Metagenome Family F092643

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092643
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPEQ
Number of Associated Samples	74
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	79.44 %
% of genes near scaffold ends (potentially truncated)	28.97 %
% of genes from short scaffolds (< 2000 bps)	97.20 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.009 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.514 % of family members)
Environment Ontology (ENVO)	Unclassified (46.729 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.879 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.79% β-sheet: 0.00% Coil/Unstructured: 58.21%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07007	LprI	10.28
PF00873	ACR_tran	6.54
PF07080	DUF1348	5.61
PF03729	DUF308	2.80
PF01266	DAO	2.80
PF01758	SBF	0.93
PF04392	ABC_sub_bind	0.93
PF03592	Terminase_2	0.93
PF03992	ABM	0.93
PF08881	CVNH	0.93
PF03061	4HBT	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3755	Uncharacterized conserved protein YecT, DUF1311 family	Function unknown [S]	10.28
COG3558	Uncharacterized conserved protein, nuclear transport factor 2 (NTF2) superfamily	Function unknown [S]	5.61
COG3247	Acid resistance membrane protein HdeD, DUF308 family	General function prediction only [R]	2.80
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
All Organisms	root	All Organisms	42.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
cellular organisms	root	All Organisms → cellular organisms	42.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.45 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.64 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.87 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.15 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.28 %
Patescibacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group	1.87 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.28 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	6.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.80 %
Parcubacteria group	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group	1.87 %
Amorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.28 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	6.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Candidatus Parcubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria	1.87 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.93 %
Acuticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	0.93 %
Magnetospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum	0.93 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.28 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	6.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
unclassified Parcubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria	1.87 %
unclassified Ruegeria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria	0.93 %
Magnetospirillum gryphiswaldense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense	0.93 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.93 %
Acuticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.01 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.28 %
Methylobacterium sp. 17Sr1-1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	6.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Candidatus Parcubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	1.87 %
Magnetospirillum gryphiswaldense MSR-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense → Magnetospirillum gryphiswaldense MSR-1	0.93 %
Ruegeria sp. ANG-S4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria → Ruegeria sp. ANG-S4	0.93 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.93 %
Acuticoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10023051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2204	Open in IMG/M
3300004080\|Ga0062385_10499598	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300005435\|Ga0070714_101538495	Not Available	650	Open in IMG/M
3300005436\|Ga0070713_100725929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	949	Open in IMG/M
3300005437\|Ga0070710_10434145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	887	Open in IMG/M
3300005439\|Ga0070711_100387205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1132	Open in IMG/M
3300005610\|Ga0070763_10547974	Not Available	666	Open in IMG/M
3300005764\|Ga0066903_102737022	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005764\|Ga0066903_106027885	Not Available	635	Open in IMG/M
3300006172\|Ga0075018_10687105	Not Available	552	Open in IMG/M
3300006175\|Ga0070712_100405775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1126	Open in IMG/M
3300009792\|Ga0126374_10385022	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300009792\|Ga0126374_10847683	Not Available	703	Open in IMG/M
3300010046\|Ga0126384_11590174	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300010048\|Ga0126373_10422949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense → Magnetospirillum gryphiswaldense MSR-1	1361	Open in IMG/M
3300010048\|Ga0126373_11053051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	879	Open in IMG/M
3300010048\|Ga0126373_11461254	Not Available	749	Open in IMG/M
3300010358\|Ga0126370_11457380	Not Available	649	Open in IMG/M
3300010360\|Ga0126372_10838103	Not Available	915	Open in IMG/M
3300010360\|Ga0126372_12048661	Not Available	620	Open in IMG/M
3300010361\|Ga0126378_11340694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	809	Open in IMG/M
3300010366\|Ga0126379_10447860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1352	Open in IMG/M
3300010369\|Ga0136643_10524608	Not Available	789	Open in IMG/M
3300010376\|Ga0126381_100596421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1571	Open in IMG/M
3300010376\|Ga0126381_100672128	Not Available	1479	Open in IMG/M
3300010376\|Ga0126381_100746220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1403	Open in IMG/M
3300010376\|Ga0126381_101511188	Not Available	970	Open in IMG/M
3300010398\|Ga0126383_13508868	Not Available	512	Open in IMG/M
3300011120\|Ga0150983_13916456	Not Available	505	Open in IMG/M
3300012971\|Ga0126369_10634954	Not Available	1141	Open in IMG/M
3300012971\|Ga0126369_10987973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300012971\|Ga0126369_11296448	Not Available	818	Open in IMG/M
3300012971\|Ga0126369_12138956	Not Available	647	Open in IMG/M
3300015371\|Ga0132258_10735019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2486	Open in IMG/M
3300016357\|Ga0182032_11680412	Not Available	553	Open in IMG/M
3300016371\|Ga0182034_12084630	Not Available	500	Open in IMG/M
3300016387\|Ga0182040_10051049	Not Available	2574	Open in IMG/M
3300016404\|Ga0182037_11370640	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	625	Open in IMG/M
3300016404\|Ga0182037_11943804	Not Available	527	Open in IMG/M
3300016422\|Ga0182039_10481856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1068	Open in IMG/M
3300016422\|Ga0182039_12015951	Not Available	531	Open in IMG/M
3300017942\|Ga0187808_10366096	Not Available	656	Open in IMG/M
3300020580\|Ga0210403_10572381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Amorphaceae → Acuticoccus	914	Open in IMG/M
3300020581\|Ga0210399_10358738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	1217	Open in IMG/M
3300020581\|Ga0210399_11205048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	601	Open in IMG/M
3300020581\|Ga0210399_11529402	Not Available	517	Open in IMG/M
3300021178\|Ga0210408_11429369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300021358\|Ga0213873_10069952	Not Available	965	Open in IMG/M
3300021403\|Ga0210397_10917820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300021405\|Ga0210387_11649095	Not Available	544	Open in IMG/M
3300021407\|Ga0210383_11569486	Not Available	542	Open in IMG/M
3300021432\|Ga0210384_10814447	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300021479\|Ga0210410_11082307	Not Available	692	Open in IMG/M
3300021560\|Ga0126371_10468675	Not Available	1406	Open in IMG/M
3300021560\|Ga0126371_11274293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	869	Open in IMG/M
3300021560\|Ga0126371_13382303	Not Available	539	Open in IMG/M
3300025915\|Ga0207693_10446073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1011	Open in IMG/M
3300025915\|Ga0207693_10479773	All Organisms → cellular organisms → Bacteria → Proteobacteria	971	Open in IMG/M
3300026999\|Ga0207949_1002510	All Organisms → cellular organisms → Bacteria → Proteobacteria	1589	Open in IMG/M
3300028047\|Ga0209526_10452553	Not Available	844	Open in IMG/M
3300031231\|Ga0170824_116822316	Not Available	506	Open in IMG/M
3300031545\|Ga0318541_10117621	Not Available	1440	Open in IMG/M
3300031573\|Ga0310915_10804766	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Parcubacteria → unclassified Parcubacteria → Candidatus Parcubacteria bacterium	661	Open in IMG/M
3300031640\|Ga0318555_10313563	Not Available	849	Open in IMG/M
3300031668\|Ga0318542_10633577	Not Available	558	Open in IMG/M
3300031668\|Ga0318542_10678762	Not Available	538	Open in IMG/M
3300031679\|Ga0318561_10115133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1425	Open in IMG/M
3300031681\|Ga0318572_10626515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	641	Open in IMG/M
3300031681\|Ga0318572_10890556	Not Available	529	Open in IMG/M
3300031719\|Ga0306917_11509239	Not Available	517	Open in IMG/M
3300031724\|Ga0318500_10554234	Not Available	580	Open in IMG/M
3300031744\|Ga0306918_10594887	Not Available	867	Open in IMG/M
3300031753\|Ga0307477_10252219	Not Available	1223	Open in IMG/M
3300031754\|Ga0307475_11494857	Not Available	518	Open in IMG/M
3300031770\|Ga0318521_10658736	Not Available	635	Open in IMG/M
3300031771\|Ga0318546_10522556	Not Available	833	Open in IMG/M
3300031771\|Ga0318546_10654699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	739	Open in IMG/M
3300031771\|Ga0318546_11083667	Not Available	563	Open in IMG/M
3300031781\|Ga0318547_10514348	Not Available	740	Open in IMG/M
3300031781\|Ga0318547_10883612	Not Available	558	Open in IMG/M
3300031860\|Ga0318495_10516240	Not Available	521	Open in IMG/M
3300031890\|Ga0306925_10231231	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria → Ruegeria sp. ANG-S4	1994	Open in IMG/M
3300031890\|Ga0306925_10251008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	1906	Open in IMG/M
3300031890\|Ga0306925_10652432	Not Available	1106	Open in IMG/M
3300031890\|Ga0306925_10698920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1061	Open in IMG/M
3300031890\|Ga0306925_11245618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	743	Open in IMG/M
3300031890\|Ga0306925_11911828	Not Available	564	Open in IMG/M
3300031896\|Ga0318551_10573804	Not Available	650	Open in IMG/M
3300031896\|Ga0318551_10597844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	636	Open in IMG/M
3300031910\|Ga0306923_10517235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	1348	Open in IMG/M
3300031912\|Ga0306921_10659194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1206	Open in IMG/M
3300031912\|Ga0306921_11252629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	823	Open in IMG/M
3300031942\|Ga0310916_11065416	Not Available	673	Open in IMG/M
3300031945\|Ga0310913_11005378	Not Available	584	Open in IMG/M
3300031947\|Ga0310909_10235531	Not Available	1527	Open in IMG/M
3300031947\|Ga0310909_11621665	Not Available	512	Open in IMG/M
3300031962\|Ga0307479_11995717	Not Available	529	Open in IMG/M
3300031981\|Ga0318531_10361948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	656	Open in IMG/M
3300032001\|Ga0306922_11383003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	708	Open in IMG/M
3300032001\|Ga0306922_11584588	Not Available	652	Open in IMG/M
3300032025\|Ga0318507_10127834	Not Available	1076	Open in IMG/M
3300032055\|Ga0318575_10663841	Not Available	528	Open in IMG/M
3300032059\|Ga0318533_10295797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300032060\|Ga0318505_10367882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	679	Open in IMG/M
3300032065\|Ga0318513_10154599	Not Available	1096	Open in IMG/M
3300032261\|Ga0306920_103510991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. 17Sr1-1	579	Open in IMG/M
3300032261\|Ga0306920_103875725	Not Available	546	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Host-Associated	Host-Associated	2.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.39%
Aquatic	Environmental → Aquatic	2.80%
Plants	Host-Associated → Plants	1.87%
Arthropoda	Host-Associated → Arthropoda	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.39%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Sediment	Environmental → Aquatic → Sediment	0.93%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.31%
Loam	Environmental → Terrestrial → Soil → Loam	13.08%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	59.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.51%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.56%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.74%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010369	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 3)	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026999	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_100230514	3300003505	Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKTPEPEQ*
Ga0062385_104995982	3300004080	Bog Forest Soil	MSNFNHGLDLSHLAVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLNRKPPEPEQ*
Ga0070714_1015384952	3300005435	Agricultural Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPGQ*
Ga0070713_1007259291	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPEQ*
Ga0070710_104341452	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRNPPEPGQ*
Ga0070711_1003872051	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLNRKPPEPER*
Ga0070763_105479742	3300005610	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRKLPKSDE*
Ga0066903_1027370222	3300005764	Tropical Forest Soil	MEVEFVGWEFCVMSDLDHGLDLSHLTVWPHQPTTFAGIALIALAIFQPELAIPALVTGLVAIIGDDKTHLDRKPPEPEQ*
Ga0066903_1060278851	3300005764	Tropical Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPKQ*
Ga0075018_106871052	3300006172	Watersheds	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDR
Ga0070712_1004057752	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFDHGFDLLHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRNPPEPGQ*
Ga0126374_103850221	3300009792	Tropical Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAIIGDDKTHLDRKTPEPEQ*
Ga0126374_108476832	3300009792	Tropical Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEQ*
Ga0126384_115901742	3300010046	Tropical Forest Soil	MSNFDHGLDLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLNRKPQEPEQ*
Ga0126373_104229492	3300010048	Tropical Forest Soil	MSDLDHGLDLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLLAIIGDDKTHLNHKPPEPEQ*
Ga0126373_110530511	3300010048	Tropical Forest Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPEIAIPALVTGLVAIIGDDKTHLDRKPPEPEC*
Ga0126373_114612541	3300010048	Tropical Forest Soil	GLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDRTHLDRKPPSSEQ*
Ga0126370_114573802	3300010358	Tropical Forest Soil	DLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKLLEPEQ*
Ga0126372_108381031	3300010360	Tropical Forest Soil	MEVEFVGWEFCVMGNLDHGLDLSHLTVWPPQHTTLAGIALIALAIFQPELAIPALVTGLIAVIGDDKTHLDRKQSEPEQ*
Ga0126372_120486612	3300010360	Tropical Forest Soil	MEVISLNRKLKVVSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELDIPALVAGLVAIIGDDKTHLDRKTPEPEQ*
Ga0126378_113406942	3300010361	Tropical Forest Soil	LWPHRTLKVMSDLDHGLDLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLLAIIGDDKTHLNHKPPEPEQ*
Ga0126379_104478602	3300010366	Tropical Forest Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPEC*
Ga0136643_105246081	3300010369	Termite Gut	MSDFDHGLDLSHLTVWPPQPTTLAGIALIALAIFQPELAIPALVTGLIAIIGDDKTHLNRKLPEPEE*
Ga0126381_1005964213	3300010376	Tropical Forest Soil	VSDFDHGLDLSHLTVWPPQPTTLAGVGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRQPPEPEE*
Ga0126381_1006721281	3300010376	Tropical Forest Soil	EIRRIGVSTIMSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDRTHLDRKPPSPEQ*
Ga0126381_1007462201	3300010376	Tropical Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRKPPEPDQ*
Ga0126381_1015111881	3300010376	Tropical Forest Soil	MEVISLNRKLKVVSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKLLEPEQ*
Ga0126383_135088681	3300010398	Tropical Forest Soil	DLSHLTVWPHQPTTFAGIALIALAIFQPELAIPALVTGLIAVIGDDKTHLDRKQSEPEQ*
Ga0150983_139164561	3300011120	Forest Soil	MSDFDHGLDLSHVTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRKLPKSDE*
Ga0126369_106349542	3300012971	Tropical Forest Soil	SYDGGEIRRIGVSTIMSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDRTHLDRKPPSSEQ*
Ga0126369_109879731	3300012971	Tropical Forest Soil	TLKVMSDLDHGLDLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLLAIIGDDKTHLNHKSPEPEQ*
Ga0126369_112964482	3300012971	Tropical Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLARIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEQ*
Ga0126369_121389561	3300012971	Tropical Forest Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPEIAIPALVTGLVAIIGDDKTHLDRKPPENPEE*
Ga0132258_107350194	3300015371	Arabidopsis Rhizosphere	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDP
Ga0182032_116804122	3300016357	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKRPEPEE
Ga0182034_120846301	3300016371	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRKPPEPEC
Ga0182040_100510492	3300016387	Soil	MSNFYHGHGLDLSHLVGWRPLPTTTAGLGLIALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPER
Ga0182037_113706402	3300016404	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDK
Ga0182037_119438041	3300016404	Soil	WAKAGSLKVMSNFDHGLDLSHLTVWPPQPTTIAGVGLIALAIFQPELAIPALVTGLVAIIGDDKSHLDRGPTEPK
Ga0182039_104818562	3300016422	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEQ
Ga0182039_120159511	3300016422	Soil	DLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRRPTEPKE
Ga0187808_103660963	3300017942	Freshwater Sediment	TINSDYRGILKVMSHVHHGLDLSHLTVWPPQPTTLAGIALIALAIFQPELAIPALVTGLVAIIGDDKTHLTRRTPNLDE
Ga0210403_105723812	3300020580	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRRLPKSDE
Ga0210399_103587383	3300020581	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRKLPKSDE
Ga0210399_112050481	3300020581	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGFGLIALAIFQPELAIPALVAGLVATIGDDKTHLDRKPPKPEQ
Ga0210399_115294022	3300020581	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAVFQPELAIPALVAGLVAIIGDDKTHLDRKPPEP
Ga0210408_114293692	3300021178	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPGQ
Ga0213873_100699522	3300021358	Rhizosphere	MSHIHHSLDLSHLTEWPPQLTTIAGIALVGLAMFQPELAIPALVTGLVAIIGDDKTHLPCGKPSLDE
Ga0210397_109178202	3300021403	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKTPEPEQ
Ga0210387_116490951	3300021405	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRRLPK
Ga0210383_115694861	3300021407	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKP
Ga0210384_108144472	3300021432	Soil	MSDFDHGLDLSHVTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRRLPKSDE
Ga0210410_110823071	3300021479	Soil	MSDFDHGLDLSHVTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRKLPKSDE
Ga0126371_104686752	3300021560	Tropical Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEQ
Ga0126371_112742932	3300021560	Tropical Forest Soil	MSDLDHGLDLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLLAIIGDDKTHLNHKSPEPEQ
Ga0126371_133823031	3300021560	Tropical Forest Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEC
Ga0207693_104460732	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLNRKPPEPER
Ga0207693_104797732	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSDFDHGFDLLHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRNPPEPGQ
Ga0207949_10025101	3300026999	Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLARIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKTPEPEQ
Ga0209526_104525532	3300028047	Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPEQEALVLGWSCPAPSQ
Ga0170824_1168223161	3300031231	Forest Soil	MEVRLWPTQSAKIMSDFDHGLDLSHVTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLIAIIGDDKTHLDRKVPKSDE
Ga0318541_101176213	3300031545	Soil	VISNFHHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPEQ
Ga0310915_108047662	3300031573	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKP
Ga0318555_103135632	3300031640	Soil	MSNFYHGHGLDLSHLVVWPPQPTTIAGVGLVALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPE
Ga0318542_106335771	3300031668	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGVGLIALAIFQPELAIPALVAGLVAIIGDDKTHLNSKLPKPEQ
Ga0318542_106787621	3300031668	Soil	VSKFDHGLNLSHLVVWPPQPTTIAGIGLITLAILQPELAIPALVAGLVAIIGDDKTHLDRRLPEPEQ
Ga0318561_101151332	3300031679	Soil	MSNFYHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAVIGDDKSHLNRKPPEPEQ
Ga0318572_106265151	3300031681	Soil	MQESKVMSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVTGLVAIIGDDKTHLHRRLPEPEQ
Ga0318572_108905561	3300031681	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALSIFQPELAIPALVAGLVAIIGDDKTHLDRKMPEPEQ
Ga0306917_115092391	3300031719	Soil	GHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAVIGDDKSHLNRKPPEPEQ
Ga0318500_105542342	3300031724	Soil	LGVISNFHHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAVIGDDKSHLNRKPPEPEQ
Ga0306918_105948872	3300031744	Soil	MSNLDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVDGQVANIGDDKTHLDRKTPEPEQ
Ga0307477_102522191	3300031753	Hardwood Forest Soil	RSLAVMSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKPP
Ga0307475_114948571	3300031754	Hardwood Forest Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLNRNPPEPGQ
Ga0318521_106587362	3300031770	Soil	VISNFHHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAVIGDDKSHLNRKPPEPEQ
Ga0318546_105225561	3300031771	Soil	HGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPEQ
Ga0318546_106546991	3300031771	Soil	DHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEQ
Ga0318546_110836671	3300031771	Soil	MSNLDHGLDLSHLTVWPPQPTTLAGIGLIALALFQPELAIPAIVTGLVAVIGDDKTHLNRKLPASEQ
Ga0318547_105143482	3300031781	Soil	MSNFYHGHGLDLSHLVVWPPQPTTIAGVGLVALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPER
Ga0318547_108836122	3300031781	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALALFQPELAIPAIVTGLVAVIGDDKTHLNRKLPASEQ
Ga0318495_105162401	3300031860	Soil	MSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAILQPELAIPALVAGLVAIIGDDKTHLDRKMPEPEQ
Ga0306925_102312313	3300031890	Soil	LSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPEQ
Ga0306925_102510082	3300031890	Soil	MSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVTGLVAILGDDKTHLHRRLPEPEQ
Ga0306925_106524321	3300031890	Soil	MSNFDHGLDLSHLTVWPPQPTTIAGVGLIALAIFQPELAIPALVTGLVAIIGDDKSHLDRGPTEPK
Ga0306925_106989202	3300031890	Soil	MSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAILQPELAIPALVAGLVAIIGDDKTHLDRRLPEPEQ
Ga0306925_112456182	3300031890	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKT
Ga0306925_119118281	3300031890	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAMFQPELAIPALVAGLVAIIGDDKTHLDRKPPEPEC
Ga0318551_105738042	3300031896	Soil	MSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVAGLVAIIGDDKTHLDRRVPEPEQ
Ga0318551_105978441	3300031896	Soil	MSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVTGLVAILGDDKT
Ga0306923_105172351	3300031910	Soil	MSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVTGLVAIIGDDKTHLHRRLPEPEQ
Ga0306921_106591942	3300031912	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKMPEPEQ
Ga0306921_112526292	3300031912	Soil	MSNFDHGLDLSHLTVWPPQPTTLAGIGLIALATFQPELAIPALVTGLVAIIGDDKTHLNRKLPESEQ
Ga0310916_110654162	3300031942	Soil	MSNFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVSGLVAIIGDDKTHLNRKLPESEQ
Ga0310913_110053782	3300031945	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKTPEPEQ
Ga0310909_102355311	3300031947	Soil	MSTIHHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAVIGDDKSHLNRKPPEPEQ
Ga0310909_116216652	3300031947	Soil	VISNFHHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPE
Ga0307479_119957171	3300031962	Hardwood Forest Soil	DLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKTPEPEQ
Ga0318531_103619482	3300031981	Soil	LDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLIAIIGDDKTHLDRKPPEPEQ
Ga0306922_113830031	3300032001	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRKP
Ga0306922_115845881	3300032001	Soil	MSNFDHGLDLSHLTVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRRPTEPKE
Ga0318507_101278341	3300032025	Soil	MSNFYHGHGLDLSHLVVWPPQPTTIAGVGLVALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPEQ
Ga0318575_106638412	3300032055	Soil	VSKFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVTGLVAIIGDDKTHLHRRLPEPEQ
Ga0318533_102957972	3300032059	Soil	MSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVAGLVAIIGDDKTHLDRKTQEPEQ
Ga0318505_103678822	3300032060	Soil	VSKFDHGLNLSHLVVWPPQPTTIAGIGLITLAILQPELAIPALVAGLVAIIGDDKTHLDRRLPEPE
Ga0318513_101545993	3300032065	Soil	MSNFYHGHGLDLSHLVVWPPQPTTIAGIGLIALAIFQPELAIPALVTGLVAIIGDDKSHLNRKPPEPEQ
Ga0306920_1035109911	3300032261	Soil	VSNFDHGLNLSHLVVWPPQPTTIAGIGLITLAIFQPELAIPALVAGLVAIIGDDKTHLD
Ga0306920_1038757251	3300032261	Soil	VSDFDHGLDLSHLTVWPPQPTTLAGIGLIALAIFQPELAIPALVTGLVAIIGDDKTHLDRKPPEPEC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092643

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences