGFLHA*
Ga0137365_1007486523300012201Vadose Zone SoilMPEGTVEAYEGLRRQVIQPDGRGEHQEGRGVLMRCGLATWAQIRPAVVPARPPESHFSSGAEMPVLDSLGAELVRLVAGLILSTRQEGFLHA*
Ga0137362_1025788223300012205Vadose Zone SoilVEAYEGLRRQAVQPDGRREHLEGRGVLMRSGLATWAQIGNAAVPARPPEAHFSSGSGSPVRGSFGAELVRLVAGLILSTRQEGFLHA*
Ga0137379_1093334523300012209Vadose Zone SoilIPEGTIEAYEGLRRQVVQSDGRGEHLEGRGILMRCGLAIWAQSRPAAVLARPPESQFPSGSQAPVLDSFGTELVRLVAGLILSTRQEDFPHA*
Ga0137384_1132944923300012357Vadose Zone SoilAQSDVRSPIPEGAVEAYEGLRRQAVQRDGRGEHLEGRGILMRSGLATWARIRPAAVPARPPEPHFSSGSEAPVLSSFGAELVRLVAGLILSTREEGFLHA*
Ga0137360_1043732323300012361Vadose Zone SoilMPEGTVEAYEGLRRQVVQPDGRGEHLEGRGVLMHGGLAAWAQIWPGSAPARPPQSHFSSGAEAPVLDSLGAELVRLVAGLILSTRQEGFLHA*
Ga0137361_1096253113300012362Vadose Zone SoilEGRGILMRSGLATWAQIRLETIPARSPESHRPSAETPILDSFGSELVRLVAGLILSTRRGGFPSCLN*
Ga0137390_1089623233300012363Vadose Zone SoilVEAYEGLRRQAVQPDGRGEHLGGHGVLIRCGLATWAQIRPAAVPARPPEWHFPSGAEAPVLDSFGAELVHLV
Ga0164300_1047979723300012951SoilVDAYEGLRRQAVEPDGRGEHFEGRAVLMRRGLATWAQLRPTAISVRPYESHSPSKSDPPALDSFGSELVRLLARLILSTRQASFLHA*
Ga0164299_1017939923300012958SoilVDAYEGLRRQAVEPDGRGEHFEGRAVLMRRGLATWAQLRPTAISVRPYESHSPSKSDPPALDSFGSELVRLLAGLILSTRQEGFLHA*
Ga0164302_1011036133300012961SoilVEAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRPTAISVRPPESHSPSKSDAPALDSFGSELVRLLASLILSTRQESFLHA*
Ga0164304_1029899613300012986SoilAQSSVSRIPEGAVDAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRTTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQEGFLHA*
Ga0164305_1054514723300012989SoilVEAYEGLRRQAVEPDGRGEHFEGRAVLMRRGLATWAQLRPTAISVRPYESHSPSKSDPPALDSFGSELVRLLAGLILSTRQEGFLHA*
Ga0157372_1181569113300013307Corn RhizosphereVEAYEELRRQAVEPNGREEHFEGRGVLMRRGLAMWAQLRPTAISVRPAESNSPSRSDVPALDSFGSELVRLLAGLILSIRQESFLHA*
Ga0157372_1221303613300013307Corn RhizosphereKPGALTSKKTAQSGVKSPILEGTVDAYERLRRQVLQPDGRGEHLEDRGILRRCGLAAWAQRRPSAVPARAPESHFQSVSESPVLDSFGTELVRLVAGLILSIRQKGFLHA*
Ga0120123_104074113300013770PermafrostPEGTVEAYEGLRRQIVQPDGRGEHPEGRGVLMRCGLAAWAQIRPAAQPARPPESHFPSGAEAPVLDSFGAELVRLVAGLILSTRLEGFLHA*
Ga0181530_1010615613300014159BogYEGLRRQVVQPDGGGEDLKSRRVLIRCGLAAWARIRSSALPARISEAHWQSSRETPVLDSLGAELVRLVAGLILSTRQEGFLHA*
Ga0163163_1197618313300014325Switchgrass RhizosphereAGDREQKKTAQSSVSPIPEGAVEAYEELRRQAVEPDGREDHFEGRGVLMRRGLATWAQLRTTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA*
Ga0182018_1011570923300014489PalsaMPEGTVEAYERVRRQVVQPDGRGEHLEGRGVLMRCGLATWAEIRPASVPARLSESYFPPGAEAPVLDSFGAELVRLVAGLILGIRQEGFLHA*
Ga0182010_1038640923300014490FenQKKTAQSGVRSAIPEGTVEAYEGLRRLVVQPGGGDLKSRRILMRCGLAAWARIGCSPLPARISEAHWPSPGETPVLDSLGAELVRLVAGLILSTRQEGLLHA*
Ga0182024_1227733823300014501PermafrostAYEGLRRQAVQPDGRGEHLEDRGVLMRTGLATWAQIGNAAVPARPPEAHFSSGSGTPVLGSFGAELVRLVAGLILSSRQEGFLHA*
Ga0180104_100139233300014884SoilVEAYEGLRRQVVQPDGRVEYLEGRGALMRCGLAAWAQLRPSTLLAQPPQSHFQSASESPALDSLGAELVRLVAGLILSTRQEGFLHA*
Ga0134083_1039229313300017659Grasslands SoilTVEAYEGLRRQVVQPDGRGEHLEGRGVLMRCGLATWAQSRPAAVPARPPESHFPSGPQAPVLDSFGAELVRLVAGLILSTRQEGFLHA
Ga0136617_1031700223300017789Polar Desert SandVEAYEELRRQAVEPDGREEHFEGRGVLMRRGVATWAQLRPTAISVRPSESHSPSKPDTPALDSFGSELVRLLAGLILSTRQESFVHA
Ga0187879_1002180733300017946PeatlandVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLILGIRQEGFVHV
Ga0187805_1028138423300018007Freshwater SedimentRQVIQPDGRAGHLEGRGVLVRYGLASWAQSRLAAVPARLPESHFPSGIDASVLDSIGLELVRLVASLILSARQEGFLHA
Ga0187863_1003452323300018034PeatlandMPEGTVEAYERVRRQVVQPDGRGEHLEGRGVLMRCGLATWAEIRPASVPARLSESYFPPGAEAPVLDSFGAELVRLVAGLILGIRQEGFLHA
Ga0187784_1036069713300018062Tropical PeatlandMPEGTVEAYEQLRRQVVQPDGRGGGMESRRTFMRCGLATWAQMAPSVEPARPPGLHFPSGVEALVLGSLGAELVRLMASLILSTRQEGFLHA
Ga0190265_1009507223300018422SoilVEAYEELRRQAVEPDGRDEHFEGRGVLMRRGLATWAQLRPIAISVRPPESNSPSKPDTPALDSFGSELVRLLAGLILSTRQESFVHA
Ga0190270_1259548523300018469SoilVDAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRTTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA
Ga0190274_1078090813300018476SoilQKKTAQVGLRSQIPEGTVDAYEGLRRQVVQPDGRGKHIEERGILIRRGLATWSQTRPVARTPPESPFPSGAAAPVLDWFGTELVLLVASLILSTRKEDLLHA
Ga0190271_1023997623300018481SoilVEAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRTTAISVRPPESHSPSKSDAPALDSFGSGLVRLLAGLILSTRQESFLHA
Ga0182031_109186913300019787BogAIPEEAVEAYEWLRGRVIHPDGQGEHLASLGIFVRDGLAAWAQLRPAAMSAAPPSHFPSATETAVPDGFGAELVRLVAGLILSTRQEDFLHA
Ga0193727_101359053300019886SoilVEAYEGLRGQAVQPDGRGKHLEGRGVLIRCGLATWAQIRPAAVPALPPESHFPSGAEAPVLDSFEAELVRLVAGLILSTRQEGFQRA
Ga0179594_1042870623300020170Vadose Zone SoilYEGLRRQAVQPDGRREHLEGRGVLMRSGLATWAQIGNAAVPARPPEAHFSSGSGSPVRGSFGAELVRLVAGLILSTRQEGFLHA
Ga0210405_1022832023300021171SoilMPDGTVEAYEGLRQQVVQPDGRGEGLESRRIFMRCGLAPWAQRISSAVPAGTPEAQSQPACEPPALDALAAELVRLVAGLILGIRQEGVLHA
Ga0210394_1183119613300021420SoilGVRSPIPEGTVEAYEGLRRQAVQPDGRGEYLEGRGVLMRTGLATWAQIGNAAVPARPPEAHFSSGSGAPVRGSFGAELVRLVAGLILSTRQEGFLHA
Ga0210398_1002789943300021477SoilMPAGTVEAYEGLRRQVVQPEGSGEHLGGRGVFVRCGLATWAKIRPASVPARPPESHFPLGAEAPALDSFGVELVRLVAGLILSTRQEGFLHA
Ga0210398_1073922413300021477SoilGVTSPIPEGTVEAYEGLRQQVIRPDGRGGHLEGRGVLVRYGLASWAHSRLAAVPARLPESHFPSGIDASALDSIGLELVRLVASLILSARQEGFLHA
Ga0222622_1055219513300022756Groundwater SedimentDIRSPIPEGAVAAYEGLRRQAVQPDGRREHFEGRAALMRCGLATWVQIKPTAVPACPPASPFPSVPEAPLLGSFGAELVHLIAGLILSSRQEVFLHA
Ga0207695_1036974023300025913Corn RhizosphereMPDGAVEAYEALRRQSVQPDGRGEHLEGRGVLMRCGLATWAQLRCAAVSARPPQSHVSSGAEAPALDSFGVELVRLVAGLILSARLEGFLHA
Ga0207652_1010852933300025921Corn RhizosphereGVDEQKKTAQSGVKSPILEGTVDAYERLRRQVLQPDGRGEHLQDRGILRRCGLAAWAQRRPSAVPARAPESHFQSVSESPVLDSFGAELVRLVAGLILSIRQEGFLHA
Ga0207679_1154877723300025945Corn RhizosphereVDAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRPTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA
Ga0207639_1148497113300026041Corn RhizosphereRIPEGAVEAYEELRRQAVEPNGREEHFEGRGVLMRRGLAMWAQLRPTAISVRPAESNSPSRSDVPALDSFGSELVRLLAGLILSTRQELFLHA
Ga0207641_1086491313300026088Switchgrass RhizosphereQSGVRSPMPEGTVEAYEGLRRQVVQPDGRGGHLEGRGILMRCGLATWAQNRPAVVTARPLESHFPSGPEAPVLDSFGGELVRLVAGLILSTRQEGFPHA
Ga0209378_118349623300026528SoilGTVEAYEGLRRQVVQPDGRGEHLEGRGVLMRCGLATWAQSRPAAVPARPLESHFPSGPEAPVLDSFGAELVRLVTGLILSTRQEGFPHA
Ga0209736_102317833300027660Forest SoilMPEGTVEAYEGLRRQVVQPDGRGEHLEGRGVLVRCGLATWAQIRPASVPARPPESHFPPGTEAPVLDSFGAELVRLVAGLILSTRQEGFLHA
Ga0209446_110945623300027698Bog Forest SoilVVQPDARGEHLGGRSALMRWGLATWAAIRPVAAAERPPESHVPSGAAAPVLDVFGAELVRLVAGLILSTRQEGCLRA
(restricted) Ga0233416_1002213133300027799SedimentVEAYEGLRRQVVQLDGRVEHLEGRGILRRRGLAAWAQLRPAIVPASPPESQLQPESESLALTSFGAELVRVVAGLILSTRQERLLHA
Ga0209488_1001143363300027903Vadose Zone SoilVEAYEGLRRQAVQPDGRREHLEGRGVLMRSGLATWAQIGNAAVPARPPEAHFSSGSGSPVRGSFGAELVRLVAGLILSTRQEGFLHA
Ga0209698_1003673723300027911WatershedsMPEGTVEAYEGLRRQVVQPDGGREGLESRRILMRRGLAPWAEIISAAVPARTPESHLQSACESPVLDSLGVELVRLVAGLILGIRQEGFVHA
Ga0247823_1029796923300028590SoilVEAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRPTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA
Ga0247822_1186343713300028592SoilGLRRQAVEPDGRGEHFEGRAVLMRRGLATWAQLRPTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA
Ga0302221_1019733023300028806PalsaVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLILGIRQ
Ga0247827_1073173513300028889SoilSSVSRIPEGAVEAYEGLRRQAVEPDGRGEHFEGRGVLMRRGLATWAQLRPTAISVRPPESHSPSKSDAPALDSFGSELVRLLAGLILSTRQESFLHA
Ga0308309_1026450523300028906SoilSDVASPIPEGTVEAYEGLRGQVIQPDGRGGHLEGRGVLVRYGLASWAHSRLAAVPARLPESHFPSGIDASALDSIGLELVRLVASLILSARQEGFLHA
Ga0311368_1024077513300029882PalsaVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLILGIRQEGFV
Ga0311350_1182073723300030002FenVGEQKKTAQSGVIRLIPEGTVDAYEGLRRQVVQPDGRGRHIAERGVLIRRGFATWSQTRPVARTPPESPFPSRAATPVLDSFGTELVLLVASLILSTRKEDLLHA
Ga0302181_1027575223300030056PalsaVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLIL
Ga0311370_1026864413300030503PalsaVPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVR
Ga0170824_11668930923300031231Forest SoilMDAYEGLRRQVVQPDGRGRHIEERGVLIRRGFASWSQTRPVARTPPESPFSSGAATPVLDSFGTELVLLVASLILSTRKEDFLHA
Ga0265316_1038750313300031344RhizosphereAGPSEQKKTAQSGVRSPVPEGTVEAYEGLRRQVVQPDGRGEGLESRRALMRCGLAPWAQTISSAVPARSPESTLQSACESPVLLDSLGAELVRLIAGLILGIRQEGFVHV
Ga0170818_10441410833300031474Forest SoilMDAYEGLRRQVVQPDGRGKHIEERGILIRRGLATWSQIRPVAITPPESPFPSGAAAPVLDSFGTELVLLVASLILSTRKEDLLHA
Ga0302326_1000834943300031525PalsaVDAYEGLRRQVVQPDGRGKHIEERGVLIRRGLATWSQTRPVAGAPSESPFPSGAAAPVLDSFGTELVLLV
Ga0318516_1003248443300031543SoilVEAYEQLRRQVVRPDGRGGGMESRRVFMRCGLAPWAQMAPSVEPARPPEPHFPSGLEVPVLDSLGAELVRLIASLILSTRQEGCLHA
Ga0310686_11167926713300031708SoilAGVGGQKKTAQSDVRSPMPEGTVEAYEGLRRQVVQPDGRGEHPEGRGVLIRCGLATWAQIRPAAVLARPHESHFQSGAEAPVLDSFGAELVRLVAGLILGIRQEGFLHA
Ga0318550_1051552023300031797SoilPIPEGTVVAYEGLRRQVVQPDGRGEYLESRGVLMRCGLATWAQIRPATVPARAPESHFPSRAETAVLDSLGAELIRLVAGLILNTRQEGFLHA
Ga0318568_1092774323300031819SoilIPEGTVVAYEGLRRQVVQPDGRGEYLESRGVLMRCGLATWAQIRPATVPARAPESHFPSRAETAVLDSLGAELIRLVAGLILNTRQEGFLHA
Ga0308174_1003252523300031939SoilVDAYEGLRRQVVQPDGRGKHIEERGVLIRRGLATWSQTRPVASTPPESPFPSGAAAPALDSFGTELVLLIASLILSTRKEDLLHA
Ga0310916_1157747323300031942SoilTGAGEQKKTAQSDVGSPIPEGTVVAYEGLRRQVVQPDGRGEYLESRGVLMRCGLATWAQIRPATVPARAPESHFPSRAETAVLDSLGAELIRLVAGLILNTRQEGFLHA
Ga0326597_1200453213300031965SoilGSVEAYEGLRQQVVEPDRRGEHPEGRGLLMRCGLAAWAQIRPTAVPQRPPELNFPSGAQTPVLESFGAELVRLVAGLILSTRQEGFLHA
Ga0310906_1097963113300032013SoilVEAYEGLRRQAVEPDGRGEHFKGRGVLMRCGLATWAQLRPTAITVRPSESHSPSKSDAPALDSFGSELVRLLAGLILSTRQEGFLHA
Ga0306920_10256605123300032261SoilKTAQSDVGSPIPEGTVVAYEGLRRQVVQPDGRGEYLESRGVLMRCGLATWAQIRPATVPARAPESHFPSRAETAVLDSLGAELIRLVAGLILNTRQEGFLHA
Ga0306920_10347494723300032261SoilSLMPEGTVEAYEGLRRQVVQPDGQGEHLDGRGVLMRCGLATWAQGRPAAVSAPPPESHFPSGPEAPVLDSFGAELVRLVAGLILSTRQEGFLHA
Ga0335077_1139208613300033158SoilTSPIPEGTVEAYEGLRRQVIQPDGRGGHLEGRGVLVRYGLASWAQSRLAAVPARLPESHFPSRIDASVLDSIGLELVRLVANLILSTRQEGFSACLN
Ga0214472_10006216203300033407SoilVVEPDRRGEHPEGRGLLMRCGLAAWAQIRPTAVPQRPPESNFPSGAQTPVLESFGAELVRLVAGLILSTRQEGFLHA
Ga0334854_004250_2084_23653300033829SoilMPEGTVEAYEGLRRQVVQPDGRGEGLESRRVLMRCGLAPWAQMISSAVPARTPESPLQPACESPVLLDSLGAELVRLVAGLILGIRQEGFVHV
Ga0364929_0314539_2_3193300034149SedimentEEKKTAPAGIGSPLAEGSVQAYEGLRQQVVQPDRRGEHPEGRGLLMRCGLAAWAQIRPMAVPSCPPQSDFPSAAQTSVLDCFGAELVRLLAGLILSTRQEGFLHA
Ga0364932_0177490_358_6183300034177SedimentMTQPDRRGEHPEGRGLLMRCGLAAWAQIRPMAVPLRPPESKFPSGAQTPVIESFGAELVRLIAGLILSTRQEGFLYAGAENYPATS
Ga0364943_0137985_549_8723300034354SedimentLGDQKKTTQAGVKSPLPQGTVEAYEGLRREVVQVDRRGEHPEGRGILMRCGLATWAQIRPRVVASSSPPSHSLSGAPTSLLDIIGTELVRLLAGLILSTRREGFQHG

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.