Metagenome / Metatranscriptome Family F092627

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092627
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	PDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Number of Associated Samples	83
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	91.59 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (54.206 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (33.645 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.682 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.68% β-sheet: 0.00% Coil/Unstructured: 49.32%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13620	CarboxypepD_reg	2.80
PF10011	DUF2254	2.80
PF13564	DoxX_2	1.87
PF00903	Glyoxalase	1.87
PF08818	DUF1801	1.87
PF14023	DUF4239	1.87
PF13590	DUF4136	1.87
PF00072	Response_reg	0.93
PF03976	PPK2	0.93
PF00107	ADH_zinc_N	0.93
PF02424	ApbE	0.93
PF00174	Oxidored_molyb	0.93
PF00486	Trans_reg_C	0.93
PF00152	tRNA-synt_2	0.93
PF02371	Transposase_20	0.93
PF08308	PEGA	0.93
PF06271	RDD	0.93
PF00144	Beta-lactamase	0.93
PF01758	SBF	0.93
PF00672	HAMP	0.93
PF01594	AI-2E_transport	0.93
PF07589	PEP-CTERM	0.93
PF07676	PD40	0.93
PF04679	DNA_ligase_A_C	0.93
PF00069	Pkinase	0.93
PF05345	He_PIG	0.93
PF13505	OMP_b-brl	0.93
PF13442	Cytochrome_CBB3	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.74
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	1.87
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	1.87
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	1.87
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.93
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.93
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.93
COG2269	Elongation factor P--beta-lysine ligase (EF-P beta-lysylation pathway)	Translation, ribosomal structure and biogenesis [J]	0.93
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.93
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.93
COG0017	Aspartyl/asparaginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0173	Aspartyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	0.93
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.93
COG1190	Lysyl-tRNA synthetase, class II	Translation, ribosomal structure and biogenesis [J]	0.93
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.93
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.21 %
Unclassified	root	N/A	45.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.21 %
Unclassified	root	N/A	45.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.21 %
Unclassified	root	N/A	45.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	29.91 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.54 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.54 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.82 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	6.54 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.54 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.74 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.54 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Occallatibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.54 %
Occallatibacter riparius	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig109930	Not Available	530	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101590182	Not Available	508	Open in IMG/M
3300002914\|JGI25617J43924_10307517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	546	Open in IMG/M
3300004635\|Ga0062388_100257542	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1425	Open in IMG/M
3300005332\|Ga0066388_104723773	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300005435\|Ga0070714_100066991	Not Available	3095	Open in IMG/M
3300005544\|Ga0070686_100104070	Not Available	1922	Open in IMG/M
3300005545\|Ga0070695_100701164	Not Available	803	Open in IMG/M
3300005602\|Ga0070762_10461807	Not Available	827	Open in IMG/M
3300005764\|Ga0066903_103884721	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	802	Open in IMG/M
3300006173\|Ga0070716_100146714	Not Available	1512	Open in IMG/M
3300007788\|Ga0099795_10574641	Not Available	534	Open in IMG/M
3300010043\|Ga0126380_11923302	Not Available	539	Open in IMG/M
3300010046\|Ga0126384_10241231	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1455	Open in IMG/M
3300010048\|Ga0126373_10796654	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300010048\|Ga0126373_12535985	Not Available	571	Open in IMG/M
3300010048\|Ga0126373_13001434	Not Available	526	Open in IMG/M
3300010358\|Ga0126370_11609357	Not Available	622	Open in IMG/M
3300010359\|Ga0126376_12364916	Not Available	578	Open in IMG/M
3300010360\|Ga0126372_11971139	Not Available	630	Open in IMG/M
3300010376\|Ga0126381_101030856	Not Available	1188	Open in IMG/M
3300010376\|Ga0126381_101314079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1045	Open in IMG/M
3300010376\|Ga0126381_102380269	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300010400\|Ga0134122_10645097	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300010868\|Ga0124844_1198448	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010868\|Ga0124844_1309670	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300012202\|Ga0137363_10393645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1153	Open in IMG/M
3300012202\|Ga0137363_10830052	Not Available	784	Open in IMG/M
3300012203\|Ga0137399_10716077	Not Available	842	Open in IMG/M
3300012918\|Ga0137396_10924339	Not Available	638	Open in IMG/M
3300012922\|Ga0137394_11523985	Not Available	527	Open in IMG/M
3300012925\|Ga0137419_11620397	Not Available	551	Open in IMG/M
3300012948\|Ga0126375_10529624	Not Available	885	Open in IMG/M
3300014165\|Ga0181523_10007570	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8382	Open in IMG/M
3300014200\|Ga0181526_10339276	All Organisms → cellular organisms → Bacteria → Acidobacteria	956	Open in IMG/M
3300015374\|Ga0132255_104470278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300016270\|Ga0182036_10772405	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	781	Open in IMG/M
3300016270\|Ga0182036_11631694	Not Available	543	Open in IMG/M
3300016294\|Ga0182041_11716770	Not Available	581	Open in IMG/M
3300016319\|Ga0182033_11754848	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300016319\|Ga0182033_11929035	Not Available	537	Open in IMG/M
3300016341\|Ga0182035_11125126	Not Available	699	Open in IMG/M
3300016341\|Ga0182035_11593268	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Occallatibacter → Occallatibacter riparius	589	Open in IMG/M
3300016357\|Ga0182032_11946988	Not Available	515	Open in IMG/M
3300016422\|Ga0182039_11133417	Not Available	705	Open in IMG/M
3300016422\|Ga0182039_11958766	Not Available	538	Open in IMG/M
3300016702\|Ga0181511_1314387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	680	Open in IMG/M
3300016750\|Ga0181505_10453633	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300017934\|Ga0187803_10250016	Not Available	702	Open in IMG/M
3300017937\|Ga0187809_10130861	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300017974\|Ga0187777_10322340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1059	Open in IMG/M
3300017999\|Ga0187767_10154531	All Organisms → cellular organisms → Bacteria → Acidobacteria	690	Open in IMG/M
3300020199\|Ga0179592_10242473	Not Available	810	Open in IMG/M
3300020581\|Ga0210399_10261617	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300020581\|Ga0210399_10298592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1344	Open in IMG/M
3300021180\|Ga0210396_11161263	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300021181\|Ga0210388_10952609	Not Available	738	Open in IMG/M
3300021401\|Ga0210393_10058240	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3041	Open in IMG/M
3300021402\|Ga0210385_10749026	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300021405\|Ga0210387_11073250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300021405\|Ga0210387_11468938	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300021406\|Ga0210386_10336357	Not Available	1297	Open in IMG/M
3300021420\|Ga0210394_10300069	Not Available	1409	Open in IMG/M
3300021478\|Ga0210402_10963154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300021560\|Ga0126371_13932435	Not Available	500	Open in IMG/M
3300026490\|Ga0257153_1102752	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300026909\|Ga0207858_1021251	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300027825\|Ga0209039_10151174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	966	Open in IMG/M
3300027829\|Ga0209773_10111975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1130	Open in IMG/M
3300028072\|Ga0247675_1041914	Not Available	675	Open in IMG/M
3300028379\|Ga0268266_10691209	Not Available	983	Open in IMG/M
3300028906\|Ga0308309_10281559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1401	Open in IMG/M
3300031128\|Ga0170823_11692248	Not Available	734	Open in IMG/M
3300031231\|Ga0170824_112826295	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300031474\|Ga0170818_110911985	All Organisms → cellular organisms → Bacteria	1173	Open in IMG/M
3300031474\|Ga0170818_112962533	Not Available	556	Open in IMG/M
3300031744\|Ga0306918_10297892	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300031744\|Ga0306918_10976323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	658	Open in IMG/M
3300031744\|Ga0306918_11100458	Not Available	615	Open in IMG/M
3300031823\|Ga0307478_10183633	All Organisms → cellular organisms → Bacteria	1676	Open in IMG/M
3300031823\|Ga0307478_10376850	Not Available	1172	Open in IMG/M
3300031833\|Ga0310917_10884923	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300031879\|Ga0306919_11392411	Not Available	529	Open in IMG/M
3300031910\|Ga0306923_11395177	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300031910\|Ga0306923_11569837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	685	Open in IMG/M
3300031910\|Ga0306923_11596435	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300031912\|Ga0306921_10009600	All Organisms → cellular organisms → Bacteria → Acidobacteria	10271	Open in IMG/M
3300031912\|Ga0306921_11258089	Not Available	821	Open in IMG/M
3300031912\|Ga0306921_12067424	Not Available	604	Open in IMG/M
3300031941\|Ga0310912_10091135	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2229	Open in IMG/M
3300031941\|Ga0310912_10902165	Not Available	680	Open in IMG/M
3300031942\|Ga0310916_11282099	Not Available	603	Open in IMG/M
3300031946\|Ga0310910_11015423	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300031954\|Ga0306926_10078808	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4003	Open in IMG/M
3300031954\|Ga0306926_10395319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1706	Open in IMG/M
3300032160\|Ga0311301_11981700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	681	Open in IMG/M
3300032180\|Ga0307471_103114451	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	588	Open in IMG/M
3300032261\|Ga0306920_102846432	Not Available	657	Open in IMG/M
3300032783\|Ga0335079_10405176	All Organisms → cellular organisms → Bacteria → Acidobacteria	1470	Open in IMG/M
3300032892\|Ga0335081_11685048	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	692	Open in IMG/M
3300032893\|Ga0335069_10121254	All Organisms → cellular organisms → Bacteria → Acidobacteria	3275	Open in IMG/M
3300032897\|Ga0335071_10707120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300032897\|Ga0335071_11803350	Not Available	556	Open in IMG/M
3300033134\|Ga0335073_10408765	All Organisms → cellular organisms → Bacteria	1584	Open in IMG/M
3300033289\|Ga0310914_10130203	All Organisms → cellular organisms → Bacteria	2200	Open in IMG/M
3300033289\|Ga0310914_11703925	Not Available	534	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Host-Associated	Host-Associated	1.87%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.78%
Aquatic	Environmental → Aquatic	8.41%
Plants	Host-Associated → Plants	1.87%
Modeled	Engineered → Modeled	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.78%
Freshwater	Environmental → Aquatic → Freshwater	8.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.03%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.43%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028072	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK16	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0929.00006440	2166559005	Simulated	TDPDKIWKTADSNIKSAFKRYPPSPKDIEAKKQQWAKEDAAKKSSQP
INPhiseqgaiiFebDRAFT_1015901822	3300000364	Soil	DPDKIWKTADRNIKKAFRSYPPTAKAIQEKKAEWAKVDAAKKSAQP*
JGI25617J43924_103075172	3300002914	Grasslands Soil	IWKTADSNIKKAFRSYPPTAKAIEEKKAEWAKIDAAKKSAQP*
Ga0062388_1002575421	3300004635	Bog Forest Soil	PDKIWKSVDSSIKKAFKAYRPSPEAIAAKKQQWAKEDAATNMK*
Ga0066388_1047237731	3300005332	Tropical Forest Soil	NDPNKIWKTADSDIINVFKSYPPKAKAIEEKKAGCAKIDAAKEPAQP*
Ga0070714_1000669911	3300005435	Agricultural Soil	DPDKIWKTADSNIVKAFKLYPPTVKAIEEKKAERAKIDAAQKPPQR*
Ga0070686_1001040703	3300005544	Switchgrass Rhizosphere	TDPDKIWKTADSNIKNAFKRYPPSPKEIEEKKQQWAKEDAAKKPCQPQQ*
Ga0070695_1007011642	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	QTDPDKIWKTADSNIKNAFKRYPPSSKDIEAKKQQWAKEDASKKSSQP*
Ga0070762_104618072	3300005602	Soil	HTDPEKIWKTADSNIKNAFKRYPPSPKEIEEKKQQWVEEDAAKKPSQPQ*
Ga0066903_1038847213	3300005764	Tropical Forest Soil	HNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMGATKKSAQP*
Ga0070716_1001467142	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LIHSDSAKIWKTADSNIKNAFKSYPPSPKAVEAKKQQWAKEDAAKKSSQP*
Ga0099795_105746411	3300007788	Vadose Zone Soil	SNIKNAFKRYPPSPKDIEAKKQQWAKEDADKKSSQP*
Ga0126380_119233022	3300010043	Tropical Forest Soil	SERIIHNDPDKVWNTADKNILKAFKSYPPTAKAIDEKKAQWAKIDAAKKSAQP*
Ga0126384_102412311	3300010046	Tropical Forest Soil	IHNDPDKIWKTADKNIIKAFKSYPPTAKAIEEKKAEWAKMGATKKSAQP*
Ga0126373_107966542	3300010048	Tropical Forest Soil	EKIIHNDPDKIWKTADKNILKAFKSYPPTAKAIEEKKAEWAKIDAGKNSAQH*
Ga0126373_125359851	3300010048	Tropical Forest Soil	ADNNIRNAFKSYPPSAKDIEAKKQQWSKEDADKNSSSAPR*
Ga0126373_130014342	3300010048	Tropical Forest Soil	VSEKIIHNDPDKIWKTADKNIIKAFKSFPPTAKAIEEKKAEWAKMDAAKKPAHP*
Ga0126370_116093571	3300010358	Tropical Forest Soil	ADSNIIKAFKSYPPTAKAIQEKKAEWAKIDAAKKPAQP*
Ga0126376_123649161	3300010359	Tropical Forest Soil	DPDKIWKTADSNIKNAFKSYPPTAKAIEAKKAERARTDAAK*
Ga0126372_119711392	3300010360	Tropical Forest Soil	KIWKTADSNIRNAFKSYPPSAKDIEAKKQQWSKEDADNKSSSAPR*
Ga0126381_1010308562	3300010376	Tropical Forest Soil	PDKIWKTADNNIRNAFKSYPPSAKDIEAKKQQWSKEDADKKSSSAPR*
Ga0126381_1013140791	3300010376	Tropical Forest Soil	DKIWKSVDSSIKKGFKAYQPSPEAIGAKKQQWAKEDAEKKPA*
Ga0126381_1023802691	3300010376	Tropical Forest Soil	IWKIADSNIIKGFKSYPPTAKAIKEKKAEWAKIDAAKKPAQP*
Ga0126383_136236531	3300010398	Tropical Forest Soil	WRLFVSEKIIHSDPDKIWKTADSGIKKGFKSYPPSPKAIEEKKAEWAKTDPGKMPAQPN*
Ga0134122_106450971	3300010400	Terrestrial Soil	TDPDKIWKAAASNIKNAFKRYPPSPNDIEVKKQQRAREDASKKSSQPQ*
Ga0124844_11984482	3300010868	Tropical Forest Soil	PDKIWNTADKNILKAFKSYPPTAKAIDEKKAQWAKIDATKKSSQP*
Ga0124844_13096701	3300010868	Tropical Forest Soil	RQNLEHCRYKNILKAFKSYPPTAKAIDEKKAQWAKIDATKKSSQP*
Ga0137363_103936452	3300012202	Vadose Zone Soil	NIKNAFSRYPPSPKDIDAKKQQWAKEDAAKESSQPQ*
Ga0137363_108300521	3300012202	Vadose Zone Soil	NSNPDKIWKTADSNIKNAFGRYPPSPKDIDAKKQQWAKEDAARKSSQPQ*
Ga0137399_107160771	3300012203	Vadose Zone Soil	TNSNPDKIWKTADSNIKNAFGRYPPSPKDIDAKKQQWAKEDTAKKSSEPQ*
Ga0137396_109243391	3300012918	Vadose Zone Soil	NPDKIWKTADSNIKNAFGRYPPSPKDIDAKKQQWAKEDAAKESSQH*
Ga0137394_115239852	3300012922	Vadose Zone Soil	KNAFKRFPPSPKDIEEKKQQWAKEDAAKKPSQPQ*
Ga0137419_116203971	3300012925	Vadose Zone Soil	KIWKTADSNIKNAFSRYPPSPKDIDAKKQQWAKEDAAKESSQRY*
Ga0126375_105296242	3300012948	Tropical Forest Soil	EKIIHNDPDKIWKTAESNIIKAFKSYPPTAKAIEEKKAERAKIDAARKPSQP*
Ga0181523_100075701	3300014165	Bog	KIWKTADKNIIKAFKNYPPTAQAIKEKKAEWDKKEAAKKSAQP*
Ga0181526_103392762	3300014200	Bog	WKTADKNIIKAFKNYPPTAQAIKEKKAEWDKKEAAKKSAQP*
Ga0132255_1044702781	3300015374	Arabidopsis Rhizosphere	DKIWKTADDNIVKAFKRYPPTAKAIEEKKAERVKMDAKKSAQP*
Ga0182036_107724052	3300016270	Soil	IIHNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0182036_116316941	3300016270	Soil	IIHNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKIDATKKSVQP
Ga0182041_117167701	3300016294	Soil	DPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0182033_117548482	3300016319	Soil	NDPDKIWKTADSNIIKAFKSYPPTAKAIEEKKAEWAKIDAAKKPAQP
Ga0182033_119290351	3300016319	Soil	IHNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0182035_111251262	3300016341	Soil	WKTADSNIIKAFKSYPPTAKSIEEKKAEWAKIDAAKKPGQP
Ga0182035_115932681	3300016341	Soil	DKIWKTADKNIIKAFKSYPPTPKAIEEKKAERAKIDAAKKPAQP
Ga0182032_119469881	3300016357	Soil	KTADSNIKKAFKSYPPAAKAIEEKKAEWAKMGATKKSAQP
Ga0182039_111334171	3300016422	Soil	IWKTADKNILKAFKSYPPTAKAIEEKKAEWAKIDAGKNSAQH
Ga0182039_119587662	3300016422	Soil	PDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0181511_13143872	3300016702	Peatland	DKNIIKAFKNYPPTAQAIKEKKEEWAKKEAAKKSAQP
Ga0181505_104536332	3300016750	Peatland	WKTADKNIIKAFKNYPPTAQAIKEKKAEWDKKEAAKKSAQP
Ga0187803_102500161	3300017934	Freshwater Sediment	PDKIWKTAEKNIIQAFKNYPPTAEAIEEKKAEWAKIEAAKKSAQP
Ga0187809_101308611	3300017937	Freshwater Sediment	NIIKAFKNYPPTAEAIEEKKAEWAKIEAAKKSAQP
Ga0187777_103223401	3300017974	Tropical Peatland	NIKKAFRSYPPTAKAIEEKKAEWARIDASKKSAQP
Ga0187767_101545313	3300017999	Tropical Peatland	IHNDPDKIWKTADRNIKNAFKSYPPTAKAIEEKKAQWAKMDATKNASQP
Ga0179592_102424732	3300020199	Vadose Zone Soil	DKIWKTADSNIKNAFGRYPPSPKDIDAKKQQWAKEDAAKKSSEPQ
Ga0210399_102616172	3300020581	Soil	DSNIKSAFKRYPPSPKDIDAKKKQWAKEDTLKTQSQP
Ga0210399_102985923	3300020581	Soil	WRLFVSEKIIHNDPDKIWKTADSNIIKAFKNYPPTAGAIEEKKAAWAKAEAAKKSAQP
Ga0210396_111612631	3300021180	Soil	TADTNIIKAFKNYPPTPGAIEKKKAERAKIDAAKKSAQP
Ga0210388_109526092	3300021181	Soil	DKIWKTADSNIVKAFKRYPPTAEAIEEKKAERAKIDAAKKPPQR
Ga0210393_100582401	3300021401	Soil	SAKIWKTADSNIKDAFKSYPPSPKAVEAKKQQWAKEDAAKKPS
Ga0210385_107490262	3300021402	Soil	KIWKTADANIIKAYKSYPPTADAIEKKKAEWAKIDATKKPAQP
Ga0210387_110732502	3300021405	Soil	NDPDKIWKTADSNIIKAFKNYPPTAIAIEEKKAAWAKAEAAKKSGQP
Ga0210387_114689383	3300021405	Soil	PDKIWKTADSNIIKAFKSYPPTAKAIEEKKAEWAKIDAAKKSARP
Ga0210386_103363573	3300021406	Soil	IWKTADSNIKDAFKNYPPSPKAIEEKKEQWAKEDSAKNSPQP
Ga0210394_103000693	3300021420	Soil	IWKTADSNIVKAFKLYPPTAKAIEEKKAERAKIDAAKKPPQR
Ga0210402_109631541	3300021478	Soil	QKIWKIADGNIKNGFKRFPPSPKDIEAKEQQWAKEDAAKKPSQP
Ga0126371_139324351	3300021560	Tropical Forest Soil	DSNIKKAFKSYPPAAKAIEEKKAEWAKMHATKKSAQP
Ga0257153_11027521	3300026490	Soil	TDPDKIWKTADSNIKNAFKRFPPSAKDIAEKKQQWAKEDAAKKPAEPQ
Ga0207858_10212511	3300026909	Tropical Forest Soil	WKTADKNIIKAFKSYPPTAKDIEEKKAERAKADAAKKSAQP
Ga0209039_101511742	3300027825	Bog Forest Soil	ADNNIKDAFKRFPPSAKDIAAKKQQWAKEDATKKSGKP
Ga0209773_101119751	3300027829	Bog Forest Soil	DKIWKSVDSSIKKAFKAYRPSPEAIAAKKQQWAKEDAATNMK
Ga0247675_10419141	3300028072	Soil	NIIKAFKNYPPTARAIAEKKAAWARTEAAKKSAQP
Ga0268266_106912091	3300028379	Switchgrass Rhizosphere	WKTADSNIKNAFKRYPPSSKDIEAKKQQWAKEDASKKSSQP
Ga0308309_102815591	3300028906	Soil	DKIWKTADSNIVKAFKLYPPTAKAIEEKKAERAKIDAAKKPPQR
Ga0170823_116922481	3300031128	Forest Soil	ADSNIKNAFKRYPPSPKEIEEKKQQWAKEDAAKKPSQPQ
Ga0170824_1128262953	3300031231	Forest Soil	HTDPDKIWKTADSNIKNAFKRFPPSPKDIEEKKQQWAKEDAAKKPSQPQ
Ga0170818_1109119851	3300031474	Forest Soil	KIWKTADSNIKNAFKSYPPSPKAVEAKKHQWAKEDAAKKPS
Ga0170818_1129625331	3300031474	Forest Soil	IHSDSAKIWKTADSNIKNAFKSYPPSPKDIEAKKQQWAKEDAAKKPSQP
Ga0306918_102978924	3300031744	Soil	IHNDPDKIWKTADKNILKAFKSYPPTAKAIEEKKAERVKIDAGKNSAQH
Ga0306918_109763231	3300031744	Soil	NIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0306918_111004582	3300031744	Soil	TADSNIKKAFKSYPPAAKAIEEKKAEWAKIDATKKSVQP
Ga0307478_101836333	3300031823	Hardwood Forest Soil	TEPDKIWKTADSNIKNAFKRYPPSPKEIEEKKQQWAKDDAAKKPSQPQ
Ga0307478_103768502	3300031823	Hardwood Forest Soil	LFVSEKIIHNDPDKIWKTAEKNIIKAFKNYPPTAEAIEEKKAEWAKIEAAKKPGQP
Ga0310917_108849231	3300031833	Soil	DKIWKTADSNIKNAFKRYPPSPKDIEVKKQQWAKEDAAEKSSQHQ
Ga0306919_113924112	3300031879	Soil	TADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0306923_113951771	3300031910	Soil	NIKKAFKSYPPTAKAIEEKKLEWAKIDATKKSAQP
Ga0306923_115698371	3300031910	Soil	NDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKIDATKKSVQP
Ga0306923_115964352	3300031910	Soil	HNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0306921_1000960014	3300031912	Soil	KIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKIDATKKSVQP
Ga0306921_112580892	3300031912	Soil	VSEKIIHNDPDKIWKTADSNIIKAFKSYPPTAKSIEEKKAEWAKIDAAKKPGQP
Ga0306921_120674242	3300031912	Soil	TADSNIKKAFKSYPPAAKAIEEKKAEWAKMGATKKSAQP
Ga0310912_100911351	3300031941	Soil	DKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKIDATKKSVQP
Ga0310912_109021653	3300031941	Soil	VDSSIKKGFKAYQPSPEAIAAKKQQWAKEDAAANMK
Ga0310916_112820991	3300031942	Soil	DKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMGATKKSAQP
Ga0310910_110154231	3300031946	Soil	IQTDPDKIWKTADSNIKNAFKRYPPSPKDIEVKKQQWAKEDAAEKSSQHQ
Ga0306926_100788087	3300031954	Soil	KIIHNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKIDATKKSVQP
Ga0306926_103953191	3300031954	Soil	KIIHNDPDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMDATKKSAQP
Ga0311301_119817001	3300032160	Peatlands Soil	DPDKIWKTADSNIKKAFRSYPPTAKAIEEKKAEWAKIDAAKKSAQP
Ga0307471_1031144512	3300032180	Hardwood Forest Soil	ADSNIKNAFKSYPPSPKAVEAKKQQWAKEDAAKKSSQP
Ga0306920_1028464322	3300032261	Soil	PDKIWKTADSNIKKAFKSYPPAAKAIEEKKAEWAKMGATKKSAQP
Ga0335079_104051761	3300032783	Soil	EKSIVKAFKFYPPTQRAMEEKKAEWAKAEAAKKPAQP
Ga0335081_116850481	3300032892	Soil	ADSNIIKAFKNFPPTAKAIEEKKAEWAKIDAAKKPAQP
Ga0335069_101212541	3300032893	Soil	NIKNAFKSYPPTAKAIEEKKAQWAKMGATKNSAQP
Ga0335071_107071201	3300032897	Soil	PNKIWKTADSNITKAFKSYPPTPKAIEEKKAEWAKIDAAQGPAKP
Ga0335071_118033502	3300032897	Soil	DPNKIWKTADDNIKKGFKSYPPMARAIEEKKAEWAKMDAAKQPVQP
Ga0335073_104087653	3300033134	Soil	WKTADSNITKAFKSYPPTPKAIEEKKAEWAKIDAAQGPAKP
Ga0310914_101302032	3300033289	Soil	VSEKIIHNDPDKIWKTADSDIIKAFKSYPPTAKAIEEKKAEWAKIDAAKKPE
Ga0310914_117039251	3300033289	Soil	IIHSDPDKIWKTADKNIVKAFNSYPPTAKAVEEKKAERAKIDATKKPAQP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092627

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences