NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F093556

Metagenome Family F093556

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F093556
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 53 residues
Representative Sequence MQRPPTINPLPTKLSSNILDSEFNNNVLDTLVPNLVPNLNKLELLGYKV
Number of Associated Samples 23
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 14.15 %
% of genes near scaffold ends (potentially truncated) 29.25 %
% of genes from short scaffolds (< 2000 bps) 51.89 %
Associated GOLD sequencing projects 23
AlphaFold2 3D model prediction Yes
3D model pTM-score0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (50.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza
(61.321 % of family members)
Environment Ontology (ENVO) Unclassified
(61.321 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(56.604 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 31.17%    β-sheet: 0.00%    Coil/Unstructured: 68.83%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.27
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF00078RVT_1 1.89
PF01965DJ-1_PfpI 0.94
PF00400WD40 0.94
PF06999Suc_Fer-like 0.94
PF00005ABC_tran 0.94
PF07727RVT_2 0.94
PF00067p450 0.94
PF05839Apc13p 0.94
PF03060NMO 0.94
PF07992Pyr_redox_2 0.94
PF12776Myb_DNA-bind_3 0.94
PF07690MFS_1 0.94
PF00004AAA 0.94
PF14214Helitron_like_N 0.94
PF04909Amidohydro_2 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0516IMP dehydrogenase/GMP reductaseNucleotide transport and metabolism [F] 0.94
COG2070NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase familyGeneral function prediction only [R] 0.94
COG2124Cytochrome P450Defense mechanisms [V] 0.94
COG4759Uncharacterized conserved protein, contains thioredoxin-like domainGeneral function prediction only [R] 0.94


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms50.00 %
UnclassifiedrootN/A50.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300006797|Ga0066659_10973728Not Available709Open in IMG/M
3300012199|Ga0137383_10717516All Organisms → cellular organisms → Eukaryota → Opisthokonta730Open in IMG/M
3300012200|Ga0137382_10327825Not Available1071Open in IMG/M
3300012200|Ga0137382_10801576Not Available678Open in IMG/M
3300012200|Ga0137382_11349253Not Available502Open in IMG/M
3300012203|Ga0137399_11338012Not Available601Open in IMG/M
3300012205|Ga0137362_11152917Not Available658Open in IMG/M
3300012206|Ga0137380_11360453Not Available595Open in IMG/M
3300012207|Ga0137381_10517967All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum1040Open in IMG/M
3300012207|Ga0137381_11179543All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum658Open in IMG/M
3300012209|Ga0137379_10755531All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum877Open in IMG/M
3300012209|Ga0137379_11051771Not Available719Open in IMG/M
3300012209|Ga0137379_11426085Not Available595Open in IMG/M
3300012209|Ga0137379_11703660Not Available527Open in IMG/M
3300012209|Ga0137379_11728388Not Available522Open in IMG/M
3300012210|Ga0137378_11780391All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum520Open in IMG/M
3300012211|Ga0137377_11022639Not Available757Open in IMG/M
3300012211|Ga0137377_11909482Not Available511Open in IMG/M
3300012211|Ga0137377_11937167Not Available506Open in IMG/M
3300012351|Ga0137386_10534642Not Available844Open in IMG/M
3300012351|Ga0137386_10971434Not Available605Open in IMG/M
3300012351|Ga0137386_11115551Not Available556Open in IMG/M
3300012357|Ga0137384_10502752Not Available995Open in IMG/M
3300012357|Ga0137384_10953357Not Available690Open in IMG/M
3300012357|Ga0137384_11400800Not Available547Open in IMG/M
3300012359|Ga0137385_10572715Not Available951Open in IMG/M
3300012359|Ga0137385_10912934Not Available726Open in IMG/M
3300012359|Ga0137385_11430495Not Available555Open in IMG/M
3300012359|Ga0137385_11455660Not Available549Open in IMG/M
3300012359|Ga0137385_11602579Not Available515Open in IMG/M
3300012582|Ga0137358_10814297Not Available619Open in IMG/M
3300012923|Ga0137359_10690000Not Available890Open in IMG/M
3300015051|Ga0137414_1194079All Organisms → Viruses → Predicted Viral2006Open in IMG/M
3300015051|Ga0137414_1232378Not Available2290Open in IMG/M
3300015051|Ga0137414_1250288All Organisms → Viruses → Predicted Viral1951Open in IMG/M
3300015052|Ga0137411_1295890All Organisms → Viruses → Predicted Viral1548Open in IMG/M
3300019890|Ga0193728_1014966All Organisms → Viruses → Predicted Viral3896Open in IMG/M
3300019890|Ga0193728_1177063Not Available915Open in IMG/M
3300020062|Ga0193724_1109750Not Available553Open in IMG/M
3300021178|Ga0210408_11405375Not Available526Open in IMG/M
3300027884|Ga0209275_10646031Not Available608Open in IMG/M
3300028794|Ga0307515_10001294All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae56855Open in IMG/M
3300028794|Ga0307515_10002331All Organisms → cellular organisms → Eukaryota → Opisthokonta41469Open in IMG/M
3300028794|Ga0307515_10002998All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes35861Open in IMG/M
3300028794|Ga0307515_10003822All Organisms → cellular organisms → Eukaryota → Opisthokonta31495Open in IMG/M
3300028794|Ga0307515_10004404All Organisms → cellular organisms → Eukaryota → Opisthokonta29157Open in IMG/M
3300028794|Ga0307515_10005546All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina25549Open in IMG/M
3300028794|Ga0307515_10007079All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae22280Open in IMG/M
3300028794|Ga0307515_10009722All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes18532Open in IMG/M
3300028794|Ga0307515_10014979Not Available14324Open in IMG/M
3300028794|Ga0307515_10015246All Organisms → cellular organisms → Eukaryota → Opisthokonta14174Open in IMG/M
3300028794|Ga0307515_10016840All Organisms → cellular organisms → Eukaryota → Opisthokonta13360Open in IMG/M
3300028794|Ga0307515_10024008All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes10647Open in IMG/M
3300028794|Ga0307515_10029184Not Available9338Open in IMG/M
3300028794|Ga0307515_10042486All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum7108Open in IMG/M
3300028794|Ga0307515_10046785Not Available6601Open in IMG/M
3300028794|Ga0307515_10053282Not Available5974Open in IMG/M
3300028794|Ga0307515_10091565All Organisms → Viruses → Predicted Viral3797Open in IMG/M
3300028794|Ga0307515_10097206Not Available3601Open in IMG/M
3300028794|Ga0307515_10114018All Organisms → Viruses → Predicted Viral3128Open in IMG/M
3300028794|Ga0307515_10128336Not Available2813Open in IMG/M
3300028794|Ga0307515_10138765All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum2622Open in IMG/M
3300028794|Ga0307515_10161750All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Leotiomycetes2279Open in IMG/M
3300028794|Ga0307515_10170382Not Available2173Open in IMG/M
3300028794|Ga0307515_10179130All Organisms → cellular organisms → Eukaryota → Opisthokonta2077Open in IMG/M
3300028794|Ga0307515_10191592All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum1952Open in IMG/M
3300033179|Ga0307507_10000035All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina188121Open in IMG/M
3300033179|Ga0307507_10000578All Organisms → cellular organisms → Eukaryota78652Open in IMG/M
3300033179|Ga0307507_10000807All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina69353Open in IMG/M
3300033179|Ga0307507_10000812All Organisms → cellular organisms → Eukaryota → Opisthokonta69061Open in IMG/M
3300033179|Ga0307507_10000958All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina64283Open in IMG/M
3300033179|Ga0307507_10001046All Organisms → cellular organisms → Eukaryota → Opisthokonta61623Open in IMG/M
3300033179|Ga0307507_10001550All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina51217Open in IMG/M
3300033179|Ga0307507_10001638All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina49582Open in IMG/M
3300033179|Ga0307507_10001736All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina48003Open in IMG/M
3300033179|Ga0307507_10001784All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes47320Open in IMG/M
3300033179|Ga0307507_10002572All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae37596Open in IMG/M
3300033179|Ga0307507_10002853All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina34997Open in IMG/M
3300033179|Ga0307507_10003896All Organisms → cellular organisms → Eukaryota → Opisthokonta27706Open in IMG/M
3300033179|Ga0307507_10005501All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae20726Open in IMG/M
3300033179|Ga0307507_10006801Not Available17138Open in IMG/M
3300033179|Ga0307507_10007114Not Available16550Open in IMG/M
3300033179|Ga0307507_10009074All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes13403Open in IMG/M
3300033179|Ga0307507_10011036All Organisms → cellular organisms → Eukaryota → Opisthokonta11497Open in IMG/M
3300033179|Ga0307507_10012342All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum10570Open in IMG/M
3300033179|Ga0307507_10012670All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum10379Open in IMG/M
3300033179|Ga0307507_10015920All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum8801Open in IMG/M
3300033179|Ga0307507_10019425Not Available7651Open in IMG/M
3300033179|Ga0307507_10023413All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum6779Open in IMG/M
3300033179|Ga0307507_10029372All Organisms → cellular organisms → Eukaryota → Opisthokonta5830Open in IMG/M
3300033179|Ga0307507_10291676Not Available1009Open in IMG/M
3300033179|Ga0307507_10313058Not Available952Open in IMG/M
3300033179|Ga0307507_10373253All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum826Open in IMG/M
3300033179|Ga0307507_10402312Not Available778Open in IMG/M
3300033179|Ga0307507_10410067All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum766Open in IMG/M
3300033179|Ga0307507_10431855All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum735Open in IMG/M
3300033179|Ga0307507_10470318Not Available687Open in IMG/M
3300033179|Ga0307507_10519869Not Available636Open in IMG/M
3300033179|Ga0307507_10520933All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae → Pleosporomycetidae incertae sedis → Gloniaceae → Glonium → Glonium stellatum635Open in IMG/M
3300033179|Ga0307507_10560227Not Available600Open in IMG/M
3300033179|Ga0307507_10570849Not Available591Open in IMG/M
3300033179|Ga0307507_10617803Not Available556Open in IMG/M
3300033179|Ga0307507_10619374Not Available555Open in IMG/M
3300033179|Ga0307507_10632837Not Available546Open in IMG/M
3300033179|Ga0307507_10677449Not Available519Open in IMG/M
3300033179|Ga0307507_10692536All Organisms → cellular organisms → Eukaryota → Opisthokonta510Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza61.32%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil33.02%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.94%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015052Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020062Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300028794Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EMHost-AssociatedOpen in IMG/M
3300033179Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EMHost-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0066659_1097372813300006797SoilNPLPAGLSSNILDNKFNNDVLDTLVPDLVPNLNELELLGCEV*
Ga0137383_1071751613300012199Vadose Zone SoilINPLSIEPSSNVLDNTFNNNILDTLVPNLVPDLNKLELLGREV*
Ga0137382_1032782513300012200Vadose Zone SoilPAVNPLPAKLSSYILESEFNDNILDTLVPNLVPNLNELELLGYKV*
Ga0137382_1080157613300012200Vadose Zone SoilMQCPPTINPLSVKPSSNVLDNEFDNDVLDTLVPNLVPDLNELELLSHKV*
Ga0137382_1134925313300012200Vadose Zone SoilMQRFTVDPLPVKPSSNIPDSEFDNNILDTLVPNLVPNLNELELLSREV*
Ga0137399_1133801213300012203Vadose Zone SoilPAVNPPPTELSSNIPDGEFNNDVLNTLVPNLVPNLSKLELLGYKV*
Ga0137362_1115291713300012205Vadose Zone SoilLESNSSGLIAYPTAPIQRPPTVNPLPAELSSNILDGEFNNNILDTLVPNLLPNLNKLELLGYKV*
Ga0137380_1136045313300012206Vadose Zone SoilMAHPTAPVQRPPVINPLPAELSSNILDNEFDDDVLDTLVFNLVLDLNELELLGREV*
Ga0137381_1051796733300012207Vadose Zone SoilLESDFSGPTAHPTAPVQRPPVINPLPAELGSNILDNEFDDDVLDTLVFNLVPNLNKLELLGHKV*
Ga0137381_1117954313300012207Vadose Zone SoilLESDFSGLTAHFTAPMQHPPAINPLPAKLGSNILDGEFDDDVLDTLVPDLVPDLDKLELLGHEV*
Ga0137379_1075553113300012209Vadose Zone SoilMNPLSTKLGSNILDSKFNNNILNTLVPNLVPDLNKLKLLGHKV*
Ga0137379_1105177113300012209Vadose Zone SoilESDSSGPTAYPTAPVQCPAVDPLPTELGSNILDGEFDDDVLDTLVPDLVPDFNELELLSREV*
Ga0137379_1142608523300012209Vadose Zone SoilVQCPFAVNPLPVELGSNILDSEFDDNVLDILVPDLVPDLNELELLGREV*
Ga0137379_1170366023300012209Vadose Zone SoilAHPIAPIQYPPTINPLSAKLNSNILDSEFDNNILNTLVLNLVPNLNKLELLSREV*
Ga0137379_1172838813300012209Vadose Zone SoilMQYLTINPLPIKPSSKILDSKFNNNILDTLVPNLVLNLNELELLSRKV*
Ga0137378_1178039113300012210Vadose Zone SoilLESDSSGLTAHPTGFMQRPPAINPLSVKPSSNILDNEFNDDILDTLVPDLVPNLNKLELLGHKV*
Ga0137377_1102263913300012211Vadose Zone SoilMQRFLAVNPLPVELGSNILDSEFNDNVLDTLVPDLVPDFNELELLGHKV*
Ga0137377_1190948213300012211Vadose Zone SoilNKLESNNSAPVECPPAINPLPTELGRNILDGEFNDNILDTLVPNLMPNLNKLELLGHKV*
Ga0137377_1193716723300012211Vadose Zone SoilVQYLPAINPLPAELSSNILDSEFNDNILDILVPNLVPDLNELELLGRKV*
Ga0137386_1053464213300012351Vadose Zone SoilMAHPIAPIQYPPTINPLSAKLNSNILDSEFDNNILNTLVLNLVPNLNKLKLLSYKV*
Ga0137386_1097143413300012351Vadose Zone SoilLESNSSGPTAHPTASVQRPSTINPLSVKPSSNVLDNEFNNNVLDTLIPDLMP
Ga0137386_1111555113300012351Vadose Zone SoilESDFSGPIAHLTTPMQHPPAINPLSTELSSNILDNDFNNNILNTLVPNLVPDLNKLELLGHKV*
Ga0137384_1050275213300012357Vadose Zone SoilMAYPITPMQYPPTINPLSIKLSSNILDNKFNVNILDTLIPNLVPDLNKLELLGYKV*
Ga0137384_1095335713300012357Vadose Zone SoilLVFTDNSAPVQRPFTVNPLPIKPSSNILDSEFDDNILDTLVPNLVFNLNKLKLLSYKV*
Ga0137384_1140080013300012357Vadose Zone SoilNPLPIETSSNIPDGEFDNNILNTLVPNLVPDLNKLELLSHKA*
Ga0137385_1057271513300012359Vadose Zone SoilNSAPMQRFTVDPLPVKPSSNIPDSEFDNNILDTLVPNLVPNLNELELLSREV*
Ga0137385_1091293423300012359Vadose Zone SoilSSNIPNNKFDNDILDTLVPDLVPNFNKLELLNHEVQY*
Ga0137385_1143049513300012359Vadose Zone SoilFTINPLFTKLGSNILDNKFNNNVLDTLVPNLVPNLNELELLSREV*
Ga0137385_1145566013300012359Vadose Zone SoilPLPAKLGSNILDNEFNNNVLDTLVPNLVPDLTKLELLGHEV*
Ga0137385_1160257913300012359Vadose Zone SoilLYINESKFDNSVLMQHPLAINPLPIKLCSNILDGEFNDNILDILVPNLMLDLNKLKLLGHKV*
Ga0137358_1081429713300012582Vadose Zone SoilPYINESESNNSAPIQYPPTINPLPVELSSNILNSEFNNNILNTLVPNLVPNLNKLELLGREV*
Ga0137359_1069000013300012923Vadose Zone SoilLESNSSSPTAYPTTPIQRPPAINPLPAKPTKLSSNILDGEFNDDVLDTLVPNLVPNLNKLELLGCKV*
Ga0137414_119407913300015051Vadose Zone SoilMAYPTTPIQRPPAINPLPTKPAKLSSNIPDGEFNNNVLDTLVPNLVPNLNKLELLGREV*
Ga0137414_123237813300015051Vadose Zone SoilNPLPTKLSSNILDNKFDDDVLDTLVPNLVPNLTKLKLLGCEV*
Ga0137414_125028813300015051Vadose Zone SoilMQRPPTINPLPTKLSSNILDSEFNNNVLDTLVPNLVPNLNKLELLGYKV*
Ga0137411_129589013300015052Vadose Zone SoilINPLPTKLGSNIPDGEFNNDILDTLVPNLVPNLNKLELLGCKA*
Ga0193728_101496623300019890SoilLESNSSGPTAYPTAPMQRPPAVDPLPTELGSNILDGEFNDDVLDTLVPNLVPNLSELELLGCEV
Ga0193728_117706313300019890SoilRPPTINPLPTKLSSNILDGEFDNNVLDTLVPNLVPNLTKLELLGCKV
Ga0193724_110975013300020062SoilPTARPTAPIQRPPTINPLPTELGSNILDGEFNNDVLDTLVPNLVPNLNKLELLGCKV
Ga0210408_1140537513300021178SoilPLPIKPSSNILDSKFDDNILNTLVLDLVPDLNKLELLSRKVQH
Ga0209275_1064603113300027884SoilSNFSSLIAYLIAPMQYPSAVNLLPAELGSNILDSEFNNNILKTLIPNLIPNFNILNFLSREVYY
Ga0307515_1000129463300028794EctomycorrhizaMGNSAPMQRPPIINPLAVKPSSDILDSEFDGDVLDTLVSNLVPNLNKLELLSREV
Ga0307515_1000233113300028794EctomycorrhizaMQRPPVINPLPTKLGSNILDGEFNDDVLDTLVPNLVPNLNELELLGCEV
Ga0307515_10002998113300028794EctomycorrhizaMAYPTTPIQRPPTINPLSTKLSSNILDNKFNNNILDTLVPNLVPNLNKLELLGCKV
Ga0307515_1000382213300028794EctomycorrhizaMAYPTTSIQCPTINPLPTELASNILDGEFNNNVLDTLVPNLVPNFNKLELLGCKV
Ga0307515_1000440443300028794EctomycorrhizaMAYPTASMQYPYAINPLPTKLGSNILDGEFNNDILDTLVPNLVPNLNELELLGREV
Ga0307515_10005546273300028794EctomycorrhizaMQRPSAINPLPTKLSSNILDGKFNDDVLDTLVPNLVPNLTKLELLGCEV
Ga0307515_1000707913300028794EctomycorrhizaMQCPPAINPLPTKLSSNILDGKFDNNILDTLVPNLVPNLNKLELLSREV
Ga0307515_10009722183300028794EctomycorrhizaMAYPTAPIQHPPAIDSLPAKLGSNILDGEFNDDILDTLVPNLVPNLSKLELLGRKV
Ga0307515_1001497913300028794EctomycorrhizaMQRPPIINPLFAELSSNILDNEFNNNILNTLVPNLVLNLNKLELLGCEV
Ga0307515_1001524633300028794EctomycorrhizaMAYPTTSIQRPPAISPLPTELSSNILDGEFNNNVLDTLVPNLVPNLSELELLGREV
Ga0307515_1001684033300028794EctomycorrhizaMQRPPTINPLPTEFSSNVLDSEFNNDILDTLVPNLVPNLNKLELLGREV
Ga0307515_1002400863300028794EctomycorrhizaMQYPFAINPLPTKLGSNILDSKFDNNVLDTLVPNLVPNLNELELLGCEV
Ga0307515_1002918413300028794EctomycorrhizaMQRPYIINPLPTKLSSNILDGEFNNNVLDTLVPNLVPNLSKLKLLGREV
Ga0307515_1004248623300028794EctomycorrhizaMQCPAVNPLPTKLSTNIPDGKFNNDVLDTLVPNLVPNLNKLELLGREV
Ga0307515_1004678523300028794EctomycorrhizaMQRPPAINPLPAELGSNILDGEFNDDVLDTLVLNLVPNLNKLELLGCKV
Ga0307515_1005328253300028794EctomycorrhizaMQYPAINPLPAKLGTNIPDGKFNNNVLDTLVPNLVPNLNKLELLGCEV
Ga0307515_1009156513300028794EctomycorrhizaMQRPLVINLLPTKLSSNILDSEFNDDILDTLVPNLVPNLNELELLGREV
Ga0307515_1009720613300028794EctomycorrhizaMQRPPAINPLPTKLSSNILDGKFNNNVLNTLVPNLVPNFNELELLGRKV
Ga0307515_1011401813300028794EctomycorrhizaMQRPLTINSLPTKLGSNILDGEFNNNVLDTLVPNLVPNLNKLELLSREV
Ga0307515_1012833623300028794EctomycorrhizaMQRPAVNPLLAELSSNIPDGEFNNDVLDTLVPNLVPNLNELELLGREV
Ga0307515_1013876513300028794EctomycorrhizaMAYPTAPIQHPPTINPLPTKLSSNILDGEFNNNVLDTLVPNLVPNLSKLELLGGEV
Ga0307515_1016175013300028794EctomycorrhizaMQRPPTINPLPTKLGSNILDGEFNNNVLDTLVPNLVPNLNKLKLLGCEV
Ga0307515_1017038213300028794EctomycorrhizaMQRLPIINPLLIEPSSDILDGEFDDDILDTLVLNLVPNLDKLGLLSRKV
Ga0307515_1017913023300028794EctomycorrhizaMQRPPTINPLPTELGSNILDSEFNDDILDTLVPNLVPNLNKLELLGCKV
Ga0307515_1019159223300028794EctomycorrhizaMQRPPAINPLPAELGSNILDSKFNNDVLDTLVPNLVPNLNKLELLGREV
Ga0307507_1000003553300033179EctomycorrhizaMQYPPAINPLPTELSSNILDSEFDNDVLNTLVPNLVPNFNKLELLSREV
Ga0307507_10000578143300033179EctomycorrhizaMAYPTAPIQHPPNINPLPTELGSNILDSEFNNNVLDTLVPNLVPNLNKLELLGHEV
Ga0307507_10000807193300033179EctomycorrhizaVQRPPAINPLPAKLGSNILDGEFNNNILDTLVPNLIPNLNKLELLGREVQHQ
Ga0307507_10000812113300033179EctomycorrhizaMQHPPAINPLPAKLSSNILDSKFDDNVLDTLVPNLVPNFNKLELLSCKV
Ga0307507_10000958633300033179EctomycorrhizaMQRPPAINPLPAELSSNILDGKFNNDVLDTLIPDLVPDFNKLELLGREV
Ga0307507_1000104633300033179EctomycorrhizaMAYSTAPIQCPAVNPLPAELNSNILDGEFNNNVLDTLVPNLVPNLNKLELLSREVQYQQG
Ga0307507_10001550133300033179EctomycorrhizaVQYSPAINPLPAKLGSNILDSKFDNDILDTLVPNLVPNLNKLELLGCEVQY
Ga0307507_1000163813300033179EctomycorrhizaMGNSASVQCPSTIDPLPVEPSSDILDGEFDNNILDTLVPNLVPNLNKLELLSREV
Ga0307507_10001736143300033179EctomycorrhizaMQHPPTINPLPAELGSNILDSEFDNDILDTLVLNLVPNLNKLELLGREV
Ga0307507_10001784123300033179EctomycorrhizaLESDSSGLTAYPTAPVQYPPAINPLPTELGSNILDSEFDDNVLDTLVPNLVPNLNELELLGREV
Ga0307507_1000257283300033179EctomycorrhizaVQRPPTVDPLPVEPSSDILDGEFNDNILDTLVPDLVPNLNELELLSREVQQ
Ga0307507_1000285363300033179EctomycorrhizaMAYPTTPIQYSFAINSLPTKLGSNILDSKFNNNVLNTLVPNLMPNFNKLELLGYKV
Ga0307507_10003896123300033179EctomycorrhizaMAYPTAPMQYPPAINPLPAELGSNILDSEFNDDILDTLVPDLVPNLNKLELLGREV
Ga0307507_1000550133300033179EctomycorrhizaLESDSSGLTAYPTAPVQHPPAINPLPAELGSNILDSEFDNNVLDTLVPNLVPNFNKLELLSCEV
Ga0307507_1000680133300033179EctomycorrhizaMAYPTTPVQRPPTIDPLPAELGSNILDGEFNDDILDTLVPDLVPDFNKLELLGCEV
Ga0307507_1000711493300033179EctomycorrhizaMQRPPTVNPLPIKPSSNILDGEFDNNILDTLVSDLVPNLNKLELLSREV
Ga0307507_10009074103300033179EctomycorrhizaMQYSPAINPLPTKLSSNILDSEFNNNVLDTLVPNLVPNFNKLELLSCEV
Ga0307507_1001103663300033179EctomycorrhizaVQHPPTVNPLPVEPSSDILDGEFDNNILDTLVPNLVPNLNELELLSREV
Ga0307507_1001234273300033179EctomycorrhizaMQYPPAINPLPAELGSNILDSEFNDNILNTLVPDLVPNFNKLELLSREV
Ga0307507_1001267053300033179EctomycorrhizaMQRPPAIDPLPAELGSNILDGEFNNDVLDTLVPDLVPNFNKLELLGCEVQH
Ga0307507_1001592023300033179EctomycorrhizaMAYLTTPVQRPSTLPTELGSNVLDSEFNNNVLDTLVPNLVPNLNKLELLGREV
Ga0307507_1001942543300033179EctomycorrhizaMQYPPAINPLPAELGSNILDSEFDNNILDTLVPNLVPNFNELELLSREV
Ga0307507_1002341333300033179EctomycorrhizaMGNSAPVQRPFTVDPLPVKPSSDILDGEFDNNVLDTLVPNLVPNLNKLELLSCEV
Ga0307507_1002937213300033179EctomycorrhizaMQYPPAINPLPTELGSNILDSEFNNDVLDTLVPNLVPNFNKLELLSREVQH
Ga0307507_1029167623300033179EctomycorrhizaLESDSSGLMTHPTAPVQCPPAIGPLPAELGSNVLDSEFDDDVLDILVPDLVPDFNELELLGCEVQHQQDL
Ga0307507_1031305813300033179EctomycorrhizaPTTSIQHPPAINPLPIKLGSNILDGEFNNNILDTLVPNLVPNLSKLELLGCEV
Ga0307507_1037325313300033179EctomycorrhizaMQYPYAVNPLPAKLGSNILDGEFDDNILDTLVPNLVPNLNKLELLGCEV
Ga0307507_1040231213300033179EctomycorrhizaMQHLFAIDFLPAEFGSNILDGKFDDNVLDILIPDLVPDFNKLEL
Ga0307507_1041006713300033179EctomycorrhizaVQHPPTVNPLPAELGSNILDNKFDNDILNTLVPDLVPDFN
Ga0307507_1043185513300033179EctomycorrhizaLESDSSGLMAHPTTPVQCPPAVDPLFAELSSNILDGEFDDDVLDTLVPDLVPDFNKLELLGCEV
Ga0307507_1047031813300033179EctomycorrhizaLEFNSSGLIAYPTTSIQHPPTINPLPTKLGSNILDSKFNNNVLNTLVPNLVPNLSKLELLGYEV
Ga0307507_1051986913300033179EctomycorrhizaMAYPTTPIQHPPAINPLPTKLSSNILDGEFNNNILDTLVPNLVPNLSKLELLGCKV
Ga0307507_1052093313300033179EctomycorrhizaLESDSSGPTAYPTAPVQHPPAIDPLPAKLGSNIPDSEFNDDVLDILVPDLVPNLSKLELLDYKIQH
Ga0307507_1056022713300033179EctomycorrhizaMQRPSTINSLPIELSSNILDSEFNNNVLDTLVPNLVPNLNKLERLGREV
Ga0307507_1057084913300033179EctomycorrhizaDSSGPMAYLTTPIQRSPTNSLPTELGSNILDSKFNNNVLDTLVPNLVPNLNKLKLLGREV
Ga0307507_1061780313300033179EctomycorrhizaVQRPSALPAKLGSNVLDGKFDDDVLDTLVPDLVPDLNELEL
Ga0307507_1061937413300033179EctomycorrhizaPYINKSESNSSGPTAYPTTPIQRPTINPLSTKLSSNILDGEFNNNILDTLVPNLVPNLNKLELLGCKV
Ga0307507_1063283713300033179EctomycorrhizaYPFIINPLPIDLSSNILDAKFNNNILDILVPNLVLNFNKLELLSCKV
Ga0307507_1067744913300033179EctomycorrhizaTAYPTTPIQRPPTINPLSAKLSSNILDNKFNNNILNTLVPNLVPNLNKLELLGREV
Ga0307507_1069253613300033179EctomycorrhizaLESNNSAPIQRPPTINPLPAKLGSNILDGEFNDNILDTLVPNLVPNLNKLELLGCEV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.