NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093082

Metagenome / Metatranscriptome Family F093082

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093082
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 63 residues
Representative Sequence EGFYKAWPRNKPFQGFTPLKMVFGDPILPPPESEASEAAYEKLTAELKARVVEMWEGLRR
Number of Associated Samples 93
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.94 %
% of genes near scaffold ends (potentially truncated) 98.11 %
% of genes from short scaffolds (< 2000 bps) 93.40 %
Associated GOLD sequencing projects 89
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (77.358 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.207 % of family members)
Environment Ontology (ENVO) Unclassified
(27.358 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(59.434 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 35.23%    β-sheet: 0.00%    Coil/Unstructured: 64.77%
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51015202530354045505560EGFYKAWPRNKPFQGFTPLKMVFGDPILPPPESEASEAAYEKLTAELKARVVEMWEGLRRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
77.4%22.6%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Peatland
Bog Forest Soil
Bog
Peatland
Iron-Sulfur Acid Spring
Watersheds
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Glacier Forefield Soil
Surface Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Forest Soil
Hardwood Forest Soil
Soil
Rice Paddy Soil
Tropical Peatland
Bog Forest Soil
Thawing Permafrost
Bog
Palsa
Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Soil
Palsa
Bog
Arabidopsis Rhizosphere
Rhizosphere
Corn Rhizosphere
Rhizosphere
Boreal Forest Soil
2.8%6.6%4.7%3.8%4.7%2.8%3.8%3.8%3.8%13.2%3.8%2.8%5.7%2.8%6.6%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10009941423300002245Forest SoilMARNRPFQGFAPLSITFGDPIIPPPESEASEAAYEKLTAELRARVVKMWEGLGRQASDKT
JGIcombinedJ26739_10031870513300002245Forest SoilEAWPRNRSFQGFKPLKMMFGDPIMPPPESAASEEAYEKLTADLKARVVRMWEELRRS*
JGI26345J50200_103623423300003352Bog Forest SoilAIEGFYEVWPRNKPFHGLTPLKIVFGNPILPPPEGEASEAAYEKLTAELRARVVGMWEELRSKDLNKK*
Ga0062385_1004418213300004080Bog Forest SoilAIDGFYEAWPRNRSFQGFAPLSIVFGDPIIPPPESEASEAAYEKLTAELKARVVTMWEHLRERDRAGVGHISATENRP*
Ga0062384_10060578113300004082Bog Forest SoilVAIEGFYEAWPRNRPFQGFKPLSIVFGDPIIPPPESEASEAAYEKMTARLRARVVEMWESLRERPSTDRRS*
Ga0062387_10172174913300004091Bog Forest SoilHKAWPRNQSFQGFTPLQMVFGDPISPPPESEASEDAYEKLTTDLKLRIVGMWEELRKPQ*
Ga0062386_10074968423300004152Bog Forest SoilVAIEGFYKAWPRNKSFQGFARLKMVFGDPILPPPESEASEAAYEKLTAELKGRVVEMWKDLQKEDVHAH*
Ga0063455_10070756113300004153SoilVPVAIAGFHDAWPRNRSFQGFKPLKMVIGDPIIPPPESEASEQTYEKLTAELKSRVVRMWEGLRGDQ*
Ga0070681_1201770113300005458Corn RhizosphereKPFQRFAPLEIAIGGPIYPPPESAASEQAYEQLTAELRARVLSMWEKLPKNRG*
Ga0070731_1018850913300005538Surface SoilWPRGKSFLQKLAPLRMQFGKPIFPPPDEEASEEAYEKLTAELKKKVVAMWQELRER*
Ga0070733_1006385743300005541Surface SoilIEGFDKAWPRNKPFHGFTALKIVFGDPIIPPPENEASESAYEKLTTELKARVVAMWKELRGKVSSEGVSGEGPRH*
Ga0066701_1047234023300005552SoilPLKIVFGAPIYPPQEYEASEAAYEKLTVQLKQRVVEMWEELRASNEKARAATAD*
Ga0070762_1040406023300005602SoilWPRNKPFQGFKPLKMVFGDPILPPPQSEASEATYEKLTAELKTKVVMMWEQLRAHL*
Ga0070762_1063652513300005602SoilNKPFQGFKPLKIVIGDPILPQPESEASEAAYEKLTADLRARVVEMWEHQRRPKPEQTS*
Ga0070764_1063590713300005712SoilYEVWPRNKPFQGFMPLKMAFGNPILPPPESEASEAAYEQLTRDLKARVVEMWERLRKESPRAH*
Ga0075300_101207913300005876Rice Paddy SoilPVAIEGFYDAWPRKKSFQRFAPLEIMIGDPILPPPESSASEEVYEKLTAELKARVVSMWEKLPKNR*
Ga0070717_1094397823300006028Corn, Switchgrass And Miscanthus RhizosphereWPRKKPFQRFAPLEIAIGDPIFPPPESAASEQAYEQLTAELRARVVSMWEKLPRNRG*
Ga0066651_1034479723300006031SoilIEGFYDAWPRKKAFQRFAPLEIAIGDPIFPPPESAASEQAYEKLTAELRARVVSMWEKLPKNRG*
Ga0066652_10150156213300006046SoilYDAWPRNQKFQGFKPLKMVIGDPISPPPESEASEAAYEKLTADLKARIVEMWEGLRKAE*
Ga0075030_10038430723300006162WatershedsAIEGFYDAWPRNQAFKGFKPLKMVFGDPILPPPESEASEAAYEKLTADVKARIVAMWDDLRQSD*
Ga0075030_10039977013300006162WatershedsIHTQVPIIPVAIEGFYDVWPRGKNFFQKIAPLQMVFGAPIYPPPESEASEATYEQLTADLKSRIVEMWEKLRQQG*
Ga0116133_105978013300009623PeatlandGFYKAWPRNKGFQGFTALKMVFGDPINPPSESKASEATYEKLTAELKARVVEMWEELQKHS*
Ga0116119_108966323300009629PeatlandAIEGFYKAWPRNKGFQGFTALKMVFGDPINPPSESKASEATYEKLTAELKARVVEMWEELQKHS*
Ga0116216_1000439843300009698Peatlands SoilVWPRGKKFLQKRAPVRMVFGQPISPPPESEDSEAAYEKLTAELKARIVEMWERLRETR*
Ga0126373_1046694933300010048Tropical Forest SoilWPRNKPFQRFAPLEMMIGEPITPPPEAEASEQAYEKLTAELKGRVVAMWHQLPKNR*
Ga0126373_1116229723300010048Tropical Forest SoilIEGFYEAWPRNKPFQKFAPLRIVIGDPILPPPEAEASEAVYEKMTVQLKEKIVGMWNKLRAAE*
Ga0074046_1016851823300010339Bog Forest SoilSIHMQVPILPVAIDGFEKVWPRTKAFQGFFPLRLTIGDPIMPPPESDASEEAYEKLTAELKARVITMWQELRARP*
Ga0074046_1037458123300010339Bog Forest SoilWPRTKAFQGFFPLRLSIGDPIMPPPESDASEEAYEKLTAELKARVVTMWQELRAKGES*
Ga0126378_1153837233300010361Tropical Forest SoilAAILSIHLQVPVVPVAIDGFHDAWPRGQKFRGFKPLKMKFGDAIHPPPESAASEDEYEKLTAEVKARIVEMWDEIRR*
Ga0126379_1150229723300010366Tropical Forest SoilEGFYEVWPRNRGFQGFKPVKMVFGDPILPPPESEASEQAYEKLTADLKGRVVEMWGGLRQTK*
Ga0134128_1056429533300010373Terrestrial SoilDAWPRKKSFQRFAPLEIMIGDPILPPPESSASEQVYAELTAELKSRVVSMWEKLPKNR*
Ga0136449_10188655723300010379Peatlands SoilVWPRGKKFLQKRAPVRMVFGQPISPPPESEDSEAAYEKLTAELKARIVEMWEKLRETR*
Ga0126344_123544813300010866Boreal Forest SoilEAWPRNRPFQGFKPLKIIFGDPILPPPQSEASEAAYEKLTAELKTKVVTMWEQLRAHL*
Ga0137381_1174445313300012207Vadose Zone SoilIEGFYDAWPRNQKFQGFKPLKMVIGDPISPPPESEASEAAYEKLTADLKARIVEMWEGLRKAE*
Ga0137366_1100097213300012354Vadose Zone SoilPRNQKFRGFAPLKIVLGDPIVPPPESQASEAAYEKLTADVKSQIVEMWEELRTPE*
Ga0157372_1057244233300013307Corn RhizosphereEGFYDAWPRKKPFQRFAPLEIAIGDPIYPPPESAASEQAYEKLTAELRARVVSMWEKLPKNR*
Ga0157372_1082854013300013307Corn RhizospherePVAIEGFYDAWPRKKPFQRFAPLEIAIGDPIYPPPESAASEQAYEKLTAELRGRVVSMWEKLPKNRG*
Ga0181529_1020714223300014161BogFHKAWPRNKSFQGFTPLKMVFGDPIIPPPESEASEAAYEKLTAELKGRVVEMWKGLQKEEAHAN*
Ga0181531_1025062313300014169BogIEGFYEVWPRNKPFQGFAPLKIVFGSPILPPPESEASEAAYEKLTADLRGKVVEMWEELRSHAFHKT*
Ga0181537_1053085413300014201BogIEGFYEAWPRNQSFKKFAPLKMSFGDTIVPPPECNASEAAYEQLTTTLKTRVVAMWEHLRKS*
Ga0182018_1053440923300014489PalsaWPRNKPFQKFAPLKIVFCDPIVPPPASEASEAAYEKLTAELKARVVEMWERLRSQVPDEK
Ga0181525_1030446113300014654BogPRNKPFRGFKPLKMVFGDPILPPPESEASEAAYEKLTAELRARVVGMWEELRNKASDEK*
Ga0181525_1031967523300014654BogAIEGFYEAWPRNQAFRGFTPLKMTFGDPILPPPESEASEAAYEKLTADLKARIVAMWETLRSR*
Ga0182030_1098084913300014838BogGFEKVWPRGKSFQGFFPMKMEFGEPILPPAESEASEAAYEKLTAELKARVVAMWERLRRE
Ga0167638_106668923300015197Glacier Forefield SoilVPVAIEGFYDAWPRNQAFRGFKPLKMIFGDPILPPPESEASEAAYEKLTSDLKARIVEMWEGLRESP*
Ga0182005_110098423300015265RhizosphereEGFYDAWPRKKSFQRFAPLEIMIGDPILPPPESSASEQVYAELTAELKSRVVSMWEKLPANR*
Ga0132255_10333516423300015374Arabidopsis RhizospherePVAIAGFYDAWPRNQSFQGFKPLKMIFGDPMIPPPESEASKETYEKLTADLKARVVRMWEDLRANP*
Ga0187891_121358723300017996PeatlandYKAWPRNKAFQGFTHLQMVFGDPIIPPPDSEASEAAYEKLTADLKARVVEMWEELRKQHPGER
Ga0187767_1005793913300017999Tropical PeatlandPVAIEGFYDVWPRSKPFQGFKPLKIVFGDPIYPSPESEASEQSYEKLTAELKARIVAMWEDLRKS
Ga0187872_1042157913300018017PeatlandMQVPIVPLAIEGFYKAWPRNKGFQGFTPLKMVFGDPINPPSESKASEATYEKLTAELKARVVEMWEELQKHS
Ga0187887_1010238933300018043PeatlandVAIEGFFEVWPRSHAFRGFKPLKMVFGDPIDPPPESEASEAAYEKLTADLKARVVDMWEKLRQS
Ga0187770_1047077213300018090Tropical PeatlandRGASFFQKIAPLQMVFGKPLHPPPESDASEAAYERLTAELKARVVEMWKELREETQAPGK
Ga0066662_1291127713300018468Grasslands SoilIEGFYDAWPRKKPFQRFAPLEIAIGDPIFPPPESAASEQAYGQLTAELRARVVSMWEKLPKDRR
Ga0179592_1009904433300020199Vadose Zone SoilRNQSFQKFVPLKMTFGDPIDPPPESEASEAVYEKHTAALKARIVAMWEELRTEELRSHN
Ga0210407_1082541113300020579SoilYAAWPRNQSFRGFTPLEMVFGDPISPPPEAEASEAAYEKLTADLKARIVAMWEKIRRGDR
Ga0215015_1018663213300021046SoilMQVPIVPLAIEGFYEAWPRNKSFQSFTRLKMAFGDPIYPPPEAEASEAVYEKLTTDLKSRVVEMWEGLRKGHPQPQE
Ga0210406_1000071113300021168SoilAWPRNQRFRGFTPLQMMVGDPIYPPPESAASEAAYDKLTFDLKGRIVEMWEGLRKPQ
Ga0210387_1111648223300021405SoilAIEGFYEAWPRNKPFQGFTPLKIVIGDPILPPPESTASEAAYETLTAQLRERIVKMWEGLPSKASDEK
Ga0210386_1059656923300021406SoilGFYDVWPRHKNFPKFGPLEMTIGKPMLPPPESEASEATYERFTAELKARVAEMWEELREKNGNRKPSV
Ga0210394_1045671323300021420SoilSFARFAPLRMVFGDPIYPPRESEASEAAYAQLTATLRTRVVGMWDELRRKTPPGDRALAG
Ga0210394_1077773813300021420SoilWPRNQNFQGLTPLKMVFGKPISPPPEAEASEAAYEKLTADLKARIVAMWEGLRSR
Ga0210394_1151920713300021420SoilAWPRNQSFQGFTPLKMVFGDPISPPPEAEASEAAYEKLTADLKARIVAMWEKIRRGDR
Ga0210391_1049910713300021433SoilIVPVAIEGFYDAWPRNKSFQKFAPLKMTIGDPILPPPESEASEAAYEKLTADLKARIVAMWEELKKT
Ga0210402_1133278613300021478SoilPRNKPFQKFVPLKMVFGDPIIPPPESEASEAAYEKLTAQLKARVVKMWEGLRSETSAGS
Ga0210402_1194232313300021478SoilIVPVAIEGFYVAWPRNQTFQGFTPLQMVFGAPISPPPEAEASEAAYEKLTADLKARIVAMWENLRSK
Ga0210410_1007047613300021479SoilIVPVAIEGFYAAWPRNQSFRGFTPLKMVFGKPISPPPEAEASEAAYEKLTADLKARIVAMWEGLRSR
Ga0210409_1170421923300021559SoilFYDAWPRNQAFRGFTPLRMVFGDPISPPPESEASEAAYEKLTADLKARIVEMWARLRKSE
Ga0213853_1145891023300021861WatershedsDGFYESWPRGKHFFQRLAPLKMTIGDPIFPPPESEASEAAYENLTSDLKARVVEMWEQLRESR
Ga0224562_100967323300022733SoilGFYKAWPRNKPFQGFTPLKMVFGDPILPPPVSEASEAAYEKLTAELKARVVEMWEGLRR
Ga0224571_10911023300022734RhizosphereEGFYKAWPRNKPFQGFTPLKMVFGDPILPPPESEASEAAYEKLTAELKARVVEMWEGLRR
Ga0209171_1002041073300025320Iron-Sulfur Acid SpringGFNDAWPRNKPFRKFVPLKMVFGDPIIPPPESEASEAAYEKLTAQLKARVVEMWEGLQNQASGN
Ga0208286_101616913300026015Rice Paddy SoilEGFYDAWPRKKSFQRFAPLEIMIGDPILPPPESSASEEVYEKLTAELKARVVSMWEKLPKNR
Ga0209803_101675353300026332SoilFHDAWPRGMKFQKFAPLKIVFGAPIYPPQEYEASEAAYEKLTVQLKQRVVEMWEELRASNEKARAATAD
Ga0257154_103392113300026467SoilDVWPRHKNFPKFGPLEMMIGKPMLPPPESEASEATYERFTAELKARVAEMWEELQEKNGNRKPSV
Ga0208237_105775223300027080Forest SoilIEGFYEVWPRNKSFQGFKPLKIVFGDPIIPPPESEASEAAYEELTAELKARVVEMWKGLRQAKN
Ga0209008_105275913300027545Forest SoilGFYQAWPRNRPFQGFAPLSITFGDPIIPPPESEASEAAYEKLTAELRARVVKMWQGLGRQASDKT
Ga0209525_112564613300027575Forest SoilGFYEAWPRGKSFFQKRVPLKITVGDPLLPPPESEASEEAYEQLTAELKSRIVTMWEDLRK
Ga0209420_117902323300027648Forest SoilGFYEVWPRNKSFQRFAPLKMQFGDPIIPPRESEASEETYEKLTAQLKARVVEMWEGLRR
Ga0209908_1000826113300027745Thawing PermafrostIEGFYKVWPRNKPFQGFTPLKMVFGDPIIPPLESEASEAAYENLTAELKNRVVEMWEELR
Ga0209448_1012225413300027783Bog Forest SoilVAIEGFYEAWPRNKPFQGFAPLKIAFGDPIIPPSENEASEAAYEKLTAELKERVVAMWERLRKEHPQPQ
Ga0209139_1018107623300027795Bog Forest SoilEGFHDAWPRNKSFQKFTPLKMVFGKPIVPPPESEASEAAYEKLTADLKANVAEMWNGLRSEREARVQVQAGDTDH
Ga0209517_1047329013300027854Peatlands SoilIVPVAIEGFYQAWPRNQAFRGFTPLRMVFGDPISPPPESEASEAVYEKLTADLRARIVAMWENLRKSQ
Ga0209415_1065154913300027905Peatlands SoilGFYDAWPRGRPFQKFAPLRMKIGDPILPPPEAEASEAAYERLIMELKTQIVSMWTELRQTGPETTQ
Ga0209698_1094918513300027911WatershedsFYQAWPRSKKFFQKIAPLTMVFGAPIYPPPESEASEAAYENLTADLKSRIVEMWQKLRSE
Ga0209698_1122084113300027911WatershedsPVAIEGFYEVWPRGKNFFQKIAPLQMVFGAPIYPPPESEASEATYEQLTADLKSRIVEMWEKLRQQG
Ga0265350_10314213300028013SoilYQAWPRNRPFQGFAPLSIVFGDPIIPPPESEASEAAYEKLTAELRARVVKMWEALRNEGR
Ga0302219_1041228623300028747PalsaAIDGFYQAWPRNKSFQGSAPLKMMFGNPILPPPESEASEEAYEKLTAELKARVVEMWERLRH
Ga0302198_1041006123300028765BogVWPRSQAFQGFKPLKMVIGDPILPPPESEASEVAYEKLTSDLKSRVVEMWKQLRPHQ
Ga0311368_1045283223300029882PalsaYEVWPRNKSFQRFAPLKMQFGDPIIPPRESEASEETYEKLTAQLKARVVEMWEGLRR
Ga0311371_1046969133300029951PalsaPRNKPFQRFTPLKIVFGDPIFPPPESEASEAAYEKLTRDLKARVVEMWEGLRKQSPRAD
Ga0311371_1061308313300029951PalsaFYDAWPRGAPFFRKIAPLKIVFGKPIFPPPESEASEQAYEKLTADLKARVVEMWEELRSS
Ga0311353_1079972923300030399PalsaRGKGFFQKITPLKMSFGKPIFPPPESEASEAAYENLTAELKARVVAMWEQLRNASDSHGPPAA
Ga0311370_1102249613300030503PalsaYEAWPRNKPFQRFTPLKIVFGDPIFPPPESEASEAAYEKLTRDLKARVVEMWEGLRKQSPRAD
Ga0170834_11352448423300031057Forest SoilAIEGFYDAWPRNQAFRGFTPLKMIFGKPITPPPEAEASEAAYEKLTADLKARIVAMWNQLSESQ
Ga0170824_10953853913300031231Forest SoilAWPRNKSFQGFTPLKMAFGDPIIPPPESDASEEAYEKLTAELRARVVEMWEQLRRQTPPR
Ga0170824_11950387523300031231Forest SoilVAIEGFYDAWPRNQAFRGFTPLKMVFGDPISPPPESEASEAAYEKLTADLKAQIVELWEELRTK
Ga0302324_10112589513300031236PalsaAWPRGKSFPQKFAPLKMQFGKPILPPPESEASEAAYEKHTTELKTRVTAMWEGLRSH
Ga0170818_10219245023300031474Forest SoilVAIEGFYDAWPRNQAFRGFTPLKMVFGDPISPPPESEASEPAYEKLTADLKARIVELWEGLRTK
Ga0310686_10488594413300031708SoilIVPVAIAGFYEVWPRNKSFQGFKPLKIIFGDPILPPPESEASESAYEQLTAELKARVVTMWEELRIRA
Ga0310813_1208388813300031716SoilWPRKKSFQRFAPLEIMIGDPILPPPESSASEQVYAELTAELKSRVVSMWEKLPKNR
Ga0310910_1153989913300031946SoilVAIEGFYEVWPRNKPFQGFKPLKIKLGNPILPPPESEASEEAYEKLTAELKTRVVTMWDDLRENT
Ga0307470_1081835113300032174Hardwood Forest SoilDAWPRAKPFQGFKPLKIVFGDPILPPPEAEASEEAYEKLTAELRSRVVTMWEGLRENR
Ga0335079_1036769813300032783SoilPVAIEGFYEVWPRSKAFQGFKPLKMVFGDPIYPSPESEVSEQTYEKLTAELKARIVAMWEDLRKS
Ga0335078_1256962923300032805SoilIVPVAIEGFYDVWPRSKPFQGFKPLQIAFGDPIAPPPESAASEEAYEKLTADLKARIVEIWEKLRKQA
Ga0316624_1160728423300033486SoilYEAWPRNKPFQKFAPLRMTIGDPILPPPQSAASEEAYEKLTAQLKETVVTMWNELRAGG
Ga0334792_166261_3_1943300033888SoilIEGFYEVWPRSQKFRGFAPLKMVFGDPIYPPPESEASEEAYTKLTADLKARVVAMWEQLRASK


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