Metagenome / Metatranscriptome Family F092795

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092795
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	75 residues
Representative Sequence	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Number of Associated Samples	81
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.96 %
% of genes near scaffold ends (potentially truncated)	31.78 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.271 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil (12.149 % of family members)
Environment Ontology (ENVO)	Unclassified (25.234 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.290 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.00% β-sheet: 18.67% Coil/Unstructured: 49.33%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00486	Trans_reg_C	4.67
PF00072	Response_reg	2.80
PF16363	GDP_Man_Dehyd	1.87
PF06186	DUF992	1.87
PF00754	F5_F8_type_C	0.93
PF00535	Glycos_transf_2	0.93
PF00202	Aminotran_3	0.93
PF00196	GerE	0.93
PF04932	Wzy_C	0.93
PF13469	Sulfotransfer_3	0.93
PF02518	HATPase_c	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3307	O-antigen ligase	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.21 %
Unclassified	root	N/A	45.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.21 %
Unclassified	root	N/A	45.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.27 %
Unclassified	root	N/A	45.79 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.35 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8.41 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.93 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.41 %
Perkinsozoa	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa	0.93 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.80 %
Rhodovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae	1.87 %
Perkinsea	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Tistlia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia	1.87 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.87 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.93 %
Perkinsida	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida	0.93 %
unclassified Verrucomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Tistlia consotensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis	1.87 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.87 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	0.93 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.93 %
Perkinsidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Tistlia consotensis USBA 355	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis → Tistlia consotensis USBA 355	1.87 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.87 %
Afipia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp.	0.93 %
Perkinsus	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus	0.93 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.79 %
Tistlia consotensis USBA 355	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis → Tistlia consotensis USBA 355	1.87 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1.87 %
Perkinsus marinus	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	0.93 %
Afipia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp.	0.93 %
Verrucomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2065487018\|GPINP_F5MS3JC02JCLX6	Not Available	523	Open in IMG/M
2067725002\|GPICC_F5MS3JC01C46SA	Not Available	526	Open in IMG/M
2140918013\|NODE_466737_length_1399_cov_5.509650	Not Available	1431	Open in IMG/M
2170459015\|G14TP7Y02G328S	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
2228664022\|INPgaii200_c0512090	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105615955	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105619784	Not Available	598	Open in IMG/M
3300000550\|F24TB_13397038	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → Perkinsus marinus	533	Open in IMG/M
3300000550\|F24TB_13773256	Not Available	569	Open in IMG/M
3300000955\|JGI1027J12803_105851840	Not Available	805	Open in IMG/M
3300000955\|JGI1027J12803_106733619	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300000956\|JGI10216J12902_108964247	Not Available	757	Open in IMG/M
3300004114\|Ga0062593_100574243	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300004114\|Ga0062593_101402252	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300004114\|Ga0062593_101618474	Not Available	704	Open in IMG/M
3300004114\|Ga0062593_103490208	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300004156\|Ga0062589_100128070	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300004156\|Ga0062589_101139503	Not Available	741	Open in IMG/M
3300004157\|Ga0062590_101340279	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300004157\|Ga0062590_101554803	Not Available	666	Open in IMG/M
3300004463\|Ga0063356_103728571	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300004479\|Ga0062595_100125444	All Organisms → cellular organisms → Bacteria	1432	Open in IMG/M
3300004479\|Ga0062595_100977363	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300004479\|Ga0062595_101038347	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300004479\|Ga0062595_101337836	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300004643\|Ga0062591_100102554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis → Tistlia consotensis USBA 355	1855	Open in IMG/M
3300005206\|Ga0068995_10109680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	570	Open in IMG/M
3300005332\|Ga0066388_101286394	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300005332\|Ga0066388_102170192	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300005332\|Ga0066388_105603513	Not Available	636	Open in IMG/M
3300005332\|Ga0066388_105985616	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300005332\|Ga0066388_107443903	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005337\|Ga0070682_102060785	Not Available	503	Open in IMG/M
3300005340\|Ga0070689_100965792	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300005353\|Ga0070669_101289801	Not Available	632	Open in IMG/M
3300005456\|Ga0070678_100298332	Not Available	1368	Open in IMG/M
3300005564\|Ga0070664_102272561	Not Available	515	Open in IMG/M
3300005578\|Ga0068854_101977138	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300005764\|Ga0066903_100984419	Not Available	1539	Open in IMG/M
3300005764\|Ga0066903_103461114	Not Available	851	Open in IMG/M
3300005764\|Ga0066903_104088595	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300005764\|Ga0066903_104396538	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300006163\|Ga0070715_10233978	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300006173\|Ga0070716_100682388	Not Available	783	Open in IMG/M
3300006175\|Ga0070712_101926701	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300006196\|Ga0075422_10252474	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300006806\|Ga0079220_10877207	Not Available	692	Open in IMG/M
3300006845\|Ga0075421_102800546	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006904\|Ga0075424_100337864	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300006954\|Ga0079219_10893299	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300006954\|Ga0079219_12314535	Not Available	520	Open in IMG/M
3300009094\|Ga0111539_10677063	Not Available	1201	Open in IMG/M
3300009098\|Ga0105245_11532678	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300009100\|Ga0075418_10620588	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300009148\|Ga0105243_10611148	Not Available	1051	Open in IMG/M
3300009553\|Ga0105249_12366454	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010043\|Ga0126380_10041267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp.	2423	Open in IMG/M
3300010048\|Ga0126373_12895958	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010358\|Ga0126370_10547795	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300010361\|Ga0126378_10044583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4088	Open in IMG/M
3300010371\|Ga0134125_10257436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodovibrionaceae → Tistlia → Tistlia consotensis → Tistlia consotensis USBA 355	1939	Open in IMG/M
3300010373\|Ga0134128_10151808	Not Available	2618	Open in IMG/M
3300010375\|Ga0105239_10085261	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → unclassified Verrucomicrobiales → Verrucomicrobiales bacterium	3481	Open in IMG/M
3300010375\|Ga0105239_11574045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	760	Open in IMG/M
3300010376\|Ga0126381_100021310	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7593	Open in IMG/M
3300010396\|Ga0134126_10264481	Not Available	2030	Open in IMG/M
3300010396\|Ga0134126_11229991	Not Available	831	Open in IMG/M
3300010396\|Ga0134126_11431409	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300010397\|Ga0134124_10209021	Not Available	1776	Open in IMG/M
3300010398\|Ga0126383_13094009	Not Available	543	Open in IMG/M
3300010403\|Ga0134123_10983896	Not Available	858	Open in IMG/M
3300012884\|Ga0157300_1115446	Not Available	512	Open in IMG/M
3300012897\|Ga0157285_10077980	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300012897\|Ga0157285_10181187	Not Available	649	Open in IMG/M
3300012903\|Ga0157289_10274557	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300012906\|Ga0157295_10179958	Not Available	658	Open in IMG/M
3300012911\|Ga0157301_10173080	Not Available	706	Open in IMG/M
3300012971\|Ga0126369_12623940	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300014325\|Ga0163163_10446428	Not Available	1353	Open in IMG/M
3300014745\|Ga0157377_11154781	Not Available	597	Open in IMG/M
3300014968\|Ga0157379_10509333	Not Available	1116	Open in IMG/M
3300015200\|Ga0173480_10516180	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300015374\|Ga0132255_102834082	Not Available	741	Open in IMG/M
3300016387\|Ga0182040_10375486	Not Available	1109	Open in IMG/M
3300016404\|Ga0182037_10978190	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300017974\|Ga0187777_10329920	Not Available	1046	Open in IMG/M
3300019356\|Ga0173481_10177831	Not Available	903	Open in IMG/M
3300019356\|Ga0173481_10245367	Not Available	803	Open in IMG/M
3300019356\|Ga0173481_10581931	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300019361\|Ga0173482_10032401	Not Available	1589	Open in IMG/M
3300021560\|Ga0126371_10362087	Not Available	1587	Open in IMG/M
3300021560\|Ga0126371_10460023	All Organisms → cellular organisms → Bacteria → Proteobacteria	1419	Open in IMG/M
3300025898\|Ga0207692_11220242	Not Available	500	Open in IMG/M
3300025927\|Ga0207687_11369796	Not Available	608	Open in IMG/M
3300025933\|Ga0207706_10131209	Not Available	2204	Open in IMG/M
3300026067\|Ga0207678_10107218	All Organisms → cellular organisms → Bacteria	2383	Open in IMG/M
3300026377\|Ga0257171_1093564	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300027907\|Ga0207428_10231819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	1382	Open in IMG/M
3300031573\|Ga0310915_10197862	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300031890\|Ga0306925_10875602	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300031910\|Ga0306923_10109860	All Organisms → cellular organisms → Bacteria	3120	Open in IMG/M
3300031954\|Ga0306926_10491628	Not Available	1509	Open in IMG/M
3300032001\|Ga0306922_10019538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6746	Open in IMG/M
3300032059\|Ga0318533_10111567	Not Available	1904	Open in IMG/M
3300033289\|Ga0310914_10944840	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300034667\|Ga0314792_166057	Not Available	599	Open in IMG/M
3300034817\|Ga0373948_0134498	Not Available	607	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.64%
Host-Associated	Host-Associated	22.43%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.70%
Plants	Host-Associated → Plants	22.43%
Aquatic	Environmental → Aquatic	0.93%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Marine	Environmental → Aquatic → Marine	0.93%
Roots	Host-Associated → Plants → Roots	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.88%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.23%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	14.95%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	12.15%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.28%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.41%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2065487018	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005206	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034667	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPINP_02827520	2065487018	Soil	GSIARVVISGDHMVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI
GPICC_03030220	2067725002	Soil	MVNLLDVEVWGSGIIVSLPGTNYWARYFKEKDSPGLLPTDIANKDDPRVTMTASEFLSKAWELATERARELGWVS
Iowa-Corn-GraphCirc_03823920	2140918013	Soil	MEVWGSGIIVSLPGTNYWARYFKEKDSPGLFPTDIANKDDPRVTMTASEFLSKAWELASERARELGWVS
4PV_00756000	2170459015	Switchgrass, Maize And Mischanthus Litter	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKNSRGLLPADIGNKDDPRVSMTAAEFLAKAWQLANERARELGWIT
INPgaii200_05120902	2228664022	Soil	MLHLLDVEVWGGGIIVTLPGTNYWVSYFKENDSSGLFAADIANRDDPRVTITANEFLEKAWKLANERARELGWVT
INPhiseqgaiiFebDRAFT_1056159551	3300000364	Soil	GIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLANERARELGWIT*
INPhiseqgaiiFebDRAFT_1056197842	3300000364	Soil	GIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
F24TB_133970381	3300000550	Soil	MVNLLDVEVWRSGIIVTLPGTNYWVTYFKEKESAGLFAADIANKDDPRVTMTAAEFLAKAWELANAKARELGWVL*
F24TB_137732562	3300000550	Soil	MVNLLDVEVWGSGIIVTLPGTSYWVRYFKEKDSPGLFPADIADKDDPRVTMTAAEFLSKAWETRQREG*
JGI1027J12803_1058518401	3300000955	Soil	MVNLLDVEVWGSGIIVSLPGTNYWARYFKEKDSPGLFPTDIANKDDPRVTMTASEFLSKAWELASERARELGWVS*
JGI1027J12803_1067336192	3300000955	Soil	MPMITLLDVEIWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVTMTANEFLAKAWKLANERARELGWVP*
JGI10216J12902_1089642471	3300000956	Soil	MVNLLDVEVWGSGIIVSLPGTNYWARYFKEKGSPGLLPADIANKDDPRVTMTASEFLSKAWELASERARELGWVS*
Ga0062593_1005742433	3300004114	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSAGLFPADIANKDDPRVAMTAAEFLAKAWKLANERARELGWVT*
Ga0062593_1014022522	3300004114	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSTGLFPADIANKDDPRVTMTANEFLVQAWKLANERARELGWVS*
Ga0062593_1016184741	3300004114	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0062593_1034902081	3300004114	Soil	MVNLLDVEVWGSAIIVTLPGTNYWVRYFKEEDSPGLFPADIANKDDPRVTMTASEFLAKAWNLANERARELGWVS*
Ga0062589_1001280702	3300004156	Soil	MITLLDVEIRGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVTMTANEFLAKAWKLANERARELGWVP*
Ga0062589_1011395031	3300004156	Soil	EEIDMVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0062590_1013402792	3300004157	Soil	MITLLDVEIWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVTMTANEFLAKAWKLANERARELGWVP*
Ga0062590_1015548032	3300004157	Soil	WCYLRMRGFEEIDMVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0063356_1037285712	3300004463	Arabidopsis Thaliana Rhizosphere	RTGGIDMVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESKGLFAADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT*
Ga0062595_1001254441	3300004479	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADTANKDDPRVTMTASEFLAKAWNLANERGR
Ga0062595_1009773631	3300004479	Soil	MVNLLDVEVWGSGIVVTLPGTNYFVRYFKENDLPGLFPADIANKDDPRVTMTASEFLAKAWQLANERARELGWIT*
Ga0062595_1010383472	3300004479	Soil	MVNLLDVEVWGSGIIITLPGTNYWVRYFKEADSPGLFPADIANKDDPRVTMTASEFLTKAWQLANERARELGWIT*
Ga0062595_1013378361	3300004479	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESKGLFAADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT*
Ga0062591_1001025542	3300004643	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIA*
Ga0068995_101096801	3300005206	Natural And Restored Wetlands	MVNLLDVEVWGTGIIVSLPGTRYWVRYFREQDSAGLFAADIARKDDPRVDMTAAEFLAKAWDLASERARDLGWVTSPPT*
Ga0066388_1012863942	3300005332	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANRDDPRVTMTAAEFLAKAWKLANERARELGWVT*
Ga0066388_1021701921	3300005332	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPALFPADIANKDDPRVTMTAAEFLAKAWNLANERARELGWVT*
Ga0066388_1056035132	3300005332	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKAWKLASERARELGWVT*
Ga0066388_1059856162	3300005332	Tropical Forest Soil	WGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKAWKLANDRAKELGWVT*
Ga0066388_1074439031	3300005332	Tropical Forest Soil	VEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFHADIANKDDPRVTMTAAEFLAKAWKPANERARELGWVT*
Ga0070682_1020607851	3300005337	Corn Rhizosphere	MVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWP
Ga0070689_1009657921	3300005340	Switchgrass Rhizosphere	MVNLLDVEVWGSGIIVTLTGTNYWVRYFKEDDSPGLSPADIANNDDPRITMTASEFLTKAWQLANERARELGWIE*
Ga0070669_1012898011	3300005353	Switchgrass Rhizosphere	LLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0070678_1002983323	3300005456	Miscanthus Rhizosphere	MVNLLDVEVWGGGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0070664_1022725611	3300005564	Corn Rhizosphere	GFEEIDMVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0068854_1019771381	3300005578	Corn Rhizosphere	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLANERARELGWIT*
Ga0066903_1009844192	3300005764	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANNDDPRVTMTASEFLARAWKLANERARELGWVT*
Ga0066903_1034611141	3300005764	Tropical Forest Soil	GGIIVTLPGTNYWVKYLKEKDSLGFFPADTTNKDDPRVAMTASEFLTKAWTLANERARELGWV*
Ga0066903_1040885952	3300005764	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT*
Ga0066903_1043965381	3300005764	Tropical Forest Soil	MLFHPKEPRGNRQLVDLLDVEVWGSGIIVTLPGTNYWVTFFKEEDSPGLFPADIANKDDPRVTMTAAEFLANAWKLANERARELGWVT*
Ga0070715_102339783	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VPFVNLLAVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVTFRLIRTE*
Ga0070716_1006823882	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AQLRVVISGDHMVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKVDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0070712_1019267011	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GIIVTLPGTNYWVTYFKEKDSAGLFPADIANKDDPRVAMTAAEFLAKAWKLANERARELGWVT*
Ga0075422_102524742	3300006196	Populus Rhizosphere	MVNLLDVEVWGSGIVVTLPGTNYFVRYFKENDLPGLFPADIANKDDPRVTMTASEFLGKAWQLANERARELGWIT*
Ga0079220_108772071	3300006806	Agricultural Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLLPADIANKDDPRVTMTAVEFLSKAWELASERARELGWVS*
Ga0075421_1028005461	3300006845	Populus Rhizosphere	MVNLLDVEVWGSAIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVTMTASEFLARAWNLANERARELGWVS*
Ga0075424_1003378642	3300006904	Populus Rhizosphere	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEDDSPGLSPADIANNDDPRITMTASEFLTKAWQLANERARELGWIE*
Ga0079219_108932992	3300006954	Agricultural Soil	DVEVWGSGIIVTLPGTNYWVRYFKEDDSPGLSPADIANNDDPRITMTASEFLTKAWQLANERARELGWIE*
Ga0079219_123145351	3300006954	Agricultural Soil	MVDLLDVEVWASGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRITMTAAEFLPKACKLANKKARELGWVDA*
Ga0111539_106770631	3300009094	Populus Rhizosphere	MVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELG
Ga0105245_115326782	3300009098	Miscanthus Rhizosphere	DHMVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0075418_106205881	3300009100	Populus Rhizosphere	DMVNLLDVEVWGSGIIVTLPGTNYWVRYFKEDDSPGLSPADIANNDDPRITMTASEFLTKAWQLANERARELGWIE*
Ga0105243_106111483	3300009148	Miscanthus Rhizosphere	GLATNPTREGGACQTKNRKLGSVARVVISGDHMVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0105249_123664541	3300009553	Switchgrass Rhizosphere	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKNSPGLFPVDTANKDDPRVTMTAAEFLARAWNLANERGRELGWVT*
Ga0126380_100412671	3300010043	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSEGLFPADIANKDDPRVAMTAAEFLAKAWKLANERARELGWVT*
Ga0126373_128959582	3300010048	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANNDDPRVTMMASEFLARAWKLANERARELGWVT*
Ga0126370_105477951	3300010358	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSAGLFPADIANKDDPRVAMTAAEFLAKAWKL
Ga0126378_100445831	3300010361	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSAGLFPADTANKDDPRVAMTAAEFLAKAWKLANERARELGWVT*
Ga0134125_102574361	3300010371	Terrestrial Soil	VWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0134128_101518081	3300010373	Terrestrial Soil	MVHLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0105239_100852615	3300010375	Corn Rhizosphere	MVNLLDVEVWESGITVTLPGTSYWATYIKQNGSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0105239_115740451	3300010375	Corn Rhizosphere	MVNLLDVEVWGSGIIVSLPGTNYWARYFKEKDSPGLLPADIANKDDPRVTMTASEFLSKAWELASERARELGWVS*
Ga0126381_1000213106	3300010376	Tropical Forest Soil	MVNLLDVGVWGSGIIVTLPGTNYWVTYFKEKDSAGLFPADIANKDDPRVAMTAAEFLAKAWKLANERARELGWVT*
Ga0134126_102644813	3300010396	Terrestrial Soil	LTWKCGVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0134126_112299911	3300010396	Terrestrial Soil	MVNLLDVEVWGSGIIVSLPGTNYWARYFKEKDSPGLLPADIANKDDPRVTMTASEFLSKAWELASERARELGWVSYSVLMMRQPP
Ga0134126_114314091	3300010396	Terrestrial Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSAGLFPADIANKDDPRVAMTAAEFLAKAWNLANERGRELGWVT*
Ga0134124_102090212	3300010397	Terrestrial Soil	MVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0126383_130940091	3300010398	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKACKLANERARELGWVA*
Ga0134123_109838961	3300010403	Terrestrial Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADVANKDDPRVTMTASEFLAKAWQLATERARELGWIT*
Ga0157300_11154462	3300012884	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVPMTANEFLVQAWKLANERAR
Ga0157285_100779802	3300012897	Soil	MVNLLDVEVWGSGITLPGTNYWVRYFKEKDSTGLFPADIANKDDPRVTMTANEFLVQAWKLANERARELGWVS*
Ga0157285_101811871	3300012897	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWI
Ga0157289_102745571	3300012903	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLGKAWQLANERARELGWIT*
Ga0157295_101799583	3300012906	Soil	MWNWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVTMTATEFLAKAWTLANERAR
Ga0157301_101730801	3300012911	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLA
Ga0126369_126239402	3300012971	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANNDDPRVTMTASEFLAKAWKLANERARELGWVT*
Ga0163163_104464284	3300014325	Switchgrass Rhizosphere	MINLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI*
Ga0157377_111547811	3300014745	Miscanthus Rhizosphere	MVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERATELGWLI*
Ga0157379_105093331	3300014968	Switchgrass Rhizosphere	LDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADTANKDDPRVTMTAAEFLAKAWNLANERGRELGWVT*
Ga0173480_105161802	3300015200	Soil	MRKGRAVNMVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANKDDPRVTMTANEFLAKAWKLANERARELGWVP*
Ga0132255_1028340822	3300015374	Arabidopsis Rhizosphere	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEDDSPGLSPADIANNDDPRITMTASEFLTKAWQ
Ga0182040_103754862	3300016387	Soil	MVNLLDVEVGGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0182037_109781901	3300016404	Soil	MVNLLDVEVWGSGIIVSLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0187777_103299201	3300017974	Tropical Peatland	MVYLLDVEVWGGGIIVTLPGTNYWARYFKEKDSPGLIPVDTTNKDDPRVNITANEFLAKAWQLAYERAREIGWVS
Ga0173481_101778312	3300019356	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT
Ga0173481_102453672	3300019356	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSTGLFPADIANKDDPRVPMTANEFLVQAWKLANERAR
Ga0173481_105819311	3300019356	Soil	MVDLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPVLFPADIANKDDPRVTMTAAEFLAKAWKLANEKARELGWVDGWRQ
Ga0173482_100324012	3300019361	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSTGLFPADIANKDDPRVTMTANEFLVQAWKLANERARELGWVS
Ga0126371_103620871	3300021560	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSAGLFPADIANKDDPRVAMTAAEFLAKAWKLANERARELGWVT
Ga0126371_104600231	3300021560	Tropical Forest Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKEKDSPGLFPADIANNDDPRVTMTASEFLARAWKLANERARELGWVT
Ga0207692_112202421	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GFEEIDMVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLATERARELGWIT
Ga0207687_113697961	3300025927	Miscanthus Rhizosphere	ARVVISGDHMVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI
Ga0207706_101312091	3300025933	Corn Rhizosphere	MVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKAWKLANERAMELGWPI
Ga0207678_101072181	3300026067	Corn Rhizosphere	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKENDLPGLFPADIANKDDPRVSMTCPDFLASAWRAANDRAKGLGWIA
Ga0257171_10935641	3300026377	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESPGLFAADAANKDDPRVTMTAAEFLAKAWKLANDRARELGWIT
Ga0207428_102318192	3300027907	Populus Rhizosphere	MVNLLDVEVWGSGIVVTLPGTNYFVRYFKENDLPGLFPADIANKDDPRVTMTASEFLGKAWQLANERARELGWIT
Ga0310915_101978622	3300031573	Soil	VAFGSHLQAYFDAIYIKARTAGEPDMVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0306925_108756021	3300031890	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKDSPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVTY
Ga0306923_101098603	3300031910	Soil	MVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0306926_104916281	3300031954	Soil	MVDLLDVEVWGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0306922_100195385	3300032001	Soil	MVNLLDVEVCGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0318533_101115671	3300032059	Soil	ARTAGEPDMVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVT
Ga0310914_109448401	3300033289	Soil	VAFGSHLQAYFDAIYIKARTAGEPDMVNLLDVEVWGSGIIVTLPGTNYWVTYFKEKESPGLFPADIANKDDPRVTMTAAEFLAKAWKLANERARELGWVTY
Ga0314792_166057_293_520	3300034667	Soil	MVNLLDVEVWESGITVTLPGTSYWATYIKQNDSSGLFARVIADKDDPRVGMTLLEFLDKPWKLANERATELGWLI
Ga0373948_0134498_2_196	3300034817	Rhizosphere Soil	MVNLLDVEVWGSGIIVTLPGTNYWVRYFKETDSPGLFPADIANKDDPRVTMTASEFLAKAWQLAT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092795

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences