Metagenome / Metatranscriptome Family F092487

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092487
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	MSKVVTVGATALFACILCATPLSLRLSPEGKVTLSVDSASAE
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.551 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (24.299 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.991 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 24.29% β-sheet: 14.29% Coil/Unstructured: 61.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01557	FAA_hydrolase	10.28
PF13787	HXXEE	5.61
PF00839	Cys_rich_FGFR	4.67
PF00196	GerE	3.74
PF07784	DUF1622	2.80
PF07883	Cupin_2	2.80
PF03401	TctC	1.87
PF07813	LTXXQ	1.87
PF00119	ATP-synt_A	1.87
PF00106	adh_short	0.93
PF04392	ABC_sub_bind	0.93
PF01979	Amidohydro_1	0.93
PF04226	Transgly_assoc	0.93
PF00230	MIP	0.93
PF00528	BPD_transp_1	0.93
PF01381	HTH_3	0.93
PF01594	AI-2E_transport	0.93
PF12849	PBP_like_2	0.93
PF14534	DUF4440	0.93
PF00484	Pro_CA	0.93
PF07244	POTRA	0.93
PF02353	CMAS	0.93
PF08734	GYD	0.93
PF00361	Proton_antipo_M	0.93
PF13442	Cytochrome_CBB3	0.93
PF13557	Phenol_MetA_deg	0.93
PF00884	Sulfatase	0.93
PF00346	Complex1_49kDa	0.93
PF03952	Enolase_N	0.93
PF09955	DUF2189	0.93
PF13185	GAF_2	0.93
PF12244	DUF3606	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	7.48
COG4828	Uncharacterized membrane protein	Function unknown [S]	2.80
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	1.87
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.87
COG0148	Enolase	Carbohydrate transport and metabolism [G]	0.93
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.93
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.93
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.93
COG0649	NADH:ubiquinone oxidoreductase 49 kD subunit (chain D)	Energy production and conversion [C]	0.93
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.93
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.93
COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	Lipid transport and metabolism [I]	0.93
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3261	Ni,Fe-hydrogenase III large subunit	Energy production and conversion [C]	0.93
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.38 %
Unclassified	root	N/A	36.45 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.80 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.30 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.80 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.87 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.87 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.93 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20.56 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	2.80 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	14.02 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.80 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.93 %
unclassified Spartobacteria	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria	0.93 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.21 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.87 %
Azorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium	0.93 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.93 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.21 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.87 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.93 %
unclassified Azorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium	0.93 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	11.21 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2.80 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.87 %
Azorhizobium sp. 35-67-5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 35-67-5	0.93 %
Rhizobium aegyptiacum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aegyptiacum	0.93 %
Spartobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Chlamydiae	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2209111006\|2214746118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Azorhizobium → unclassified Azorhizobium → Azorhizobium sp. 35-67-5	501	Open in IMG/M
3300000156\|NODE_c0606719	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1675	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100266289	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	528	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1049359	Not Available	648	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10000092	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	14495	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10037784	Not Available	1113	Open in IMG/M
3300001977\|JGI24746J21847_1000023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14867	Open in IMG/M
3300001978\|JGI24747J21853_1001981	Not Available	1608	Open in IMG/M
3300004463\|Ga0063356_102574479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	781	Open in IMG/M
3300005295\|Ga0065707_10161155	All Organisms → cellular organisms → Bacteria → Proteobacteria	1562	Open in IMG/M
3300005332\|Ga0066388_105153506	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	663	Open in IMG/M
3300005345\|Ga0070692_10666728	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300005363\|Ga0008090_15860627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	707	Open in IMG/M
3300005434\|Ga0070709_10079417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2137	Open in IMG/M
3300005435\|Ga0070714_100600522	All Organisms → cellular organisms → Bacteria	1057	Open in IMG/M
3300005455\|Ga0070663_101444593	Not Available	610	Open in IMG/M
3300005530\|Ga0070679_100215581	All Organisms → cellular organisms → Bacteria	1882	Open in IMG/M
3300005535\|Ga0070684_100177189	All Organisms → cellular organisms → Bacteria	1938	Open in IMG/M
3300005543\|Ga0070672_102039961	Not Available	517	Open in IMG/M
3300005546\|Ga0070696_100241831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1362	Open in IMG/M
3300005617\|Ga0068859_100305366	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300005713\|Ga0066905_100008570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4673	Open in IMG/M
3300005713\|Ga0066905_100337212	Not Available	1199	Open in IMG/M
3300005713\|Ga0066905_100509353	Not Available	1002	Open in IMG/M
3300005713\|Ga0066905_100823558	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	807	Open in IMG/M
3300005713\|Ga0066905_101035798	Not Available	725	Open in IMG/M
3300005764\|Ga0066903_101247186	Not Available	1384	Open in IMG/M
3300005764\|Ga0066903_103597006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	835	Open in IMG/M
3300005764\|Ga0066903_106357608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	616	Open in IMG/M
3300006048\|Ga0075363_100922923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	535	Open in IMG/M
3300006175\|Ga0070712_100566122	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300006196\|Ga0075422_10037227	All Organisms → cellular organisms → Bacteria	1720	Open in IMG/M
3300006237\|Ga0097621_100153662	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300006852\|Ga0075433_10722956	Not Available	872	Open in IMG/M
3300006914\|Ga0075436_100670907	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300006914\|Ga0075436_101157552	Not Available	583	Open in IMG/M
3300009098\|Ga0105245_10190616	All Organisms → cellular organisms → Bacteria	1963	Open in IMG/M
3300009101\|Ga0105247_10126126	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300009148\|Ga0105243_10398449	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300010362\|Ga0126377_11318648	Not Available	794	Open in IMG/M
3300010366\|Ga0126379_10067624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium aegyptiacum	3031	Open in IMG/M
3300010373\|Ga0134128_10407615	Not Available	1518	Open in IMG/M
3300010396\|Ga0134126_11564220	Not Available	726	Open in IMG/M
3300010397\|Ga0134124_10880491	Not Available	900	Open in IMG/M
3300010399\|Ga0134127_12310545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	617	Open in IMG/M
3300012948\|Ga0126375_11254050	Not Available	620	Open in IMG/M
3300012961\|Ga0164302_10828511	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300012971\|Ga0126369_10866207	Not Available	988	Open in IMG/M
3300012971\|Ga0126369_11168024	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300013100\|Ga0157373_10829645	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300015373\|Ga0132257_102631911	Not Available	655	Open in IMG/M
3300016341\|Ga0182035_11555523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	596	Open in IMG/M
3300016422\|Ga0182039_10141379	Not Available	1849	Open in IMG/M
3300016445\|Ga0182038_10006070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6583	Open in IMG/M
3300016445\|Ga0182038_11725605	Not Available	564	Open in IMG/M
3300017792\|Ga0163161_11412959	Not Available	608	Open in IMG/M
3300020078\|Ga0206352_10898743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	706	Open in IMG/M
3300021560\|Ga0126371_12181487	Not Available	668	Open in IMG/M
3300022889\|Ga0247785_1001150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2393	Open in IMG/M
3300022901\|Ga0247788_1000256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6823	Open in IMG/M
3300025905\|Ga0207685_10062441	Not Available	1480	Open in IMG/M
3300025917\|Ga0207660_10317522	Not Available	1243	Open in IMG/M
3300025917\|Ga0207660_10402417	Not Available	1103	Open in IMG/M
3300025920\|Ga0207649_10262962	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300025921\|Ga0207652_10403883	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300025921\|Ga0207652_11319114	All Organisms → cellular organisms → Bacteria → PVC group → Chlamydiae	624	Open in IMG/M
3300025924\|Ga0207694_11189019	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300025927\|Ga0207687_10629475	Not Available	906	Open in IMG/M
3300025928\|Ga0207700_10786636	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300025933\|Ga0207706_10124741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2265	Open in IMG/M
3300025934\|Ga0207686_10817161	Not Available	748	Open in IMG/M
3300025945\|Ga0207679_11385517	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300026035\|Ga0207703_10456951	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300026067\|Ga0207678_10358898	All Organisms → cellular organisms → Bacteria → Proteobacteria	1257	Open in IMG/M
3300026067\|Ga0207678_10473114	Not Available	1091	Open in IMG/M
3300026779\|Ga0207471_102226	Not Available	688	Open in IMG/M
3300027035\|Ga0207776_1012204	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → unclassified Spartobacteria → Spartobacteria bacterium	1240	Open in IMG/M
3300027063\|Ga0207762_1034059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	769	Open in IMG/M
3300027433\|Ga0207618_101987	Not Available	524	Open in IMG/M
3300027873\|Ga0209814_10049640	All Organisms → cellular organisms → Bacteria	1751	Open in IMG/M
3300027874\|Ga0209465_10318602	Not Available	779	Open in IMG/M
3300027915\|Ga0209069_10245083	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300028379\|Ga0268266_11327439	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300028379\|Ga0268266_11535554	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300031545\|Ga0318541_10274908	All Organisms → cellular organisms → Bacteria → Proteobacteria	938	Open in IMG/M
3300031679\|Ga0318561_10107115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1474	Open in IMG/M
3300031740\|Ga0307468_100768344	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300031795\|Ga0318557_10545468	Not Available	532	Open in IMG/M
3300031897\|Ga0318520_10893796	Not Available	559	Open in IMG/M
3300031897\|Ga0318520_11108636	Not Available	502	Open in IMG/M
3300031912\|Ga0306921_12657712	Not Available	516	Open in IMG/M
3300031941\|Ga0310912_10104126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2096	Open in IMG/M
3300031947\|Ga0310909_10228523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1551	Open in IMG/M
3300032001\|Ga0306922_10333486	Not Available	1628	Open in IMG/M
3300032017\|Ga0310899_10006978	All Organisms → cellular organisms → Bacteria → Proteobacteria	3208	Open in IMG/M
3300032017\|Ga0310899_10108513	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300032060\|Ga0318505_10195520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	946	Open in IMG/M
3300032094\|Ga0318540_10021379	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2702	Open in IMG/M
3300032179\|Ga0310889_10383246	All Organisms → cellular organisms → Bacteria → Proteobacteria	695	Open in IMG/M
3300032180\|Ga0307471_100672394	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300032205\|Ga0307472_100271228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1345	Open in IMG/M
3300032261\|Ga0306920_100030764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7655	Open in IMG/M
3300032828\|Ga0335080_10218459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2091	Open in IMG/M
3300033289\|Ga0310914_10351315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1333	Open in IMG/M
3300033433\|Ga0326726_10930037	Not Available	844	Open in IMG/M
3300034817\|Ga0373948_0029568	Not Available	1097	Open in IMG/M
3300034820\|Ga0373959_0037248	Not Available	1007	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	68.22%
Host-Associated	Host-Associated	30.84%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.29%
Plants	Host-Associated → Plants	30.84%
Aquatic	Environmental → Aquatic	0.93%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Roots	Host-Associated → Plants → Roots	1.87%
Sediment	Environmental → Aquatic → Sediment	0.93%
Peat	Environmental → Terrestrial → Peat	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.06%
Loam	Environmental → Terrestrial → Soil → Loam	23.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.15%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.74%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2209111006	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001977	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5	Host-Associated	Open in IMG/M
3300001978	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026779	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A2w-11 (SPAdes)	Environmental	Open in IMG/M
3300027035	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 30 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027433	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A3w-11 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2213756254	2209111006	Arabidopsis Rhizosphere	MSKAVTVGAAALLGCILCATPLSLHVSPEGRVSLS
NODE_06067191	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MSKVVTVGATTLFACILCATPLSVRFSPEGTVSLSVDSAA
INPhiseqgaiiFebDRAFT_1002662892	3300000364	Soil	VSKAVIVGAAALFGCILCAMPLSLRHSPEGKVSLS
AF_2010_repII_A01DRAFT_10493591	3300000580	Forest Soil	MSKAVTAGATALLGCILFATPVTLRLSPEGKVSLSMESVSAGEAGINRRAY
AF_2010_repII_A001DRAFT_100000921	3300000793	Forest Soil	MSKTVTLGTTALFACILCATPLSLRLLPDGKMSLSVDSASAVIGRPLTPMSV
AF_2010_repII_A001DRAFT_100377841	3300000793	Forest Soil	MSKAVTAGATALLGCILFATPVTLRLSPEGKVSLSMESAPAG
JGI24746J21847_100002316	3300001977	Corn, Switchgrass And Miscanthus Rhizosphere	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVGRPLTATSVA
JGI24747J21853_10019811	3300001978	Corn, Switchgrass And Miscanthus Rhizosphere	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHN
Ga0063356_1025744791	3300004463	Arabidopsis Thaliana Rhizosphere	MLKAAAVGATALGACILCVAPLSLRLSPEGSVSLFVDSAAAEIG
Ga0065707_101611551	3300005295	Switchgrass Rhizosphere	MSKLVTTGVTALFVCILCTTPLSLRFSPEGNVSLSEDNASAVIGRPLTPMSVA
Ga0066388_1051535061	3300005332	Tropical Forest Soil	MSKAVTVGAIVLLGCILCATPLSLRHSPEGKVSLSMDSASAE
Ga0070692_106667281	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSKAVTVCAAALLGCILCATPLSLHVSPEGVSLSTDSASAD
Ga0008090_158606271	3300005363	Tropical Rainforest Soil	MSKAATVGTTALFACVLCATPLSLRLSPEGNLLLSTDTASAEIGRPLTP
Ga0070709_100794171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSKIVAVGATAVFACILCATPLSLRLSPQGNLALSSDSASAEIGR
Ga0070714_1006005223	3300005435	Agricultural Soil	MSKVATVGATALFACILCATPLSVSLSPEGNVALSVDSASAVIGRPLTP
Ga0070663_1014445931	3300005455	Corn Rhizosphere	MTKVTIGATAVFACILCATPLSVRFSPEGKVLLSADSANAVVYCQYV
Ga0070679_1002155811	3300005530	Corn Rhizosphere	MTKITVGATVIFAGILCATPLSVRFAPDGKVLLSADSANAVVYC
Ga0070684_1001771891	3300005535	Corn Rhizosphere	MSKLVTTGATALFVCILCATPLSLRLSPEGNVSVSEDTAS
Ga0070672_1020399611	3300005543	Miscanthus Rhizosphere	LEVVMSKLVTTGATALFVCILCATPLSLRLSPEGNVS
Ga0070696_1002418311	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MLKAAAVGATALGACILCVAPLSLRLSPEGSVSLFVDSAA
Ga0068859_1003053664	3300005617	Switchgrass Rhizosphere	MSKLVTTGATALFACILCATPLSLRLSPEGNVSVSEDTA
Ga0066905_1000085708	3300005713	Tropical Forest Soil	MSKVVIVGATALFACVLCAMPLSLRFSPEGNVSLSVDSAAAVI
Ga0066905_1003372121	3300005713	Tropical Forest Soil	MSKAVTAGAITLLGCILCATPVTLRLSPEGKVSLSIESASAVDAGVNRRA
Ga0066905_1005093531	3300005713	Tropical Forest Soil	MSKAVTAGATALLGCILCATPVTLRLSPEGKVSLSIESASAVDAGVNRRA
Ga0066905_1008235582	3300005713	Tropical Forest Soil	MSKAITAGATALFACVLCATPLSLRLLPDGKMSLSVDSASAVIGRPLTPMSVA
Ga0066905_1010357982	3300005713	Tropical Forest Soil	MSKAVTAGATALLGCILCATPVTLGLSPEGKVLLSI
Ga0066903_1012471861	3300005764	Tropical Forest Soil	MSKVVKVGATALFACILCASPLSLRLSPEGIVALSVDSASAVIGRPLTP
Ga0066903_1035970061	3300005764	Tropical Forest Soil	MSKVLTVGATALFACTLCATPLSLRLSPEGNLSLSVDSASAVIGRPLTP
Ga0066903_1063576083	3300005764	Tropical Forest Soil	MSKAVTVGATALLGCILCATPLSLRLSPEGKVSLF
Ga0075363_1009229232	3300006048	Populus Endosphere	MLKAAAVGATALGACILCVAPLSLRLSPEGSVSLFVDSAAAEIGRPLTAGSV
Ga0070712_1005661221	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVVTVGATALFACFLCATPLSVRLLPEGIAALS
Ga0075422_100372274	3300006196	Populus Rhizosphere	MSKVVTVGATAVFACILCATPLSLRLSPEGNVALSMDSASARI
Ga0097621_1001536621	3300006237	Miscanthus Rhizosphere	MLKPVTVGATAFLGRILCATPVTLRLSPEGKISMSMESTSAVEAGV
Ga0075433_107229562	3300006852	Populus Rhizosphere	MSKVVTVGATAVFACILCATPLSLRLSPEGNVALSMD
Ga0075436_1006709071	3300006914	Populus Rhizosphere	MSKAVTAGATALLGCILCATPVTLRLSPEGKVSLSMESASAVDAG
Ga0075436_1011575521	3300006914	Populus Rhizosphere	MSKLVTVGATALFACVLCATPYSLRFSPDGKMSLSTDTASAVIG
Ga0105245_101906165	3300009098	Miscanthus Rhizosphere	MSKVVTVGATALFACILCATPLALRLSPEGNVVLSVDSASAVIGR
Ga0105247_101261261	3300009101	Switchgrass Rhizosphere	MSKLVRTGATALFVCILCATPLSLRLASEGNVSVSEDTAS
Ga0105243_103984493	3300009148	Miscanthus Rhizosphere	MSKLVTTGATALFACILCATPLSLRLSPEGNVSVSEDTAS
Ga0126377_113186482	3300010362	Tropical Forest Soil	MSKAITAGATALFACVLCATPLSLRLLPDGKMSLSTDTASAVIGR
Ga0126379_100676242	3300010366	Tropical Forest Soil	MSKAVTVGATAFLACVLWGTPLSLRLSPEGKVSLSMDGAQRRPRE*
Ga0134128_104076152	3300010373	Terrestrial Soil	MSKVITVGATVLFAGILCATPLSVRLSPQGTVALFADGASAEIG
Ga0134126_115642201	3300010396	Terrestrial Soil	MSKLVTTGATALFACILCATPLSLRLSPEGNVSVSEDTASAVIGRP
Ga0134124_108804911	3300010397	Terrestrial Soil	MSKLVTTGATALFVCILCATPLSLRLSPEGNVSVSEDT
Ga0134127_123105452	3300010399	Terrestrial Soil	MLKAAAVGATALGACILCVAPLSLRLSPEGSVSLFVDSA
Ga0126375_112540502	3300012948	Tropical Forest Soil	MSKAVTAGATALLGCILCATPVTLRLSPEGKVSLFMESASAVDAGVNRRT
Ga0164302_108285111	3300012961	Soil	MSKLVTTGVTALFVCILCTTPLSLRFSPEGNVSLSEDTASAVI
Ga0126369_108662072	3300012971	Tropical Forest Soil	MSKLVTVGASALFACILCATPFSLRFSPEGNVSLSTD
Ga0126369_111680242	3300012971	Tropical Forest Soil	MSKVVTVGATALFACILCATPLSFRVSPLGHVALSVD
Ga0157373_108296452	3300013100	Corn Rhizosphere	MSKLVTTGATALFVCILCAIPLSLRLSPEGNVSVSEDTASAVIGRPLTP
Ga0132257_1026319111	3300015373	Arabidopsis Rhizosphere	MSKVVTVGATVVFACILCATPLSLRLSGGAMALSEDNASAE
Ga0182035_115555231	3300016341	Soil	MSKAVTVGTTALFACVLFATPLSLRLSPEGNLLPSTDTA
Ga0182039_101413791	3300016422	Soil	MSKAVTAGATALLGCILFATPVTLRLSPEGKVSPSMESASADAGLN
Ga0182038_100060708	3300016445	Soil	MSKAVSVGATAFLACVLWATPLSLRLSPEGKVSLS
Ga0182038_117256052	3300016445	Soil	MPKLMTVGATALFACVLCATPLSLRLLPDGKMSLSTDTASAVIGRPL
Ga0163161_114129591	3300017792	Switchgrass Rhizosphere	MSKLVTTGATALFVCILCATPLSLRLSPEGNVSVSEDTASAV
Ga0206352_108987432	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MLKAAAVGATALGACILCVAPLSLRLSPEGSVSLFVDSAAAEIGRPLTAG
Ga0126371_121814871	3300021560	Tropical Forest Soil	MSKAVTAGATALLGCILFATPVTLRLSPEGKVSLSMESASAGDAG
Ga0247785_10011506	3300022889	Soil	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVGRPLTAASVA
Ga0247788_10002561	3300022901	Soil	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVGRPLTATSV
Ga0207685_100624411	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVATVGATALFACILCATPLSVSLSPEGNVALSVDTASAVIGRP
Ga0207660_103175221	3300025917	Corn Rhizosphere	MTKVTIGATAVFACILCATPLSVRFSPEGKVLLSADSANAVVYCQYVG
Ga0207660_104024173	3300025917	Corn Rhizosphere	MSKVATVGATALFACILCATPLSVSLSPEGNVALSVDTASAVIGRPLT
Ga0207649_102629624	3300025920	Corn Rhizosphere	MSKAVTVGAAALLGCILCATPLSLHVSSEGVSLSADSASADG
Ga0207652_104038831	3300025921	Corn Rhizosphere	MSKVVTVGATALFACIVCATPLSVRLLPAGIAALSVDSASAEIG
Ga0207652_113191141	3300025921	Corn Rhizosphere	MSKASVAATAVLACILCATPLSVRFAPEGKVLLSADSAN
Ga0207694_111890191	3300025924	Corn Rhizosphere	MSKAVTVGAAALLGCILCATPLSLHVSSEGVSLSA
Ga0207687_106294752	3300025927	Miscanthus Rhizosphere	MSKVVTVGATALFACILCATPLSLRLSPEGKVTLSVDSASAE
Ga0207700_107866363	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MSKVVTVGVTGFFACILCATPLSLRLSPEGNVALSVD
Ga0207706_101247411	3300025933	Corn Rhizosphere	MSKAVTVGAAALLGCILCATPLSLHVSPEGRVSLSTDSASAD
Ga0207686_108171611	3300025934	Miscanthus Rhizosphere	MSKLVTTGATALFACILCATPLSLRLSPEGNVSVSEDT
Ga0207679_113855172	3300025945	Corn Rhizosphere	MSKAVTVGAAALLGCILCATPLSLHVSPEGVSLST
Ga0207703_104569513	3300026035	Switchgrass Rhizosphere	MSKVVTVGATALFACILCATPLSLRLSPEGNVVLSVDS
Ga0207678_103588981	3300026067	Corn Rhizosphere	MSKVVTVGATALFACILCATPLSLRLSPEGKVTLSVDSASAEIG
Ga0207678_104731142	3300026067	Corn Rhizosphere	MSKLVTTGATALFVCILCATPLSLRLSPEGNVSVSEDTASAVI
Ga0207471_1022261	3300026779	Soil	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVG
Ga0207776_10122041	3300027035	Tropical Forest Soil	MSKIVTVGATALFACVLCATPLSLRLLPDGNVSLSVDSASAEIGRP
Ga0207762_10340592	3300027063	Tropical Forest Soil	MSKIVTAGATALFACVLCATPLSLRLSPQGNLSLSVDSASAEVGRPL
Ga0207618_1019871	3300027433	Soil	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTH
Ga0209814_100496401	3300027873	Populus Rhizosphere	MSKVVTVGATAVFACILCATPLSLRLSPEGNVALSMDSASARIGR
Ga0209465_103186022	3300027874	Tropical Forest Soil	MSKTVTLGTTALFACILCATPLSLRLLPEGKVSLSADTA
Ga0209069_102450832	3300027915	Watersheds	MSKVVTVGATALFACILCATPLSLRLLPEGNVALSVDSASAVIG
Ga0268266_113274391	3300028379	Switchgrass Rhizosphere	MSKIVAVGATAVFACILCATPLSLRLSPHGNVALSS
Ga0268266_115355541	3300028379	Switchgrass Rhizosphere	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVGRPLTAAS
Ga0318541_102749081	3300031545	Soil	MSKAVTVGTTALFACVLFATPLSLRLSPEGNLLPSTDTASAEIG
Ga0318561_101071154	3300031679	Soil	MSKAVSVGATAFLACVLWATPLSLRLSPEGKVSLSMDRASAQT
Ga0307468_1007683442	3300031740	Hardwood Forest Soil	MSKAVTVGAAALLGCILCATPLSLHVSPEGVSLSTDSASADGV
Ga0318557_105454681	3300031795	Soil	MSKLVTVGATALFACILCTTPYSVRFSPEGNLSLSTDTAS
Ga0318520_108937961	3300031897	Soil	MSKLVTTGATALFACILFATPFSLRFSPEGNVSLSTDTASAVIGRPLTPMS
Ga0318520_111086361	3300031897	Soil	MSKLVTVGTTALFACILSAAPLSFHLSRSSNVTLST
Ga0306921_126577121	3300031912	Soil	MSKVITVGATAVFACVLCATPLSLRFSPEGNVALSGDSASARIGHPLTAT
Ga0310912_101041265	3300031941	Soil	MSKLVTVGTTALFACILSATPLSVHLSRSGNVTLSTDTASAVI
Ga0310909_102285233	3300031947	Soil	MSKAVSVGATAFLACVLWATPLSLRLSPEGKVSLSM
Ga0306922_103334865	3300032001	Soil	MSKAVTAGATALLGCILFATPVTLRLSPEGKVSLSMESV
Ga0310899_100069785	3300032017	Soil	MSKLVTTGATALFVCILCATPLSLRLSSEGNVSVSEDTASAVIGR
Ga0310899_101085131	3300032017	Soil	MSKMLTVGATALFAGILCATPFSVRLSPQGTVTLSADGASAEIGRPLTAGSV
Ga0318505_101955203	3300032060	Soil	MSKAVSVGATAFLACVLWATPLSLRLSPEGKVSLSMD
Ga0318540_100213794	3300032094	Soil	MSKAVTAGATALLGCILFATPVTLRLSPEGKVSPSM
Ga0310889_103832461	3300032179	Soil	MSKIVAVGATAVFACILCATPLSLRLSPQGNVALST
Ga0307471_1006723941	3300032180	Hardwood Forest Soil	MSKAVTVGAAALLGCILCSTPLSLHVSSEGVSLSADSASADG
Ga0307472_1002712283	3300032205	Hardwood Forest Soil	MSKVSAVGATAVFACILCATPASLRLSPEGNVSLTQNSASAEVGRQLTAT
Ga0306920_1000307641	3300032261	Soil	MSKAVSVGATAFLACVLWATPLSLRLSPEGKVSLSLDRASAQ
Ga0335080_102184591	3300032828	Soil	MSKVVTVGATALCACILCATPLSLRVSPLGHVALSVDSASA
Ga0310914_103513154	3300033289	Soil	MSKLVTVGTTALFACILSAAPLSFHLSRSGNVTLSTDTASAVIGRPLTPM
Ga0326726_109300371	3300033433	Peat Soil	MSKVVTVGATSLFACILCATPLSLRLLPEGNVALSVDSASAVI
Ga0373948_0029568_950_1096	3300034817	Rhizosphere Soil	MSKSVTVGTTAFFACILCATPVSLGVSPQGNVSLTHNSASAEVGRPLTA
Ga0373959_0037248_853_1005	3300034820	Rhizosphere Soil	MSKLVTTGATALFVCILCATPLSLRLSSEGNVSVSEDTASAVIGRPLTPMS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092487

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences