Metagenome / Metatranscriptome Family F092562

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092562
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	61 residues
Representative Sequence	MNKKKAGVAFIVLLTCALAGQALAQGPEIEFKSNADDLTKIRSVLEEFRQDIIHKDGY
Number of Associated Samples	92
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.00 %
% of genes near scaffold ends (potentially truncated)	87.85 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.505 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (11.215 % of family members)
Environment Ontology (ENVO)	Unclassified (24.299 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.991 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.81% β-sheet: 0.00% Coil/Unstructured: 44.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07883	Cupin_2	5.61
PF12867	DinB_2	5.61
PF05163	DinB	4.67
PF06580	His_kinase	4.67
PF02687	FtsX	2.80
PF00326	Peptidase_S9	2.80
PF02567	PhzC-PhzF	1.87
PF01042	Ribonuc_L-PSP	1.87
PF03781	FGE-sulfatase	1.87
PF00144	Beta-lactamase	1.87
PF07676	PD40	1.87
PF00072	Response_reg	0.93
PF00583	Acetyltransf_1	0.93
PF02633	Creatininase	0.93
PF13673	Acetyltransf_10	0.93
PF02517	Rce1-like	0.93
PF12704	MacB_PCD	0.93
PF08240	ADH_N	0.93
PF04073	tRNA_edit	0.93
PF00361	Proton_antipo_M	0.93
PF04397	LytTR	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	4.67
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	4.67
COG3275	Sensor histidine kinase, LytS/YehU family	Signal transduction mechanisms [T]	4.67
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.87
COG0384	Predicted epimerase YddE/YHI9, PhzF superfamily	General function prediction only [R]	1.87
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.87
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.87
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.87
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1402	Creatinine amidohydrolase/Fe(II)-dependent FAPy formamide hydrolase (riboflavin and F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.93
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.50 %
Unclassified	root	N/A	21.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.50 %
Unclassified	root	N/A	21.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.50 %
Unclassified	root	N/A	21.50 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.36 %
Unclassified	root	N/A	21.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.80 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	21.50 %
Unclassified	root	N/A	21.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.87 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.50 %
Unclassified	root	N/A	21.50 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.50 %
Unclassified	root	N/A	21.50 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.93 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.50 %
Unclassified	root	N/A	21.50 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.93 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.50 %
Unclassified	root	N/A	21.50 %
pseudomallei group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group	0.93 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.50 %
Unclassified	root	N/A	21.50 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	0.93 %
Burkholderia thailandensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	21.50 %
Unclassified	root	N/A	21.50 %
Burkholderia thailandensis E264	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis → Burkholderia thailandensis E264	0.93 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001074\|JGI12569J13230_101112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300001593\|JGI12635J15846_10344144	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300004082\|Ga0062384_101313342	Not Available	530	Open in IMG/M
3300004267\|Ga0066396_10069902	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300004479\|Ga0062595_100539759	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300004479\|Ga0062595_102570062	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300004635\|Ga0062388_101922492	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005921\|Ga0070766_10538830	Not Available	779	Open in IMG/M
3300005921\|Ga0070766_10938038	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300006050\|Ga0075028_100334700	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300006162\|Ga0075030_100107869	All Organisms → cellular organisms → Bacteria	2267	Open in IMG/M
3300006162\|Ga0075030_101098733	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300006176\|Ga0070765_101683961	Not Available	596	Open in IMG/M
3300009093\|Ga0105240_10247194	All Organisms → cellular organisms → Bacteria	2065	Open in IMG/M
3300009143\|Ga0099792_11024247	Not Available	553	Open in IMG/M
3300009545\|Ga0105237_10477221	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300009551\|Ga0105238_11041052	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300009623\|Ga0116133_1191505	Not Available	547	Open in IMG/M
3300009683\|Ga0116224_10502886	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300010379\|Ga0136449_102154936	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300011269\|Ga0137392_10900172	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300012096\|Ga0137389_10895135	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300012210\|Ga0137378_10745711	All Organisms → cellular organisms → Bacteria	891	Open in IMG/M
3300012362\|Ga0137361_11826179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300012971\|Ga0126369_10489319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1286	Open in IMG/M
3300013102\|Ga0157371_10916632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300015053\|Ga0137405_1395979	All Organisms → cellular organisms → Bacteria	1512	Open in IMG/M
3300015053\|Ga0137405_1395982	Not Available	750	Open in IMG/M
3300015241\|Ga0137418_10411333	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300015371\|Ga0132258_13087955	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300015373\|Ga0132257_104598679	Not Available	502	Open in IMG/M
3300017823\|Ga0187818_10218626	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300017933\|Ga0187801_10051032	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300017943\|Ga0187819_10629529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300017995\|Ga0187816_10242945	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300017995\|Ga0187816_10464048	Not Available	568	Open in IMG/M
3300018001\|Ga0187815_10519555	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300018038\|Ga0187855_10232991	All Organisms → cellular organisms → Bacteria	1082	Open in IMG/M
3300018038\|Ga0187855_10380538	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300020581\|Ga0210399_10115200	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300021088\|Ga0210404_10554531	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	651	Open in IMG/M
3300021168\|Ga0210406_11373320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300021181\|Ga0210388_10581089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	981	Open in IMG/M
3300021405\|Ga0210387_11587254	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300021411\|Ga0193709_1124951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300021559\|Ga0210409_10631793	All Organisms → cellular organisms → Bacteria → Acidobacteria	940	Open in IMG/M
3300022717\|Ga0242661_1091682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300024227\|Ga0228598_1001480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5168	Open in IMG/M
3300024330\|Ga0137417_1304669	All Organisms → cellular organisms → Bacteria	2393	Open in IMG/M
3300025404\|Ga0208936_1036092	Not Available	661	Open in IMG/M
3300025414\|Ga0208935_1047066	Not Available	576	Open in IMG/M
3300025905\|Ga0207685_10459202	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300025905\|Ga0207685_10788445	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300025913\|Ga0207695_10993104	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300026041\|Ga0207639_10526318	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300026088\|Ga0207641_10203907	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300026310\|Ga0209239_1345161	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300026332\|Ga0209803_1187255	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300026490\|Ga0257153_1119748	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300026498\|Ga0257156_1108828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	577	Open in IMG/M
3300026557\|Ga0179587_10359207	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300026557\|Ga0179587_10386581	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300026721\|Ga0208841_100306	All Organisms → cellular organisms → Bacteria	1296	Open in IMG/M
3300027080\|Ga0208237_1030924	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300027562\|Ga0209735_1101336	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300027745\|Ga0209908_10196652	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300027829\|Ga0209773_10079035	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300027911\|Ga0209698_10135041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	2033	Open in IMG/M
3300027911\|Ga0209698_10745102	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300028380\|Ga0268265_10243675	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300028747\|Ga0302219_10055552	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300028801\|Ga0302226_10147199	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300028871\|Ga0302230_10276937	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300028906\|Ga0308309_11029801	Not Available	713	Open in IMG/M
3300028906\|Ga0308309_11433329	Not Available	591	Open in IMG/M
3300029636\|Ga0222749_10220928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300029943\|Ga0311340_10272003	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1636	Open in IMG/M
3300029944\|Ga0311352_10199203	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1707	Open in IMG/M
3300029944\|Ga0311352_10497270	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
3300030007\|Ga0311338_10641704	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300030399\|Ga0311353_10476414	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300030503\|Ga0311370_10459942	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300030503\|Ga0311370_11210635	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300030659\|Ga0316363_10438567	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300030760\|Ga0265762_1008151	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300031231\|Ga0170824_112688190	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031231\|Ga0170824_123313178	Not Available	714	Open in IMG/M
3300031236\|Ga0302324_102150837	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300031446\|Ga0170820_12826328	Not Available	895	Open in IMG/M
3300031474\|Ga0170818_115536988	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300031708\|Ga0310686_116423838	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300031718\|Ga0307474_10571001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	890	Open in IMG/M
3300031720\|Ga0307469_10017944	All Organisms → cellular organisms → Bacteria	3748	Open in IMG/M
3300031754\|Ga0307475_10212726	All Organisms → cellular organisms → Bacteria	1547	Open in IMG/M
3300031820\|Ga0307473_11259041	Not Available	552	Open in IMG/M
3300031820\|Ga0307473_11508254	Not Available	510	Open in IMG/M
3300031837\|Ga0302315_10134578	All Organisms → cellular organisms → Bacteria	1557	Open in IMG/M
3300031962\|Ga0307479_11420051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300032180\|Ga0307471_102776366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300033755\|Ga0371489_0374483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia → pseudomallei group → Burkholderia thailandensis → Burkholderia thailandensis E264	662	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.72%
Host-Associated	Host-Associated	10.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.96%
Aquatic	Environmental → Aquatic	17.76%
Plants	Host-Associated → Plants	10.28%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	59.81%
Freshwater	Environmental → Aquatic → Freshwater	13.08%
Peat	Environmental → Terrestrial → Peat	12.15%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.61%
Sediment	Environmental → Aquatic → Sediment	4.67%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.86%
Loam	Environmental → Terrestrial → Soil → Loam	14.02%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	13.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.21%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.54%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001074	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN397	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300019877	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025404	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_10 (SPAdes)	Environmental	Open in IMG/M
3300025414	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026721	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN395 (SPAdes)	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027745	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2M	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028871	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12569J13230_1011122	3300001074	Soil	MNKRKAGLVFIALITCALAGQALAQGQEIEFKSNADDLAKIRSVLEEFRQDIIRKDGYALTKLVLNPDVLF
JGI12635J15846_103441443	3300001593	Forest Soil	MNKKKAVVALIALLTWALAGQALAQGQELELKSNADDLAKIRGVLEEFRQDIIHKDGYALTKLMLNPKVLLHEI
Ga0062384_1013133421	3300004082	Bog Forest Soil	MSDEQKESGRSIALLTCALAGRALAQGPEIKFNSNADDLAKIRSVLEEFRQDIIHKDGY
Ga0066396_100699022	3300004267	Tropical Forest Soil	MNKKKAGAAFIVLLTCGLVTQAFAQGQELKFNSNADDIAKIGSLLEEFRQDIIHKDGYA
Ga0062595_1005397592	3300004479	Soil	MNRKKAGVAFIVLVTCALAGQALAQGQETEFKSDLTKIRSMVEEFR
Ga0062595_1025700621	3300004479	Soil	MKKHMSKKKAVVGFIALLTCALAGQALAQSPEYKSKADDLAKIRSVLEEFRQD
Ga0062388_1019224922	3300004635	Bog Forest Soil	MNNQMNRKKACVTFIVLLTCALASQALAQGQEIELKSNSDDLTKISSVVEEFRQDIIHK
Ga0066687_109938831	3300005454	Soil	VLLTCGLIVQAFAQDRELKFNSNADDIRKISSLLEEFRQDIIHKDGYALTKLILNPDVLFHH
Ga0070766_105388301	3300005921	Soil	MNNQMNKKKACVAFIALLTCALAGRALAQGPEFKSNADDIAKIRSVVEEF
Ga0070766_109380381	3300005921	Soil	MNNQMNKKRAGVAFIALLTCALAGQALAQGPEIEFKSNADDLTKIRSVLEEFRQDIIHKD
Ga0075028_1003347002	3300006050	Watersheds	MNKKKACVAFIVLLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKDGYALTKLVLN
Ga0075030_1001078691	3300006162	Watersheds	MNKQMNKKKAVVVFIALLTCALAGQTLAQGPEYKSNADDLTKIRSMLEEFRQDIIHKDGY
Ga0075030_1010987331	3300006162	Watersheds	MNKKKAVVAFIALLTFALAGQALAQGPEYKSNADDLTKIRSVLEEFRQD
Ga0070716_1013042792	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MSKKRAGAVFIMFLTCGLITQAFAQSQEPKFNSNADDIRKIGNLVEEFRQDIIRKDG
Ga0070765_1016839611	3300006176	Soil	MNKTKPCVAFILLLTCALAGQALAQGQETEFKSNTDDLTKIRSVLEEF
Ga0105240_102471941	3300009093	Corn Rhizosphere	MNKKNAGVVFILLLTGVFAGQVLAQGSGIKFNSNADDIAKIGILLEEFRQDIIHKDGYALTKLLLYPSVLFH*
Ga0099792_110242471	3300009143	Vadose Zone Soil	MNKQMNKKKAVVVFIALLTCALAGQALAQGPEYKSNADDLAKIRSVLEEFRQDIIH
Ga0105237_104772211	3300009545	Corn Rhizosphere	MNKKNAGVVIILLLTGVLVGQAFAQCSVVKFNSNADDVAKINTVLEEFRQDIIHKDGYALTKLVLNP
Ga0105238_110410523	3300009551	Corn Rhizosphere	MKGIAPMNKKNAGVVFILLLTGVFAGQVLAQGSGIKFNSNADDIAKIGILLEEFRQDIIHKD
Ga0116133_11915052	3300009623	Peatland	MNKKKAVVAFIALLTCALTGQALAQSQEIEYKSNADDLTKIRSVLEEFRQDIVH
Ga0116224_105028861	3300009683	Peatlands Soil	MNKKKVCIVFIALLTWALAGQALAQGPEFKSNADDLAKISSVVEEFRQDLIHKDGYAITKLLLNPDVL
Ga0136449_1021549363	3300010379	Peatlands Soil	MNKKKAGVAFIVLLTCALAGQALAQGPEIEFKSNADDLTKIRSVLEEFRQDIIHKDGY
Ga0126383_126425771	3300010398	Tropical Forest Soil	MKGKSKMSKKRAGAVFIMFLTCGLVTQAFAQGQDLKFNSNADDIRKIGNLLEEFRQDIIRKD
Ga0124850_10005857	3300010863	Tropical Forest Soil	MNKKKAGAVFAVLLTCGLIAQAFAQGQEPKFNSNADDMTKIGNLLEEFRQDIFAKTATP*
Ga0137392_109001722	3300011269	Vadose Zone Soil	MNKQMNKKKAVVVFIVLLTCALAGQALARGQEIEFKSNADDLAKIRSVLEEFRQDII
Ga0137389_108951351	3300012096	Vadose Zone Soil	MKGKSQMNRKKACVVFIALLTCALAGQALAQGPEIEFKSNADDLTKIRSVLEEFRQDIIHKDAYGIT
Ga0137378_107457112	3300012210	Vadose Zone Soil	MNKRKAGLVFIALITCALAGQALAQGQEIEFKSNADDLAKIRSVLEEFRQDIIR
Ga0137361_118261791	3300012362	Vadose Zone Soil	MNKKKACVAFIVLLTCAFAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIRKDGYA
Ga0126375_116918182	3300012948	Tropical Forest Soil	MKGKSQMNKTKAGAAVIVLLTCGVITQAFAQGRELKFNSNAADITAIGNLVEEFRQDVIR
Ga0126369_104893193	3300012971	Tropical Forest Soil	MNKKKAGAAFIMLLTCGLITQSFAQGQEIKSNSNADDIAQIGSVLEEFRQDIIHKDP
Ga0126369_133272281	3300012971	Tropical Forest Soil	MNKKKAGAVFIVVLACGLVTQAFAQGQELKFNSNADDITKIGNLLEEFRQDIIRKD
Ga0157371_109166323	3300013102	Corn Rhizosphere	MKGIAPMNKKNAGVVFILLLTGVFAGQVLAQGSGIKFNSNADDIAKIGILLEEFRQDIIHKDGYALT
Ga0137405_13959791	3300015053	Vadose Zone Soil	MNKKKACVAFIVLLTCALVGQALAQGPAIEFKSNADDLTKIRGVLEESACWRS
Ga0137405_13959822	3300015053	Vadose Zone Soil	MNKKKACVAFIVLLTCALVGQALAQGPAIEFKSNADDLTKIRGVLEEFRQGIIHKDGYA
Ga0137418_104113332	3300015241	Vadose Zone Soil	MNKKNAGVVFILLLTCVLAGQALAQGSDIKFKSNADDLAKISSVVDEFRQDII
Ga0132258_130879552	3300015371	Arabidopsis Rhizosphere	MNKKKTRAAFILVLMCVLAGQALAQGSGTKFNSNGDDLTKIER*
Ga0132257_1045986791	3300015373	Arabidopsis Rhizosphere	VKGKVSMNKKNAGAVFILLFTCVLAGQAFAQGSGIKFNSNADDLAKINSVLEEFRQDI
Ga0187818_102186263	3300017823	Freshwater Sediment	MDKKKAGVAFIALLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKD
Ga0187801_100510321	3300017933	Freshwater Sediment	MNRKKAGVAFIVLVTCALAGQALAQGQEIEFKSNADDLTKIRSVVEEFRQDIIHKDG
Ga0187819_106295292	3300017943	Freshwater Sediment	MSKKRTAAVFFALLTCALAGQALAQGQEIEFKSNADDLAKIRGVVEEFRQDISRKDGYAISKLILNPDVLFHH
Ga0187816_102429451	3300017995	Freshwater Sediment	KCQMNKKKACVVFIVLLTCALAGYALAQGPEFKSNADDLAKISSVVEEFRQDIIHKDGCIQCAYDE
Ga0187816_104640482	3300017995	Freshwater Sediment	MDKKKAGAAFIALLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIH
Ga0187815_105195551	3300018001	Freshwater Sediment	MNKKKAGIVFIALLTCALAGQALAQGSEIEFKSNADDLTKIRSVLEEF
Ga0187855_102329911	3300018038	Peatland	MNKKKACVAFIVLLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKD
Ga0187855_103805381	3300018038	Peatland	MNNQMNKKKAGVAFIALLTCALAGQALARGQEIEYKSNADDLTKIRSVLEEFRQDI
Ga0193722_10697081	3300019877	Soil	MNKKNAGAAFILVLTCVLAGQAFAQGQELKFNSNADDIRKIGNLLEEFRQDII
Ga0210399_101152003	3300020581	Soil	MNKKKACVAFIVLLTCALVGQALAQGPEIEFKSNADDLTKIRGVLEEFR
Ga0210404_105545311	3300021088	Soil	VNKKKACVAFFVLLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKDGYALTKLVLNPDVLFH
Ga0210406_113733201	3300021168	Soil	MNRKKACVAFIVLLTCALAGQALAQGQEIEFKSNADDLTKIRSVVEEFRQDIIHKDGYAITKLILNP
Ga0210388_105810891	3300021181	Soil	MNKKKAGVAFIVLLTCALAGQALAQGPGIEFKSNADDLAKISSVLEEFRQDIVHKDGYAITKLMLNPDVLFHHIN
Ga0210387_115872542	3300021405	Soil	MNNQMNKKRAGVAFIALLTCALAGQALAQGPEIEFKSNADDLTKIRSVL
Ga0193709_11249512	3300021411	Soil	MNKKKAGVAFIVLLTSALAGQALAQGPEFKSNADDLAKIRSMLEEFRRDI
Ga0210409_106317931	3300021559	Soil	MNRKKAAVAFIVLLTCALAGQALAQGPEFKSNADDLAKISSVVEEFRQDINHKDGYALTK
Ga0242661_10916821	3300022717	Soil	MNKKKAGIAFIALLTCALAGQALAQGPEIKFNSNADDLTKIRSVLEEFRQDIIHKDGYALTKL
Ga0228598_10014806	3300024227	Rhizosphere	MNKQMNKKKAVVVFIALLTCALAGQALAQGPEFKSNADDLAKISSVLEEFRQDII
Ga0137417_13046693	3300024330	Vadose Zone Soil	MNKRKAGLVFIALITCALAGQALAQGQEIEFKSNADDLAKIRSVLEEFRQDIIRKDGYALTKLVLNPD
Ga0208936_10360921	3300025404	Peatland	MNKKKAVVAFIALLTCALTGQALAQSQEIEYKSNADDLTNIRCVLEEFRQDIVHKDAYALTK
Ga0208935_10470663	3300025414	Peatland	MNKKKAVVAFIALLTCALTGQALAQSQEIEYKSNADDLTKIRS
Ga0207685_104592022	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	QMNKKKAGVAFIVLLTCALAGQALAQGPEFKSNADDLAKIRSMLEEFRQEIIHKNGYAITKLMLNSNVLFHHTNTHS
Ga0207685_107884451	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MNKKKAGVAFIVLLTCALAGQALAQGPEFKSNADDLAKIRSVLEEF
Ga0207695_109931042	3300025913	Corn Rhizosphere	MNKKNAGVVFILLLTGVFAGQVLAQGSGIKFNSNADDIAKIGILLEEFRQDIIHKDGYALTKLML
Ga0207639_105263181	3300026041	Corn Rhizosphere	MNKKNAGVVFILLLTGVFAGQVLAQGSGIKFNSNADDIAKIGILLEEFRQDIIHKDGYALTKLMLYPSVL
Ga0207641_102039072	3300026088	Switchgrass Rhizosphere	MNKKNAGVVIILLLTGVLVGQAFAQGSVVKFNSNADDVAKINTVLEEFRQDIIHKDGYALTKLVLNPN
Ga0209239_13451611	3300026310	Grasslands Soil	MNKKKAGVAFIVLLTCALAGQALAQGPEFNSNADDLAQIRSVLEAFRQ
Ga0209803_11872551	3300026332	Soil	MNKKKAGVAFIVLLTCALAGQALAQGPEFNSNADDLAQIRSVLE
Ga0257153_11197481	3300026490	Soil	MNRKKACVAFIVLLTCALAGQALAQGQEIKFKSNADDLTKIRSVLEEFRQDIIRKDGYAITKLVLN
Ga0257156_11088281	3300026498	Soil	MNKKKAGVAFIVLLTCALAGQALAQGPEFKSNADDLAKIRSVLEEFRQDIIHKDGYALTKLVLNPDVLFHH
Ga0179587_103592071	3300026557	Vadose Zone Soil	MNKKNAGVVFILLLTCVLAGQALAQGSDIKFKSNADDLAKISSVVDEFRQDIIHKDGYALTKLILNPDVLFHHINN
Ga0179587_103865812	3300026557	Vadose Zone Soil	MNNQRNEKRAGVAFIALLACALAGQALALGPEIEFKSNADDLTKI
Ga0208841_1003061	3300026721	Soil	MNKRKAGLVFIALITCALAGQALAQGQEIEFKSNADDLAKIRSVLEEFRQDIIHKDGYAITKLMLNPNVLFH
Ga0208237_10309242	3300027080	Forest Soil	MNKKKAGVVFIVLLTGVLAGQALAQSPEFKSNADDLAKIRSVVEEYRQDIIRKDGYAITKLVLNHSVL
Ga0209735_11013361	3300027562	Forest Soil	MNKQMNKKKAVVVFIALLTCALAGQALAQGPEYKSNADDLTKIRSMLEEFRQDIIHKDGYAITKLMLNPNV
Ga0209908_101966521	3300027745	Thawing Permafrost	MNNQMNKKKAVVAFIALLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKDGYALTKLCLLYTSRCV
Ga0209773_100790351	3300027829	Bog Forest Soil	MKNQMNKKKAVIAFIALLTCALAGQALAQGQEIEYKSNADDLTKIRSV
Ga0209698_101350413	3300027911	Watersheds	MNKQMNKKKAVVVFIALLTCALAGQALAQGPEYKSNADDLTKIRSVLEEFRQ
Ga0209698_107451022	3300027911	Watersheds	MNKKKAVVAFIALLTFALAGQALAQGPEYKSNADDLTKIRSVLEEFRQ
Ga0268265_102436751	3300028380	Switchgrass Rhizosphere	MNKKNAGVVIILLLTGVLVGQAFAQGSVVKFNSNADDVAKINTVLEEFRQDIIHKDGYALTKLVLNPNVLFHALDDQEQV
Ga0302219_100555521	3300028747	Palsa	MNKKKAGVAFIVLLTCTLAGQALAQGPEIEFKSNADDLTKIRSLVEEFRQDIIHKDGY
Ga0302226_101471991	3300028801	Palsa	MNKKKAGVAFIAFLTCALAGQALAQEPDDKSNADDLSKIRSVLEEF
Ga0302230_102769372	3300028871	Palsa	MNKKKAGVAFIAFLTCALAGQALAQEPEYKSNADDLSKIRSVLEEFRQDIIHKDGDALTKLVLNPDVLFHHINN
Ga0308309_110298011	3300028906	Soil	MNKTKPCVAFILLLTCALAGQALAQGQETEFKSNTDDLTKIRSVLEEFRQDIIHKDGLALTKLMLNPEV
Ga0308309_114333291	3300028906	Soil	MNKKKACVAFIVLLTCALVGQALAQGPEIEFKSNADDLTKIRGVLEE
Ga0222749_102209282	3300029636	Soil	MNSQLNKKKAGVFIALLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKDGYALTKLVLNPNVLF
Ga0311340_102720033	3300029943	Palsa	MNKKKAGVAFIVLLTCTLAGQALAQGPEIEFKSNADDLTKIRSLVEEFRQDIIHKDGYALTKLMLNPNVLFHEIDQPERG
Ga0311352_101992033	3300029944	Palsa	MNKKKAGVAFIAFLTCALAGQALAQEPDDKSNADDLSKIRSVLEEFRQDIIHKD
Ga0311352_104972703	3300029944	Palsa	MNKKKAGVAFIVLLTCTLAGQALAQGPEIEFKSNADDLTKIRSLVEEFRQDIIHKDGYALTKLMLNPNVLFHEID
Ga0311338_106417043	3300030007	Palsa	MNKKKAGVAFIVLLTCTLAGQALAQGPEIEFKSNADDLTKIRSLVEEFRQDIIHKDGYALTKLMLNPNVLFHEIDRPERG
Ga0311353_104764141	3300030399	Palsa	MNKKKAGVAFIAFLTCALAGQALAQEPDDKSNADDLSKIRSVLEEFRQDIIHKDGDALTKLVLNPDVLFHHINN
Ga0311370_104599423	3300030503	Palsa	MNKKKAGVAFIAFLTCALAGQALAQEPDDKSNADDLSKIRSVLEEFRQDIIHKDGDAL
Ga0311370_112106351	3300030503	Palsa	MNKKKAGVAFITLLTCALAGQALAQGPEFNSNADDLTKIRSVVEEFRQDIIHKDGYALTKLMLNPNVLFHEIDQPERG
Ga0316363_104385671	3300030659	Peatlands Soil	MNRKKARVAFIVLLTCALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDIIHKDGYALTKLVLNP
Ga0265762_10081513	3300030760	Soil	MNKKKAVVALIALLTWALAGQALAQGQELELKSNADDLAKIRGVLEEFRQDIIHKDGYAL
Ga0170824_1126881901	3300031231	Forest Soil	MNKRKAGVAFIALLACALAGQALAQGQEIKFKSNADDLTKIHSVLEEFRQDIIHKDGY
Ga0170824_1233131781	3300031231	Forest Soil	MNKKNAVVAFIALLTFALAGQALAQGQEIEYKSNADDLTKIRSVLEEFRQDIIHKDAYALTKLVLNPNI
Ga0302324_1021508372	3300031236	Palsa	MSDEKKKAGAAFIVLLTCALAGQALAQGPEIEFKSNADDPRKIRSLVEEFRQDMIHKDGYALTKLMLNPN
Ga0170820_128263281	3300031446	Forest Soil	MNKKKAVVVFIALLTFALAGQALAQGQEIEFKSNADDLTKIRSVLEEFRQDVIHK
Ga0170818_1155369881	3300031474	Forest Soil	MNKKKAGIVFIVLLTCVLAGQALAQGQEIKFKSNADDLTKIHSVLEEFRQDIIHKDGY
Ga0310686_1164238383	3300031708	Soil	MNNQMNKKKAGIIFIALLTCALAGQALAQGSEIEFKSNADDLTKIRSVLEEFRQDI
Ga0307474_105710012	3300031718	Hardwood Forest Soil	MNKKKVGILFIVLLTCVLAGQALAQGPEFKSNADDLAKISSVVEEFRQDLIHKDGYAITKLILNPDVLFHHINN
Ga0307469_100179441	3300031720	Hardwood Forest Soil	MNNRMNKKKAVVAFIALLTCAWAGQTLAQGQEIEYKSNPDDLMKIRGVLEEFRQDIIHKDGYAITKLMLNPNVLFHH
Ga0307475_102127262	3300031754	Hardwood Forest Soil	MNKKNAGVAFILLLTCVFVDQAFAQESGTKFNSNADDLKKISSLLEEFRQDIIHKDGYALTKLMLNPNVLFH
Ga0307473_112590412	3300031820	Hardwood Forest Soil	MNRKKACVACIVLLACALAGQALAQGQGLEFKSNADDLAKISSVVEEFRQDIIHKDGYAITK
Ga0307473_115082541	3300031820	Hardwood Forest Soil	MNKRKAGLVFIALITCALAGQALAQGQEIEFKSNADDLAKIRSVL
Ga0302315_101345781	3300031837	Palsa	MNKKKAGVAFIAFLTCALAGQALAQEPDDKSNADDLSKIRSVLEEFRQDIIH
Ga0307479_114200511	3300031962	Hardwood Forest Soil	MNKKKAGVAFIVLLTCALAGQALAQGPEFKSNADDLAKIRSMLEEFRQDIIHKDGYAITKLVLNPNVLFHHT
Ga0307471_1027763662	3300032180	Hardwood Forest Soil	MNKKKACVAFIVLLTGALVGQALAQGPEIEFKSNADDLTKIRGVLEEFRQGIIHKDGYALTKLVLNPDVLFHHIN
Ga0371489_0374483_454_660	3300033755	Peat Soil	MNKKKAGMALIALLTCALVGQALAQGPEIEFNSNADDLAKIRSVLEEFRQDIIHKDGYALTKLMLNPNV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092562

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences