Metagenome / Metatranscriptome Family F092932

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092932
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	68 residues
Representative Sequence	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.09 %
% of genes near scaffold ends (potentially truncated)	20.56 %
% of genes from short scaffolds (< 2000 bps)	66.36 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (80.374 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (30.841 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.075 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.95% β-sheet: 13.68% Coil/Unstructured: 67.37%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00313	CSD	9.35
PF13650	Asp_protease_2	7.48
PF07369	DUF1488	5.61
PF03461	TRCF	1.87
PF07505	DUF5131	1.87
PF09650	PHA_gran_rgn	1.87
PF04014	MazE_antitoxin	1.87
PF12867	DinB_2	1.87
PF13030	DUF3891	0.93
PF01555	N6_N4_Mtase	0.93
PF00731	AIRC	0.93
PF01979	Amidohydro_1	0.93
PF00696	AA_kinase	0.93
PF15919	HicB_lk_antitox	0.93
PF00697	PRAI	0.93
PF00535	Glycos_transf_2	0.93
PF04568	IATP	0.93
PF01435	Peptidase_M48	0.93
PF00392	GntR	0.93
PF13377	Peripla_BP_3	0.93
PF01467	CTP_transf_like	0.93
PF01408	GFO_IDH_MocA	0.93
PF13551	HTH_29	0.93
PF04015	DUF362	0.93
PF07642	BBP2	0.93
PF07589	PEP-CTERM	0.93
PF02452	PemK_toxin	0.93
PF10282	Lactonase	0.93
PF07963	N_methyl	0.93
PF01935	DUF87	0.93
PF02774	Semialdhyde_dhC	0.93
PF01230	HIT	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1197	Transcription-repair coupling factor (superfamily II helicase)	Transcription [K]	3.74
COG4422	Bacteriophage protein gp37	Mobilome: prophages, transposons [X]	1.87
COG0002	N-acetyl-gamma-glutamylphosphate reductase	Amino acid transport and metabolism [E]	0.93
COG0135	Phosphoribosylanthranilate isomerase	Amino acid transport and metabolism [E]	0.93
COG0136	Aspartate-semialdehyde dehydrogenase	Amino acid transport and metabolism [E]	0.93
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.93
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.93
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	0.93
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.93
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.31 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.31 %
Unclassified	root	N/A	18.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.37 %
Unclassified	root	N/A	18.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	56.07 %
Unclassified	root	N/A	18.69 %
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	37.38 %
Unclassified	root	N/A	18.69 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	10.28 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Crenarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Unclassified	root	N/A	18.69 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.28 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	5.61 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
unclassified Thermoproteota	no rank	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Unclassified	root	N/A	18.69 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.28 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	5.61 %
Crenarchaeota archaeon 13_1_20CM_2_51_8	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	0.93 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Unclassified	root	N/A	18.69 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	5.61 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.87 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.93 %
Scytonemataceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae	0.93 %
Crenarchaeota archaeon 13_1_20CM_2_51_8	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Unclassified	root	N/A	18.69 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	5.61 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	1.87 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.93 %
Scytonema	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema	0.93 %
Crenarchaeota archaeon 13_1_20CM_2_51_8	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.78 %
Unclassified	root	N/A	18.69 %
Acidobacteria bacterium 13_1_20CM_58_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	5.61 %
Granulicella sp. S156	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	1.87 %
Scytonema hofmannii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema → Scytonema hofmannii	0.93 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.93 %
Crenarchaeota archaeon 13_1_20CM_2_51_8	species	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001385\|JGI20193J14888_1020782	Not Available	1064	Open in IMG/M
3300002557\|JGI25381J37097_1083512	Not Available	529	Open in IMG/M
3300002911\|JGI25390J43892_10171111	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300002914\|JGI25617J43924_10065980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1322	Open in IMG/M
3300002914\|JGI25617J43924_10106013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1001	Open in IMG/M
3300002914\|JGI25617J43924_10207685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	652	Open in IMG/M
3300003218\|JGI26339J46600_10046741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1170	Open in IMG/M
3300004082\|Ga0062384_101086402	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300004104\|Ga0058891_1449419	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	549	Open in IMG/M
3300004152\|Ga0062386_100745806	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	805	Open in IMG/M
3300004152\|Ga0062386_101703688	Not Available	526	Open in IMG/M
3300005175\|Ga0066673_10003916	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5763	Open in IMG/M
3300005179\|Ga0066684_10900505	Not Available	578	Open in IMG/M
3300005180\|Ga0066685_10125857	All Organisms → cellular organisms → Bacteria	1729	Open in IMG/M
3300005332\|Ga0066388_105662603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300005450\|Ga0066682_10755672	Not Available	591	Open in IMG/M
3300005537\|Ga0070730_10006087	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10333	Open in IMG/M
3300005552\|Ga0066701_10741586	Not Available	588	Open in IMG/M
3300005554\|Ga0066661_10135789	Not Available	1496	Open in IMG/M
3300005554\|Ga0066661_10224890	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	1163	Open in IMG/M
3300005561\|Ga0066699_10968555	Not Available	590	Open in IMG/M
3300005569\|Ga0066705_10416786	Not Available	841	Open in IMG/M
3300005602\|Ga0070762_10038212	All Organisms → cellular organisms → Bacteria	2602	Open in IMG/M
3300006055\|Ga0097691_1000379	All Organisms → cellular organisms → Bacteria	40285	Open in IMG/M
3300006055\|Ga0097691_1018645	All Organisms → cellular organisms → Bacteria	3072	Open in IMG/M
3300006796\|Ga0066665_10142272	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300006796\|Ga0066665_10618072	Not Available	868	Open in IMG/M
3300007258\|Ga0099793_10350758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300009038\|Ga0099829_10735253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300009088\|Ga0099830_10422594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1080	Open in IMG/M
3300009089\|Ga0099828_10501084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300009630\|Ga0116114_1165723	Not Available	559	Open in IMG/M
3300010335\|Ga0134063_10740072	Not Available	511	Open in IMG/M
3300010337\|Ga0134062_10006300	All Organisms → cellular organisms → Bacteria → Acidobacteria	4265	Open in IMG/M
3300010341\|Ga0074045_10396881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	895	Open in IMG/M
3300011120\|Ga0150983_12466921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1235	Open in IMG/M
3300011120\|Ga0150983_15225777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300011269\|Ga0137392_10139962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1946	Open in IMG/M
3300011271\|Ga0137393_10081225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2607	Open in IMG/M
3300011271\|Ga0137393_10196072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1702	Open in IMG/M
3300012096\|Ga0137389_10024038	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4328	Open in IMG/M
3300012199\|Ga0137383_10320677	All Organisms → cellular organisms → Bacteria → Acidobacteria	1135	Open in IMG/M
3300012202\|Ga0137363_10530994	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	990	Open in IMG/M
3300012202\|Ga0137363_11531767	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300012205\|Ga0137362_10650500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	907	Open in IMG/M
3300012209\|Ga0137379_10085576	All Organisms → cellular organisms → Bacteria → Acidobacteria	3033	Open in IMG/M
3300012349\|Ga0137387_10094149	All Organisms → cellular organisms → Bacteria	2078	Open in IMG/M
3300012349\|Ga0137387_10138690	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300012361\|Ga0137360_10836758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	792	Open in IMG/M
3300012361\|Ga0137360_11344039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	616	Open in IMG/M
3300012683\|Ga0137398_10012379	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4371	Open in IMG/M
3300012917\|Ga0137395_10012879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4636	Open in IMG/M
3300012923\|Ga0137359_10658870	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300012929\|Ga0137404_10340465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	1310	Open in IMG/M
3300012977\|Ga0134087_10775556	Not Available	516	Open in IMG/M
3300014495\|Ga0182015_10363146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	938	Open in IMG/M
3300018030\|Ga0187869_10039743	All Organisms → cellular organisms → Bacteria	2538	Open in IMG/M
3300018431\|Ga0066655_11006991	Not Available	576	Open in IMG/M
3300018433\|Ga0066667_10343749	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156	1183	Open in IMG/M
3300018468\|Ga0066662_11991054	Not Available	608	Open in IMG/M
3300018482\|Ga0066669_10881979	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300020199\|Ga0179592_10012736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3663	Open in IMG/M
3300020583\|Ga0210401_10080486	All Organisms → cellular organisms → Bacteria → Acidobacteria	3066	Open in IMG/M
3300021086\|Ga0179596_10163098	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1067	Open in IMG/M
3300021170\|Ga0210400_11044879	Not Available	663	Open in IMG/M
3300021432\|Ga0210384_11684938	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	539	Open in IMG/M
3300022532\|Ga0242655_10047586	Not Available	1046	Open in IMG/M
3300025481\|Ga0208079_1004406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6183	Open in IMG/M
3300025619\|Ga0207926_1003147	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6774	Open in IMG/M
3300026295\|Ga0209234_1014836	All Organisms → cellular organisms → Bacteria	2950	Open in IMG/M
3300026310\|Ga0209239_1119730	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300026523\|Ga0209808_1099029	Not Available	1233	Open in IMG/M
3300026528\|Ga0209378_1145375	All Organisms → cellular organisms → Bacteria → Acidobacteria	962	Open in IMG/M
3300026548\|Ga0209161_10020688	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4721	Open in IMG/M
3300026551\|Ga0209648_10010699	All Organisms → cellular organisms → Bacteria → Acidobacteria	7964	Open in IMG/M
3300026551\|Ga0209648_10034078	All Organisms → cellular organisms → Bacteria → Acidobacteria	4436	Open in IMG/M
3300026551\|Ga0209648_10065960	All Organisms → cellular organisms → Bacteria	3058	Open in IMG/M
3300026557\|Ga0179587_10006296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Scytonema → Scytonema hofmannii	5992	Open in IMG/M
3300026557\|Ga0179587_10015249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4061	Open in IMG/M
3300027680\|Ga0207826_1075202	Not Available	931	Open in IMG/M
3300027824\|Ga0209040_10057572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2317	Open in IMG/M
3300027857\|Ga0209166_10012436	All Organisms → cellular organisms → Bacteria	5463	Open in IMG/M
3300027862\|Ga0209701_10357714	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	824	Open in IMG/M
3300027875\|Ga0209283_10072607	All Organisms → cellular organisms → Bacteria	2218	Open in IMG/M
3300027884\|Ga0209275_10079448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1642	Open in IMG/M
3300027903\|Ga0209488_10040320	All Organisms → cellular organisms → Bacteria	3420	Open in IMG/M
3300028536\|Ga0137415_10690627	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21	833	Open in IMG/M
3300028746\|Ga0302233_10308732	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300028747\|Ga0302219_10303560	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300028792\|Ga0307504_10012061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1980	Open in IMG/M
3300028879\|Ga0302229_10368279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	641	Open in IMG/M
3300031715\|Ga0307476_10183487	Not Available	1515	Open in IMG/M
3300031753\|Ga0307477_10054856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2740	Open in IMG/M
3300031753\|Ga0307477_10877404	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300031754\|Ga0307475_10001119	All Organisms → cellular organisms → Bacteria	16021	Open in IMG/M
3300031754\|Ga0307475_10003650	All Organisms → cellular organisms → Bacteria	9431	Open in IMG/M
3300031754\|Ga0307475_10417677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1078	Open in IMG/M
3300031754\|Ga0307475_10731503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300031820\|Ga0307473_10307226	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300031962\|Ga0307479_10079906	All Organisms → cellular organisms → Bacteria	3164	Open in IMG/M
3300032163\|Ga0315281_10015883	All Organisms → cellular organisms → Bacteria	10076	Open in IMG/M
3300032173\|Ga0315268_10000024	All Organisms → cellular organisms → Bacteria	160716	Open in IMG/M
3300032173\|Ga0315268_10001259	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	29069	Open in IMG/M
3300032770\|Ga0335085_10709824	All Organisms → cellular organisms → Bacteria → Acidobacteria	1117	Open in IMG/M
3300032770\|Ga0335085_11816567	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300032892\|Ga0335081_10022045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10303	Open in IMG/M
3300033158\|Ga0335077_11530473	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → unclassified Thermoproteota → Crenarchaeota archaeon 13_1_20CM_2_51_8	637	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.65%
Aquatic	Environmental → Aquatic	9.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.85%
Freshwater	Environmental → Aquatic → Freshwater	9.35%
Peat	Environmental → Terrestrial → Peat	2.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	74.77%
Loam	Environmental → Terrestrial → Soil → Loam	7.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.54%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.61%
Lake	Environmental → Aquatic → Freshwater → Lake	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	25.23%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.61%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.10%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	13.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	12.15%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	8.41%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.67%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.74%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001385	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012	Environmental	Open in IMG/M
3300002557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004104	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF218 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025481	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300026295	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20193J14888_10207822	3300001385	Arctic Peat Soil	VKKDPRSEALRNAPLDSWIALSDDETRVVAQGLTYQEVADELDRLGDNSAVILKTPPRWFPLAV*
JGI25381J37097_10835121	3300002557	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIAAGATYEEVAKQLDDAGDKDSVILKTPKSWLPFAV*
JGI25390J43892_101711111	3300002911	Grasslands Soil	MSAIPNTPRSEALRGAPLDSWIALAEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV*
JGI25617J43924_100659802	3300002914	Grasslands Soil	MHLNNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
JGI25617J43924_101060131	3300002914	Grasslands Soil	MPATLNTPRSAALRAAPLDSWVALAEDETHITATGATYEEVAKRLDDAGDKDSVILKTPKVWLPFAV*
JGI25617J43924_102076852	3300002914	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALSEDETRVIATGATYEEVSKQLDEAGDKDSVILKTPKSWLPLAV*
JGI26339J46600_100467412	3300003218	Bog Forest Soil	MMTSNARSEALRKAPLDSWVALSADETKVVAVGASYEEVTSKLNRMGDTDSVILKTPPAWLXLAL*
Ga0062384_1010864021	3300004082	Bog Forest Soil	MLRKLDNMSPQAAARAKALRSAPLDSWIALSDDETKVVATGKTYQEVAGELDRVRDDSAVIIKTPARWIPFSV*
Ga0058891_14494192	3300004104	Forest Soil	SPCSLLHPRVIGDHAMPATLNTPRSEALRAAPLDSWIALSEDETRVTATGATYAEVSKRLDDAQDKDSVIIKTPKSWLPFAV*
Ga0062386_1007458062	3300004152	Bog Forest Soil	MTPDARSEALRKAPLDSWVALSADETKVVAVGASYAEFASKLNRMGDTDSVILKTPPAWLPLAL*
Ga0062386_1017036882	3300004152	Bog Forest Soil	MTSDARSEALRKAPLDSWVALSADETKVVAVGASYEEVTSKLNQMGDTDSVILKTPPAWLPLAL*
Ga0066673_100039164	3300005175	Soil	MPLRNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0066684_109005052	3300005179	Soil	MSAILNTPRSEALRGAPLDSWIALGEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPK
Ga0066685_101258573	3300005180	Soil	LNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0066388_1056626032	3300005332	Tropical Forest Soil	MPPILNTARSEALRAAPLDSWVALTEDETRIIATGATYEEVAKRLDDAGDTDSIILKTPKSWLPFAV*
Ga0066682_107556721	3300005450	Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0070730_100060878	3300005537	Surface Soil	MAATLNNPRSEVLRGAPLDSWVALAEDETRIIATGATYEDVAKQLDDAGDKDSVILKTPKLWLPFAV*
Ga0066701_107415861	3300005552	Soil	MSAILNTPRSEALRGAPLDSWIALGEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV*
Ga0066661_101357892	3300005554	Soil	MSAILNTPRSEALRGAPLDSWIALGEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0066661_102248902	3300005554	Soil	MSAILNTLRSEALRGAPLDSWIALTEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPQSWLPLAV*
Ga0066699_109685551	3300005561	Soil	MSAILNTPRSEALRGAPLDSWIALGEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLA
Ga0066705_104167862	3300005569	Soil	LRNVGDYAMSAILNTLRSEALRGAPLDSWIALTEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPQSWLPLAV*
Ga0070762_100382124	3300005602	Soil	MAATANIARSEALRAAPLDSWVALSEDETRITASGATYAEVAKLLDDAGDKDSVILKTPKSWLPFAV*
Ga0097691_100037935	3300006055	Arctic Peat Soil	MTPEAAARLEALRAAPLDSWVALSEDETRIVAVGRTYAEVASELDRLGDQQSVILKTPDAWLPLAL*
Ga0097691_10186451	3300006055	Arctic Peat Soil	VKKDPRSEALRNAPLDSWIALSDDETRVVAQGLTYQEVADELDRLGDNSAVILKTPPRWLPLAV*
Ga0066665_101422722	3300006796	Soil	MHLRNVGDYTLFAILNTPRSEALRGALLDSWIALAEDETRVIATGASYEEVAKRLDDAGDKDSIILKTPKSWLPLAV*
Ga0066665_106180722	3300006796	Soil	LPYSLMPLRNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0099793_103507581	3300007258	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVARRLDDAGDKDSVILKTPKSWLPFAV*
Ga0099829_107352532	3300009038	Vadose Zone Soil	MHLKNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0099830_104225942	3300009088	Vadose Zone Soil	MPATLNTPRSEALRSAPADSWVAMSEDETRIIATGATYEEVSKRLDEAGVKDSVIIKTPKSWLRFAI*
Ga0099828_105010842	3300009089	Vadose Zone Soil	MSAILNTPRSGALRGAPLDSWIALSEDETRVIATGATYQEVAEQLDDAGDKDSVILKTPKSWLPLAV*
Ga0116114_11657232	3300009630	Peatland	MSDARTEALRNAPLDSWVALSADETRVVAVGTTYEEVSTALDRMGDTDSVILKTPAAWLPMAL*
Ga0134063_107400722	3300010335	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALGEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPQSWLPLAV*
Ga0134062_100063001	3300010337	Grasslands Soil	LRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0074045_103968813	3300010341	Bog Forest Soil	MSDARSDALRKAPLDSWIALSPDQSSVVAVGGSYEEVAAALDRMGDTESVILKTPSAWLPMAL*
Ga0150983_124669212	3300011120	Forest Soil	MPATLNTPRSEALRAAPLDSWIALSEDETRVTATGATYAEVSKRLDDAQDKDSVIIKTPKSWLPFAV*
Ga0150983_152257771	3300011120	Forest Soil	MAATANTARSEALRAAPLDSWVALSEDETRITASGATYGEVAKLLDDAGDKDSVILKTPKSWLPFAV*
Ga0137392_101399623	3300011269	Vadose Zone Soil	MHLNNVGDYAMSAILNTPRSEALRSAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0137393_100812251	3300011271	Vadose Zone Soil	TMPATLNTPRSAALRAAPLDSWVALAEDETHITATGATYEEVAKRLDDAGDKDSVILKTPKVWLPFAV*
Ga0137393_101960721	3300011271	Vadose Zone Soil	NVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0137389_100240381	3300012096	Vadose Zone Soil	MHLRNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATSEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0137383_103206772	3300012199	Vadose Zone Soil	MHQRNVGDYAMSAIANTPRGEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0137363_105309941	3300012202	Vadose Zone Soil	MPATLNAPRSEALRSAPLDSWIALTEDESGIIAVGATYEEVSKQLDKAGLENSIIIKTPKSWMPFAV*
Ga0137363_115317671	3300012202	Vadose Zone Soil	ALRGAPLDSWIALSEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV*
Ga0137362_106505002	3300012205	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALSEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV*
Ga0137379_100855762	3300012209	Vadose Zone Soil	MPATLNEPRSEALRSAPLDSWIALTEDESGIVATGATYEEVSKQLDKAGLENSIIIKTPKSWMPFAV*
Ga0137387_100941494	3300012349	Vadose Zone Soil	MHQRNVGDYAMSAIANTPRGEALRGAPLDSWIALTEDETRVIAAGATYEEVAKQLDDAGDKDSVILKTPKSWLPFAV
Ga0137387_101386902	3300012349	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALTEEETRVIAPGATYEEVAKRLDDAGDKDSVILKTPKSCLPFAV*
Ga0137360_108367581	3300012361	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVARRLDDAGDKDSAILKTPKSWLPFAV*
Ga0137360_113440392	3300012361	Vadose Zone Soil	HLKKAGDYAMSAILNTPRSEALRGAPLDSWIALSEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV*
Ga0137398_100123796	3300012683	Vadose Zone Soil	MSVILNTPPSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0137395_100128793	3300012917	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV*
Ga0137359_106588701	3300012923	Vadose Zone Soil	MPATLNAPRSEALRAAPLDSWIALTEDESSIVAIGATYEEVSKHLDEAGLENSIIIKTPKSWMRFAV*
Ga0137404_103404652	3300012929	Vadose Zone Soil	MPATLNAPRSEALRSAPLDSWIALTEDESGIIAVGATYEEVSKQLDKAGLENSIIIKTPKCWMPFAV*
Ga0134087_107755561	3300012977	Grasslands Soil	MHLRKVGDYAMSAIPNTPRSEALRGAPLDSWIALAEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA*
Ga0182015_103631462	3300014495	Palsa	MPGIYKNTPRSEALLAAPLDSWVALTDDETRVIATGATYEEVSKRLDEAEVADSIIIKTPKSWLRFAI*
Ga0187869_100397433	3300018030	Peatland	MSDARTEALRNAPLDSWVALSADETRVVAVGTTYEEVSTALDRMGDTDSVILKTPAAWLPMAL
Ga0066655_110069912	3300018431	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA
Ga0066667_103437492	3300018433	Grasslands Soil	MSAILNTLRSEALRGAPLDSWIALTEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPQSWLPLAV
Ga0066662_119910541	3300018468	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV
Ga0066669_108819791	3300018482	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPL
Ga0179592_100127361	3300020199	Vadose Zone Soil	MSAILSTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0210401_100804862	3300020583	Soil	MPATLNTPRSEALRAAPLDSWIALSEDETRVTATGATYAEVSKRLDDAQDKDSVIIKTPKSWLPFAV
Ga0179596_101630982	3300021086	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0210400_110448792	3300021170	Soil	MPAILNAPRSEALRSAPLDSWVALAEDETRITAIGASYGEVAKRLDDAGDKDSVILKTPKSWHPFAV
Ga0210384_116849381	3300021432	Soil	GYILPYSLMHLRSVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0242655_100475861	3300022532	Soil	MPAILNAPRSEALRSAPLDSWVALAEDETRITAIGASYGEVAKRLDDAGDKDSVILKTPK
Ga0208079_10044065	3300025481	Arctic Peat Soil	VKKDPRSEALRNAPLDSWIALSDDETRVVAQGLTYQEVADELDRLGDNSAVILKTPPRWFPLAV
Ga0207926_10031477	3300025619	Arctic Peat Soil	MTPEAAARLEALRAAPLDSWVALSEDETRIVAVGRTYAEVASELDRLGDQQSVILKTPDAWLPLAL
Ga0209234_10148365	3300026295	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIAAGATYEEVAKQLDDAGDKDSVILKTPKSWLPFAV
Ga0209239_11197302	3300026310	Grasslands Soil	MSAIPNTPRSEALRGAPLDSWIALAEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV
Ga0209808_10990291	3300026523	Soil	MSAILNTPRSEALRGAPLDSWIALGEDESRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAV
Ga0209378_11453753	3300026528	Soil	MHLRNVGDYTLFAILNTPRSEALRGALLDSWIALAEDETRVIATGASYEEVAKRLDDAGDKDSIILKTPKSWLPLAV
Ga0209161_100206882	3300026548	Soil	MPLRNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPLAA
Ga0209648_100106999	3300026551	Grasslands Soil	MHLNNVGDYAMSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0209648_100340788	3300026551	Grasslands Soil	MPATLNTPRSAALRAAPLDSWVALAEDETHITATGATYEEVAKRLDDAGDKDSVILKTPKVWLPFAV
Ga0209648_100659602	3300026551	Grasslands Soil	MSAILNTPRSEALRGAPLDSWIALSEDETRVIATGATYEEVSKQLDEAGDKDSVILKTPKSWLPLAV
Ga0179587_100062965	3300026557	Vadose Zone Soil	MSATLNTTRSQALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSFILKTPKSWLPFAV
Ga0179587_100152496	3300026557	Vadose Zone Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVARRLDDAGDKDSVILKTPKSWLPFAV
Ga0207826_10752021	3300027680	Tropical Forest Soil	LGGNEAVKMTSDARSEALRKAPLDSWVALSADETRVVAVGASYEEVTSKLGRMGDTDSIILKTPSAWLPLAL
Ga0209040_100575723	3300027824	Bog Forest Soil	MMTSNARSEALRKAPLDSWVALSADETKVVAVGASYEEVTSKLNRMGDTDSAILKTPPAWLPLAL
Ga0209166_100124363	3300027857	Surface Soil	MAATLNNPRSEVLRGAPLDSWVALAEDETRIIATGATYEDVAKQLDDAGDKDSVILKTPKLWLPFAV
Ga0209701_103577142	3300027862	Vadose Zone Soil	MHLRNVGDYAMPATLNTPRSEALRSAPADSWVAMSEDETRIIATGATYEEVSKRLDEAGVKDSVIIKTPKSWLRFAI
Ga0209283_100726075	3300027875	Vadose Zone Soil	MPATLNTPRSEALRSAPADSWVAMSEDETRIIATGATYEEVSKRLDEAGVKDSVIIKTPKSWLRFAI
Ga0209275_100794482	3300027884	Soil	MAATANIARSEALRAAPLDSWVALSEDETRITASGATYAEVAKLLDDAGDKDSVILKTPKSWLPFAV
Ga0209488_100403205	3300027903	Vadose Zone Soil	MSVILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0137415_106906272	3300028536	Vadose Zone Soil	MSVILNTPPSEALRGAPLDSWIALTEDETRVIATGATYEEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0302233_103087322	3300028746	Palsa	VKTDARSEALRKAPLDSWIALSDDESRVVAHGATYAAVASELDARGDNSSVILKTPAEWLPLAV
Ga0302219_103035602	3300028747	Palsa	KTDARSEALRKAPLDSWIALSDDESRVVAHGATYAAVASELDARGDNSSVILKTPAEWLPLAV
Ga0307504_100120614	3300028792	Soil	MPATLDTPRSAALRAAPLDSWVALAEDETHITATGATYEEVAKRLDDAGDKDSVILKTPKVWLPFAV
Ga0302229_103682791	3300028879	Palsa	EALRKAPLDSWIALSDDESRVVAHGATYAAVASELDARGDNSSVILKTPAEWLPLAV
Ga0307476_101834872	3300031715	Hardwood Forest Soil	MPPTINVQRSDALRGAPLDSWVALTEDETRISAIGATYEEVAKRLNEAGDDTSIILKTPKSWAIFVA
Ga0307477_100548562	3300031753	Hardwood Forest Soil	MSAILNTPRSEALRGAPLDSWIALSEDETRVVATGATYEEVAKHLDDAGDKDSVILKTPKSWLPFAV
Ga0307477_108774041	3300031753	Hardwood Forest Soil	NVGDYAMSVILNTSRSEALRGAPLDSWIALSEDETRVVATGATYEEVAMRLDDAGDKDSVILKTPTSWLPLAV
Ga0307475_1000111921	3300031754	Hardwood Forest Soil	MSAILNTPRSEALRGAPLDSWIALSEDETRVVATGATYEEVAKHLDDAGDKDSVILKTPKSWLPLAV
Ga0307475_100036503	3300031754	Hardwood Forest Soil	MSAILNTPRSEALRGAPLDSWIALSEDETRVVATGATYEEVAKRLDEAGDRDSVILKTPKSWLPLAV
Ga0307475_104176771	3300031754	Hardwood Forest Soil	MAGILKNTARSEALRAAPLDSWVALTEDETRVIATGATYGEVSKRLDEAEVTDSIIIKTPKSWLRFAI
Ga0307475_107315031	3300031754	Hardwood Forest Soil	MSAILNTPRSEALRGAPLDSWIALTEDETRVIATGATYQEVAKRLDDAGDKDSVILKTPKSWLPFAV
Ga0307473_103072261	3300031820	Hardwood Forest Soil	MSATLNTPRSEALRGAPLDSWIALSEDETRVIATGATYEEVAKRLDDAGDRDSVILKTPKSWLPLAV
Ga0307479_100799062	3300031962	Hardwood Forest Soil	MHLRNVEDYAMSVILNTPRSEALRGAPLDSWIALTEDETRVIATGATYEEVAKQLDDAGDKDSVILKTPKSWLPLAV
Ga0315281_100158834	3300032163	Sediment	MPATLNIARSEALRAAPLDSWIALAEDETRIVATGATYEEVSRRLDEAGVEDSVIIKTPKSWIRFAV
Ga0315268_10000024116	3300032173	Sediment	MPATLNIARSEALRAAPLDSWIALTEDETRIVATGATYEEVSRRLDEAGVEESVIIKTPKSWIRFAV
Ga0315268_1000125923	3300032173	Sediment	MRAKNDARSEALRKAPLNSWVALSGDETRVVAVGKTYGEVAEQLDRAGDEHSVILRTPDAWLPLAV
Ga0335085_107098242	3300032770	Soil	MNSNQRAETLRNAPLDSWIALSDDESRVVAQGNSYEEVAAQLDKLGDQSAVILKTPPHWHPFAL
Ga0335085_118165672	3300032770	Soil	MKSNQRAETLRNAPLNSWIALSDDESRVVAQGNSYEEVAAQLDKLGDKSAVILKTPPNWHPFAL
Ga0335081_100220453	3300032892	Soil	MSDARSEVLRNAPLDSWVALSADQTRIVAVGNSFEEVSAALDRLGDSEAVILKTPPAWLPMAL
Ga0335077_115304732	3300033158	Soil	NMSDARSEVLRNAPLDSWVALSADQTRIVAVGNSFEEVSAALDRLGDSEAVILKTPPAWLPMAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092932

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences