Metagenome Family F092488

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092488
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	82 residues
Representative Sequence	MKRLALAALAALLLTTAPLAQDKSAGADEIQIKQLERAWNQAEARQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKW
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.23 %
% of genes near scaffold ends (potentially truncated)	91.59 %
% of genes from short scaffolds (< 2000 bps)	91.59 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (64.486 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.299 % of family members)
Environment Ontology (ENVO)	Unclassified (33.645 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.421 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.48% β-sheet: 3.81% Coil/Unstructured: 45.71%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04055	Radical_SAM	12.15
PF00383	dCMP_cyt_deam_1	5.61
PF06831	H2TH	5.61
PF06827	zf-FPG_IleRS	3.74
PF04264	YceI	2.80
PF01872	RibD_C	2.80
PF00441	Acyl-CoA_dh_1	2.80
PF08494	DEAD_assoc	1.87
PF13620	CarboxypepD_reg	1.87
PF14534	DUF4440	1.87
PF01058	Oxidored_q6	1.87
PF00912	Transgly	0.93
PF06224	HTH_42	0.93
PF02771	Acyl-CoA_dh_N	0.93
PF02371	Transposase_20	0.93
PF13360	PQQ_2	0.93
PF00005	ABC_tran	0.93
PF01850	PIN	0.93
PF13304	AAA_21	0.93
PF04366	Ysc84	0.93
PF04237	YjbR	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0266	Formamidopyrimidine-DNA glycosylase	Replication, recombination and repair [L]	5.61
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	3.74
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.80
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.80
COG2353	Polyisoprenoid-binding periplasmic protein YceI	General function prediction only [R]	2.80
COG0377	NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase	Energy production and conversion [C]	1.87
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	1.87
COG1740	Ni,Fe-hydrogenase I small subunit	Energy production and conversion [C]	1.87
COG1941	Coenzyme F420-reducing hydrogenase, gamma subunit	Energy production and conversion [C]	1.87
COG3260	Ni,Fe-hydrogenase III small subunit	Energy production and conversion [C]	1.87
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2315	Predicted DNA-binding protein with Ã¢â‚¬Ëœdouble-wingÃ¢â‚¬â„¢ structural motif, MmcQ/YjbR family	Transcription [K]	0.93
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.93
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.93
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.49 %
Unclassified	root	N/A	35.51 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	42.06 %
Unclassified	root	N/A	35.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.74 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.87 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	0.93 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.93 %
Nevskia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	35.51 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.67 %
Nevskia soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	0.93 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_12455572	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1004	Open in IMG/M
3300001593\|JGI12635J15846_10004442	All Organisms → cellular organisms → Bacteria	12108	Open in IMG/M
3300002245\|JGIcombinedJ26739_100937432	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300004082\|Ga0062384_100118489	Not Available	1449	Open in IMG/M
3300004633\|Ga0066395_10259407	Not Available	935	Open in IMG/M
3300005175\|Ga0066673_10684230	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300005330\|Ga0070690_101421861	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300005332\|Ga0066388_105685210	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300005434\|Ga0070709_11508528	Not Available	546	Open in IMG/M
3300005435\|Ga0070714_100674405	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300005454\|Ga0066687_10949444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	513	Open in IMG/M
3300005533\|Ga0070734_10056398	All Organisms → cellular organisms → Bacteria	2365	Open in IMG/M
3300005538\|Ga0070731_10301191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1064	Open in IMG/M
3300005541\|Ga0070733_10650800	All Organisms → cellular organisms → Bacteria → Acidobacteria	707	Open in IMG/M
3300005542\|Ga0070732_10677565	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300005555\|Ga0066692_10971454	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300005557\|Ga0066704_10224842	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300005602\|Ga0070762_10348469	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300005602\|Ga0070762_11172803	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300005610\|Ga0070763_10751598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Nevskia → Nevskia soli	574	Open in IMG/M
3300005921\|Ga0070766_10107378	All Organisms → cellular organisms → Bacteria	1662	Open in IMG/M
3300006059\|Ga0075017_100950870	Not Available	668	Open in IMG/M
3300006175\|Ga0070712_100460757	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300006176\|Ga0070765_100297838	Not Available	1490	Open in IMG/M
3300006176\|Ga0070765_100303963	Not Available	1475	Open in IMG/M
3300006354\|Ga0075021_10481301	Not Available	785	Open in IMG/M
3300006358\|Ga0068871_101765733	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300009148\|Ga0105243_12757760	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300009522\|Ga0116218_1343710	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300010043\|Ga0126380_12015767	Not Available	528	Open in IMG/M
3300010043\|Ga0126380_12063863	Not Available	523	Open in IMG/M
3300010046\|Ga0126384_10319890	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300010048\|Ga0126373_11670972	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	701	Open in IMG/M
3300010320\|Ga0134109_10244123	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300010360\|Ga0126372_12126900	Not Available	609	Open in IMG/M
3300010376\|Ga0126381_101099949	All Organisms → cellular organisms → Bacteria → Acidobacteria	1148	Open in IMG/M
3300010376\|Ga0126381_101131229	All Organisms → cellular organisms → Bacteria → Acidobacteria	1131	Open in IMG/M
3300010379\|Ga0136449_103113305	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300012202\|Ga0137363_11131268	All Organisms → cellular organisms → Bacteria → Acidobacteria	666	Open in IMG/M
3300012363\|Ga0137390_11053312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	764	Open in IMG/M
3300012923\|Ga0137359_10590174	Not Available	975	Open in IMG/M
3300012925\|Ga0137419_10973084	All Organisms → cellular organisms → Bacteria → Acidobacteria	702	Open in IMG/M
3300012929\|Ga0137404_12104131	Not Available	527	Open in IMG/M
3300012971\|Ga0126369_11689098	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300013296\|Ga0157374_12402659	Not Available	554	Open in IMG/M
3300014166\|Ga0134079_10291580	All Organisms → cellular organisms → Bacteria → Acidobacteria	721	Open in IMG/M
3300014325\|Ga0163163_12055562	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300016404\|Ga0182037_10969403	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300016404\|Ga0182037_11293046	All Organisms → cellular organisms → Bacteria → Acidobacteria	643	Open in IMG/M
3300020004\|Ga0193755_1014701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2577	Open in IMG/M
3300020199\|Ga0179592_10023313	All Organisms → cellular organisms → Bacteria	2765	Open in IMG/M
3300020580\|Ga0210403_10385907	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300020581\|Ga0210399_10253897	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300020581\|Ga0210399_10505726	Not Available	1004	Open in IMG/M
3300020581\|Ga0210399_11416541	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300020583\|Ga0210401_10182190	Not Available	1956	Open in IMG/M
3300021088\|Ga0210404_10224470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300021088\|Ga0210404_10581711	Not Available	636	Open in IMG/M
3300021171\|Ga0210405_10728788	Not Available	764	Open in IMG/M
3300021178\|Ga0210408_10730809	All Organisms → cellular organisms → Bacteria → Acidobacteria	778	Open in IMG/M
3300021180\|Ga0210396_11233512	All Organisms → cellular organisms → Bacteria → Acidobacteria	625	Open in IMG/M
3300021180\|Ga0210396_11242886	Not Available	622	Open in IMG/M
3300021402\|Ga0210385_10442149	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300021403\|Ga0210397_10197517	All Organisms → cellular organisms → Bacteria → Acidobacteria	1436	Open in IMG/M
3300021403\|Ga0210397_10447370	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300021404\|Ga0210389_10485756	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300021405\|Ga0210387_11323793	Not Available	622	Open in IMG/M
3300021406\|Ga0210386_11158082	All Organisms → cellular organisms → Bacteria → Acidobacteria	655	Open in IMG/M
3300021432\|Ga0210384_10000201	All Organisms → cellular organisms → Bacteria → Acidobacteria	91935	Open in IMG/M
3300021432\|Ga0210384_11642528	Not Available	548	Open in IMG/M
3300021432\|Ga0210384_11655336	Not Available	545	Open in IMG/M
3300021433\|Ga0210391_11259542	Not Available	571	Open in IMG/M
3300021475\|Ga0210392_10298364	All Organisms → cellular organisms → Bacteria → Acidobacteria	1154	Open in IMG/M
3300021478\|Ga0210402_10487891	All Organisms → cellular organisms → Bacteria → Acidobacteria	1144	Open in IMG/M
3300021479\|Ga0210410_11083652	Not Available	691	Open in IMG/M
3300021559\|Ga0210409_11258358	Not Available	616	Open in IMG/M
3300025906\|Ga0207699_10771602	Not Available	706	Open in IMG/M
3300025906\|Ga0207699_11164294	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300025915\|Ga0207693_10488764	All Organisms → cellular organisms → Bacteria	961	Open in IMG/M
3300025916\|Ga0207663_10024967	All Organisms → cellular organisms → Bacteria → Acidobacteria	3448	Open in IMG/M
3300026507\|Ga0257165_1051260	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300026555\|Ga0179593_1171263	All Organisms → cellular organisms → Bacteria	2001	Open in IMG/M
3300027173\|Ga0208097_1039476	Not Available	548	Open in IMG/M
3300027334\|Ga0209529_1063348	Not Available	629	Open in IMG/M
3300027370\|Ga0209010_1000697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9745	Open in IMG/M
3300027676\|Ga0209333_1117929	Not Available	719	Open in IMG/M
3300027826\|Ga0209060_10066112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1719	Open in IMG/M
3300027842\|Ga0209580_10466837	Not Available	629	Open in IMG/M
3300027884\|Ga0209275_10220093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1032	Open in IMG/M
3300027894\|Ga0209068_10364938	Not Available	819	Open in IMG/M
3300027908\|Ga0209006_10590701	All Organisms → cellular organisms → Bacteria → Acidobacteria	918	Open in IMG/M
3300028013\|Ga0265350_109707	Not Available	503	Open in IMG/M
3300028906\|Ga0308309_10872810	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300031231\|Ga0170824_120230692	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300031231\|Ga0170824_123016285	All Organisms → cellular organisms → Bacteria → Acidobacteria	1206	Open in IMG/M
3300031446\|Ga0170820_14310293	Not Available	634	Open in IMG/M
3300031469\|Ga0170819_10646135	Not Available	513	Open in IMG/M
3300031715\|Ga0307476_11192508	Not Available	557	Open in IMG/M
3300031754\|Ga0307475_10983841	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031823\|Ga0307478_11258722	Not Available	616	Open in IMG/M
3300031823\|Ga0307478_11783603	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300032205\|Ga0307472_100479723	All Organisms → cellular organisms → Bacteria → Acidobacteria	1066	Open in IMG/M
3300032205\|Ga0307472_100568265	Not Available	994	Open in IMG/M
3300032770\|Ga0335085_11473489	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
3300032893\|Ga0335069_12456568	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300033004\|Ga0335084_11202380	Not Available	757	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	92.52%
Aquatic	Environmental → Aquatic	3.74%
Plants	Host-Associated → Plants	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	92.52%
Sediment	Environmental → Aquatic → Sediment	2.80%
Roots	Host-Associated → Plants → Roots	1.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.87%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.42%
Loam	Environmental → Terrestrial → Soil → Loam	24.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.51%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.30%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027173	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)	Environmental	Open in IMG/M
3300027334	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O2 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028013	Soil microbial communities from Maridalen valley, Oslo, Norway - NSE2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_124555722	3300000789	Soil	MKHLAIATVAAVLLSSAPFPQGKSAGEDEIRIKQLEHAWNQAEAKQEVKEVSSLLADTLAYTDYDGSFMNRAEYLKWVAAPQQKADHLYDEGLNVQVYGDAAVAT
JGI12635J15846_100044429	3300001593	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQAEANQQVNEVSNRVDDTLVYTDYYGSIMNKSEYMKWVGAPDQKPTTSSTKA*
JGIcombinedJ26739_1009374321	3300002245	Forest Soil	MKRLALAILAAILFSGAPFAQDKSAGSDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDG
Ga0062384_1001184892	3300004082	Bog Forest Soil	MKRLALATLAAVLFSSAQFAQEKTVSIDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGS
Ga0066395_102594072	3300004633	Tropical Forest Soil	MKRIAMATILTFAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLVYTDYDGTFMNK
Ga0066673_106842302	3300005175	Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQSEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYL
Ga0070690_1014218611	3300005330	Switchgrass Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVA
Ga0066388_1056852101	3300005332	Tropical Forest Soil	MKRSILLTLGLFLCTSPPFAQEKPANSDEIQIRQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGTLMNKTEYLKWVAAPQQQADHLYDEGLTVHV
Ga0070709_115085281	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLPFATLVALFLCAVQFAQDKSVNADEIQIKQLERAWNQAEARQEVKEVSSLLADSLVYTDYDGSFMNKSE
Ga0070714_1006744052	3300005435	Agricultural Soil	MKRFLLLTIALLLSSSSPFAQEKAASADEIQIRQLERAWNQAEANQEVKEVSNLVDDTLAYTDYDGSFMNKTEYLKWVAAPEQKADHLYDEGLTVHVY
Ga0066687_109494441	3300005454	Soil	MKRFALAALAMLILGTSPFAQDKTANADEIQIRLLERAWNQAEAHQEVKEVSALLADSLVYTDYDGSFMNKSEYMKWVAAPEQKADHMYDEG
Ga0070734_100563983	3300005533	Surface Soil	MKTLLLAMIAGLLCSTALIAQEKSASAEEIQIRQLERAWNQSEAKQEVKEVANLVDDTLVYTDYDGSIMN
Ga0070731_103011911	3300005538	Surface Soil	MKRLALATLAALLFTTTPFAQDKSANSDEIQIRQLERAWNQAEAKQEVKEVSSLVADSLVYTDYDGTLMNKSEYMK
Ga0070733_106508002	3300005541	Surface Soil	MNRLLLAALVALLFPGAPVPQEKSTAGDEIQIRQLERAWNQAEANQQVNEVANLVADTLAYTDYDGSFLK
Ga0070732_106775651	3300005542	Surface Soil	MKRLALATLAALLFTTTPFAQDKSANSDEIQIRQLERAWNQAEAKQEVKEVSSLVADSLVYTDYDGTLMNKSEYMKWVAA
Ga0066692_109714541	3300005555	Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVDPEQKADHIYDEG
Ga0066704_102248421	3300005557	Soil	MKFFALTAILALALYAAPAAQDRAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVD
Ga0070762_103484693	3300005602	Soil	MKFFGLVALSALLLSSFPAAQEKSGSADEIQVRQLERAWNQAEAKQEVKEVSALLADSLVYTDYDGSFMNKSEYMKWVAAPEQKADH
Ga0070762_111728032	3300005602	Soil	MKRLALATLAALLFSSAPFAQEKTVSVDEIRIKQLERAWSQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMK*
Ga0070763_107515981	3300005610	Soil	MNRLVLLTIALILSTSSFAQEKPATSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSIMNKAEYMKWVAAPDQKADHLFDEGMTVHVY
Ga0070766_101073781	3300005921	Soil	MKFVGLVALSALLLSSFPAAQEKSTSADEIQIRQLERAWNQAEAKQEVKEVSALLADSLVYTDYDGSFMNKSEYM
Ga0075017_1009508702	3300006059	Watersheds	MKRLALATLAAVIFSNAPLAQEKTVSVDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGSFM
Ga0070712_1004607572	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFM
Ga0070765_1002978381	3300006176	Soil	MKRLALAMLAAVLFSTAPFAQEKAVSVDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDY
Ga0070765_1003039632	3300006176	Soil	MKRLALATFAVVLFSSAPFAQEKTVSVDEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKWV
Ga0075021_104813012	3300006354	Watersheds	MKRLALAALAALLLTTAPLAQDKSAGADEIQIKQLERAWNQAEARQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKW
Ga0068871_1017657332	3300006358	Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMN
Ga0105243_127577603	3300009148	Miscanthus Rhizosphere	LLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPE*
Ga0116218_13437102	3300009522	Peatlands Soil	MKHLVLATLAAMLFVSAPFPQDKSTAADEIQIKQLERAWNQAEAKQEVKEVSSLLADSLVYTDYDGSFMNKSEYMKWVVSPG
Ga0126380_120157672	3300010043	Tropical Forest Soil	MNRLVLLTIALLFSSSSFAQETPTNADEIQIRQLERAWNQAEAAQQVKEVSNLVDDTLVYTDYDGSLMN
Ga0126380_120638631	3300010043	Tropical Forest Soil	MKRIATALLVTLVFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLVYTDYDGTFMNKAEYLKWV
Ga0126384_103198901	3300010046	Tropical Forest Soil	MKRLLLLTLALLLSSSSFAQETPANADEIQIRQLERAWNQAEAAQQVKEVSNLVDDTLVYTDYDGSLM
Ga0126373_116709721	3300010048	Tropical Forest Soil	MKSFTLLTLGALLFCPARIPQENSAGADEIQIKQLERAWNQAEAKQEVKEVSSLLADSLVYTDYDGS
Ga0134109_102441231	3300010320	Grasslands Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVDPDQKADHIYDE
Ga0126372_121269002	3300010360	Tropical Forest Soil	MRFFALSVVLAFALYPAPASQEKAVSADEIQIRQLERAWNQAEMKQEVGAVDNLVADTLVYTDYDGTFMNKKEYMKWIVNPEQKADHLYDEGLSVQIYGNAAVATGIYRESGT
Ga0126381_1010999492	3300010376	Tropical Forest Soil	MKPLFLPAIALLLSSPSPFAQEKPTSSDEIQIHQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYLKWVAAPEQ
Ga0126381_1011312292	3300010376	Tropical Forest Soil	MKPLFLLAIALLLCSPSPFAQEKPTSSDEIQIHQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYLKWVAAPEQ
Ga0136449_1031133052	3300010379	Peatlands Soil	MKRFALATLAAVLFSSAPFPQDKSTAADEIQIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDASFMNKSEYLKWVVAPQQKADHLYDE
Ga0137383_106042892	3300012199	Vadose Zone Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLARAWNQAEMKQEIGAVDNLVSDSLVYTDYDGTFMHKK
Ga0137363_111312682	3300012202	Vadose Zone Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEIGAVDNLVADSLVYTDYDGTFMHKKEYMKWVIDPDQKADH
Ga0137390_110533121	3300012363	Vadose Zone Soil	MKYLMLLTLAAGLLLPAARFPQGNAVNADEIQIRQLEHAWNQAEAKQEVKEVSSLLAETLVYTDYDGSFMNKSEYM
Ga0137359_105901743	3300012923	Vadose Zone Soil	MKILALAILAALLFSTAPLAQDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADSLVYT
Ga0137419_109730842	3300012925	Vadose Zone Soil	MKRLALAILIASMFSAAPFAQDKSGSADEIQIKQLERAWNQAEAKQEVGALSSLLADSLAYTDYDGSF
Ga0137404_121041311	3300012929	Vadose Zone Soil	MKRLALLTIALLLCSSSPFAQEQPGVADEIQIRQLERAWNQAEANQEVKEVSNLVDDTLVYTDYDGSIMDKAEYMKWVAAPQQK
Ga0126369_116890981	3300012971	Tropical Forest Soil	MKRIAIALLVTLAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLVYTDYDGTFMNKAE
Ga0157374_124026591	3300013296	Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPEQKADHLYDE
Ga0134079_102915802	3300014166	Grasslands Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQSEMKQEVGAVDNLVADSLVYTDYDGSFMNKKEYLKWIVDP
Ga0163163_120555622	3300014325	Switchgrass Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPEQKADHL
Ga0182037_109694031	3300016404	Soil	MKPLFLLAIALLLCSPSPFAQETPTSSDEIQIHQLERAWNQAEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYLKWVAAPEQKADHLYDEGL
Ga0182037_112930461	3300016404	Soil	MKRIAIALLVTFAFCAAPFAQDKSDGPDEIQIRQLERAWNQAEARQEVTEISNLVADSLVYTDYDGSF
Ga0193755_10147011	3300020004	Soil	MKHLAIATVAAVLLSSAPFPQGKSAGEDEIRIKQLEHAWNQAEAKQEVKEVSSLLADTLAYTDYDGS
Ga0179592_100233131	3300020199	Vadose Zone Soil	MKILALAILAALLLSTAPLAQDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADTLVYTDYDGSFMNKP
Ga0210403_103859071	3300020580	Soil	MKLFALTTFAAVLFSGAPFPQEKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLKRVA
Ga0210399_102538971	3300020581	Soil	MKRLVLATLAALLVTTAPVPQDKPASADEIQIKQLERAWNQAEAKQEVKEVASLLADTLVYTDYDGSFMNKS
Ga0210399_105057262	3300020581	Soil	MKILALATLVALLSTTAPLARDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADSLVYTDYD
Ga0210399_114165411	3300020581	Soil	MKFFAFATITAVLFSGAPFPQDKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLKWVAAPEQKADHLYDEG
Ga0210401_101821901	3300020583	Soil	MQFRQNIRTSVSKKAYAMKRLALATFAALLFSSAPFAQEKTVSVDEIRIKQLERAWSQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKWV
Ga0210404_102244701	3300021088	Soil	MRLAILSTLAGLLLSIASVPQGKSPTSDEIQIKQLERAWNQAEAKQEVKEVSAILADTFVYTDYDGSFMNKSEYLKWVTAPQQKLITSTTRASPFRSTATPP
Ga0210404_105817111	3300021088	Soil	MKLLALGTLAAFLFATAPLAQDKSASADEIQIRQLERAWNQAEAKQEVKEVASLLADTLVYTDYDGSFM
Ga0210405_107287882	3300021171	Soil	MRFFALATIVAVLFSGAPFPQDKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLV
Ga0210408_107308091	3300021178	Soil	MKLLPLATLVALFFSTTPSPQDKSPTSDEIQIKQLERAWNQAEAKQEVKEVSALLADTLVYTDYDGSFMNKSEYLKWVAAPQQKADHLYDEGITVQVY
Ga0210396_112335122	3300021180	Soil	MNRFLFLTLALLLCSSSPFAQEKPVASTNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYDGSIMNKSEYLKWVAAPDQKADHLFDEGMTVHVYAN
Ga0210396_112428861	3300021180	Soil	MKLFALATLAAVLFSGAPFPQDKSASAEEIQIKQLDRAWNQAEAQQEVKEVSSLLADTLV
Ga0210385_104421492	3300021402	Soil	MNRMLLLTLALLVCSSSFAQDKPASSDEIQIRQLERAWNQAEANQQVKEVANLVDDTLVYVDYDGSIMNKGEYLKWVAAPDQKADHLFDDGMTAHVYANA
Ga0210397_101975171	3300021403	Soil	MNRFLFLTLALLLCSSSPFAQEKPVASTNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYDGSIMNKSEYMKWVAAPDQ
Ga0210397_104473702	3300021403	Soil	MKLLTIATLGAVLFSGASLPQNKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLK
Ga0210389_104857561	3300021404	Soil	MNRLVLLTLALLLCSSSPFAQEKPASPDEIQIRQLERAWNQAEANQQVSEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRESGTNKGKKYVIRAR
Ga0210387_113237931	3300021405	Soil	MKHLTLAILAAMLFSGTPFAEDKSSGADEIRIKQLERAWNQAEAMQEVKEVSSLLADTLVYTDYDGS
Ga0210386_111580821	3300021406	Soil	MNRLVLLTIALILSTSSFAQEKPATSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSIMNKSEYMKWVAAPEQKADHLFDEGMTVHVYAN
Ga0210384_1000020186	3300021432	Soil	MKLLTIATLGAVLFSGASLPQNKSASADEIQIKQLERAWNQAEAQQEVKEVSSLLADTLVYTDYDGSFMNKAEYLKWVAAPEQKADHLYDEGLTV
Ga0210384_116425282	3300021432	Soil	MKHLVLATLAAVLLSTAPFPQDKSTAADEIQIKQLERAWNQAEAKQEVSEVSSLLADTLVYTDYDGSFMNKAEYL
Ga0210384_116553361	3300021432	Soil	MKHLVLATLAAVIFSSTPFPQDKSAAADEIQIKQLERAWNQAEAKQEVSEVSSLLADTLVYTDYDGSFMNKSEYMKWV
Ga0210391_112595422	3300021433	Soil	MKRLALATLIALLFSSAPFAQEKIVSVDEIRIKQLERAWNQAEAKQEVKEVSTLLADTLVYTDYDGSFMN
Ga0210392_102983641	3300021475	Soil	MNRLVLLTLALLLCSSSPFAQEKPASPDEIQIRQLERAWNQAEANQQVSEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRESGTNKGK
Ga0210402_104878912	3300021478	Soil	MKRLALATLAVVLLSSASIPQDKSTNADEIQIKQLERAWNQAEAKQEVKEVSALLADTFVYTDYDGSFMNK
Ga0210410_110836522	3300021479	Soil	MKLLALGTLAALLFATAPLAQDKSASADEIQIRQLERAWNQAEAKQEVKEVASLLAETLV
Ga0210409_112583581	3300021559	Soil	MNRFALAALAALLFSAAPVPQDKSVSADEIQIKQLERAWNQAEAKQEVKEVSALLADTLAYTDYDGSFM
Ga0207699_107716022	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MKRLALATLAVVLFSSALVPQDRSAGADEIRIKQLERAWNQAEAKQEVKEVSSLLADTLVYTDYDGS
Ga0207699_111642942	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	AALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPEYMKWVAAPEQKADHLYDEGLSTERIASGHSGSVVSRSG
Ga0207693_104887642	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MNRFALATLAALLLCTSPFAQDKAANADEIQIRQLERAWNQAEAHQEVNEVSALLADSLVYTDYDGSFMNKPE
Ga0207663_100249671	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKRFLLLTIALLLSSSSPFAQEKAASADEIQIRQLERAWNQAEANQEVKEVSNLVDDTLAYTDYDGSFMNKTEYLKWVAAPEQKADHL
Ga0257165_10512602	3300026507	Soil	MKRLALAILVASIFSAAPFAQDKPGSTDEIQIRQLERAWNQAEAKQEAGALTTLLADSLAYTDYDGSFMNKSEYMKWVVEPTQ
Ga0179593_11712631	3300026555	Vadose Zone Soil	MKFFALTAILALALYPAPAAQDKAGSADEIQVRQLERAWNQAEMKQEVGAVDNLVADSLVYTDYDGTFMNKKEYLKWIVDPIRRPTIFTTRA
Ga0208097_10394761	3300027173	Forest Soil	MKYLALATLAAVLFSSAPFSQDKSALADEIQIKQLERAWNQAEANQEVKEVSSLLADTLVYTDYDGSFMNKSEYLKWVVSPGQKADHIYDE
Ga0209529_10633481	3300027334	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQAEANQQVNEVSNRVDDTLDTDYYGSIMNKSEYMKWVGAPDQKADHLFDEGMTVHVYGNAAVVNGIYRESGTIKGKHYVIRSRYTTP
Ga0209010_10006975	3300027370	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQSEANQQVNEVSNRVDDTLVYTDYYGSIMNKSEYMKWVGAPDQKPTTSSTKA
Ga0209333_11179293	3300027676	Forest Soil	MNRLLFLTLALLLCSSSPLAQEKPVGSDEIQIRQLERAWNQAEANQQVNEVSNRVDDTLVYTDYYGSIMNKSEYMKWVGAPDQKPTTSSTKA
Ga0209060_100661121	3300027826	Surface Soil	MKTLLLAMIAGLLCSTALIAQEKSASAEEIQIRQLERAWNQSEAKQEVKEVANLVDDTLVYTDYDGSIMNKAEYMKWVAAPEQKADHLFDEGLTVHVYNNAAVV
Ga0209580_104668372	3300027842	Surface Soil	MKRLALATLAALLFTTTPFAQDKSANSDEIQIRQLERAWNQAEAKQEVKEVSSLVADSLVYTDYDGTLMNKSEYMKWVAAP
Ga0209275_102200932	3300027884	Soil	MKRLALATLAALLFSSAPFAQEKTVSVDEIRIKQLERAWSQAEAKQEVKEVSSLLADTLVYTDYDGSFMNKSEYMK
Ga0209068_103649382	3300027894	Watersheds	MKRLALAALAALLLTTAPLAQDKSAGADEIQIKQLERAWNQAEARQEVKEVSSLLADTLVYTDYDGSFMNKSEYMKWVVSPGQKADHIY
Ga0209006_105907011	3300027908	Forest Soil	MNRLVLLTIALILSTSSFAQEKPATSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSFMNKSEYMKW
Ga0265350_1097071	3300028013	Soil	MKRLALATLIALLFSSAPFAQEKTVSVDEIRIKQLERAWNQAEAKQEVKEVASLLADTLVYTDYDGSFMNKSQYMKWVAAPDQKADHLYDE
Ga0308309_108728101	3300028906	Soil	MNRFLFLTLALLLCSSSPFAQEKSSASTNPDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYTDYDGSIMNKSEYMKWVAAPEQK
Ga0170824_1202306922	3300031231	Forest Soil	MNRLLLLTLALLACSSSFAQDKPANSDEIQIRQLERAWNQAEANQQVKEVSNLVDDTLVYVDYDGSIMNKAEY
Ga0170824_1230162852	3300031231	Forest Soil	MNRLLLLTLALFLCATSPLAQEKPATNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRESGTNKGK
Ga0170820_143102931	3300031446	Forest Soil	MNRLLLLTLALFLCATSPLAQEKPATNPDEIQIRQLERAWNQAEASQQVNEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAAVVNGIYRES
Ga0170819_106461351	3300031469	Forest Soil	MKRFLLLTIALLLSSSSPFAQEKAASADEIQIRQLERAWNQAEASQQVHEVSKLVDDTLVYTDYTGSFMNKSEYLKWVAAPDQKADHLFDEGMTVHVYANAA
Ga0307476_111925081	3300031715	Hardwood Forest Soil	MKFFGLVALSALFLSSFPAAQDKSASADEIQIRQLERAWNQAEAKQEVKEVSALLADSLVYTDYDGSFMNKSEYMKWVAAPE
Ga0307475_109838412	3300031754	Hardwood Forest Soil	MKYLALATLATMLFSSAPFPQAKSTVADEIQIKQLERAWNQAEANQEVKEVSSLLADTLVYTDYDGLFMNKSEYMKWIVSPGQKADHI
Ga0307478_112587221	3300031823	Hardwood Forest Soil	MKRLALATLIALLFSSAPFAQEKIVSVDEIRIKQLERAWNQAEAKQEVKEVASLLADTLVYT
Ga0307478_117836031	3300031823	Hardwood Forest Soil	MKIFALAILAALLLSTAPLAQDKSASADEIQIKQLERAWNQAESKQEVQEVSSLLADSLVYTDYDGSFMNKSEYLKWVAAP
Ga0307472_1004797231	3300032205	Hardwood Forest Soil	MKHFALVTMAVLLFSSAPLPQNRPTDPDEIQIKQLERAWNQAEAKQEVKEVSAILADTFVYTDYDGSFMTRAEYMKWIVAPAQKADHLYD
Ga0307472_1005682651	3300032205	Hardwood Forest Soil	MKLFALTAVLAFALYPAPAAQESSGSADEIQIKQLERAWNQAEMKQEVGAVDNLLADSLVYTDYDGSFMNKKEYMKWVVAPEQKADHLFDE
Ga0335085_114734892	3300032770	Soil	MKRMAMALLVTLAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLAYTDYD
Ga0335069_124565682	3300032893	Soil	MKRLLFLTLTLLLSSSSPFAQERPSASINSDEIQIRQLERAWNQAEANQQVKEVANLVDDTLVYTDYDGSLMNKSDYLKWVAAPEQ
Ga0335084_112023801	3300033004	Soil	MKRMAMALLVTLAFCAAPFAQDKSEGPDEIQIRQLERAWNQAEAKQEVTEISNLVADSLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092488

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences