Metagenome / Metatranscriptome Family F093927

Basic Information
Family ID	F093927
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	72 residues
Representative Sequence	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGA
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (13.207 % of family members)
Environment Ontology (ENVO)	Unclassified (49.057 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (59.434 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.76% β-sheet: 0.00% Coil/Unstructured: 41.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF03551	PadR	86.79
PF07519	Tannase	6.60
PF12867	DinB_2	3.77
PF13180	PDZ_2	0.94
PF13637	Ank_4	0.94
PF02623	FliW	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	86.79
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	86.79
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	86.79
COG1699	Flagellar assembly factor FliW	Cell motility [N]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	49.06%
Host-Associated	Host-Associated	49.06%
Engineered	Engineered	1.89%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	49.06%
Terrestrial	Environmental → Terrestrial	46.23%
Aquatic	Environmental → Aquatic	2.83%
Bioremediation	Engineered → Bioremediation	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	46.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.13%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.04%
Sediment	Environmental → Aquatic → Sediment	1.89%
Roots	Host-Associated → Plants → Roots	1.89%
Metal	Engineered → Bioremediation → Metal	1.89%
Freshwater	Environmental → Aquatic → Freshwater	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.26%
Loam	Environmental → Terrestrial → Soil → Loam	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.89%
Unclassified	Engineered → Bioremediation → Metal → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.15%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	13.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.89%
Unclassified	Engineered → Bioremediation → Metal → Unclassified → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	13.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.89%
Sediment Slurry	Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry	1.89%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009609	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011443	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT630_2	Environmental	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300023263	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S092-311B-6	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027360	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 PM (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034075	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A4A4.2	Engineered	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034675	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034692	Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3	Engineered	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062592_1016301181	3300004480	Soil	MSPSTLALSQRILARLMPPAQAEALVGDLLEECRLRLQAGSHVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYVAAVGIQFV
Ga0066810_100424451	3300005169	Soil	MSLSTLAASQWILARLMPPAQAEALIGDLLQERRLRLQAGSHVSVAGWYWRQLASSVPVLLWASMRRGA
Ga0065705_102463813	3300005294	Switchgrass Rhizosphere	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTL
Ga0070690_1001552074	3300005330	Switchgrass Rhizosphere	MSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVP
Ga0070670_1003512441	3300005331	Switchgrass Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGAWLI
Ga0070670_1004051731	3300005331	Switchgrass Rhizosphere	MSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWCWRQLASSVPALLWASVRRG
Ga0066388_1074858431	3300005332	Tropical Forest Soil	MRPSTIALSQRILARLMPPAHAEALLGDLLEERRLRLRAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYIAA
Ga0068868_1007419161	3300005338	Miscanthus Rhizosphere	MSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPALLWASVRR
Ga0070689_1005723363	3300005340	Switchgrass Rhizosphere	MSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLIT
Ga0070689_1014217511	3300005340	Switchgrass Rhizosphere	MSPSTLLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASSLPVLIWASM
Ga0070661_1013963342	3300005344	Corn Rhizosphere	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLAS
Ga0070669_1002278713	3300005353	Switchgrass Rhizosphere	LRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASSLPVLIWASMYRRSSFLTLVIAVAS*
Ga0070669_1011254862	3300005353	Switchgrass Rhizosphere	MSPLTLALSQRILARLMPPAQAEALLGDLLEECRLRLRVESPASATRWYWMQLVSSM
Ga0070675_1021728082	3300005354	Miscanthus Rhizosphere	MSPSTLALSQRILERLMTPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSV
Ga0070673_1002218434	3300005364	Switchgrass Rhizosphere	MSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPVL
Ga0070700_1000712691	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVR
Ga0070708_1018341571	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSPSTIALSQQILARLMPPARAEALLGDLLEECRLRLQAGSHVSVAGWYSRQLASSVSILLWASMRRGAWLVTVVTAVASYIAA
Ga0070672_1005846881	3300005543	Miscanthus Rhizosphere	MSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSQASVAGWYWRQLASSVSALLWASVRRGAWLVTVVTAVASFIAAIGIQMLL
Ga0070672_1021547371	3300005543	Miscanthus Rhizosphere	MSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYV
Ga0068852_1027527131	3300005616	Corn Rhizosphere	MSLSTLVVSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVR
Ga0068859_1023408271	3300005617	Switchgrass Rhizosphere	MSPSTLLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASS
Ga0066905_1022894611	3300005713	Tropical Forest Soil	MSPSTLALSQRILARLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVA
Ga0068861_1002663001	3300005719	Switchgrass Rhizosphere	MSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPAL
Ga0068858_1001363525	3300005842	Switchgrass Rhizosphere	MSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRG
Ga0068858_1014710742	3300005842	Switchgrass Rhizosphere	MSPSTIALSQWILARLMPPADAEALLGDLLEELRLQAGSHVSVAGWYWRQLASSV
Ga0075432_101961173	3300006058	Populus Rhizosphere	MSPSTIAISQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSVLLWASM
Ga0068871_1012713092	3300006358	Miscanthus Rhizosphere	MSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWCWRQLASSVPALLWASVRRGAWLIT
Ga0075431_1009388111	3300006847	Populus Rhizosphere	VTPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSV
Ga0075433_101089835	3300006852	Populus Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASY
Ga0079218_100650481	3300007004	Agricultural Soil	MSGSTLALSQRILALLMPPAQAEALLGDLLEERRLRLQAGSHVSVAGWYWMQLASSLPVLLWASVRRGAWLITVVTAVAS
Ga0105240_117733062	3300009093	Corn Rhizosphere	MSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSHVNVAGWYWRQLASSVPVLLWASMRRGVWL
Ga0075418_111587742	3300009100	Populus Rhizosphere	VEARVTPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVASYIAA
Ga0105247_103043511	3300009101	Switchgrass Rhizosphere	MSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPVLLWASMRRGAWLVSVVTAVAS
Ga0114129_130709541	3300009147	Populus Rhizosphere	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTLVIAV
Ga0105249_105020463	3300009553	Switchgrass Rhizosphere	MSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPVLLWA
Ga0105249_113450193	3300009553	Switchgrass Rhizosphere	MSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLASSLPVLLWASLHCRSSFLT
Ga0105249_128033072	3300009553	Switchgrass Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVV
Ga0105347_13172261	3300009609	Soil	MSPSTLALSERILARLMPPAQAEALVGDLLEECRLRLQAGSHVSVAGWYSRQLASSVSV
Ga0126382_104178623	3300010047	Tropical Forest Soil	MSPSTLVRVQWILASLMPSDRAEALLGDLLEERRLRLHAGSQASVARWYWMQLAWSLPFLLRASLQRRSSFLTLGI
Ga0134127_115502152	3300010399	Terrestrial Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVA
Ga0134127_117490412	3300010399	Terrestrial Soil	MSPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVA
Ga0134123_125552891	3300010403	Terrestrial Soil	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRS
Ga0105246_106737421	3300011119	Miscanthus Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWIQLASSLPVLIWASMYRRSSFLTLVIAVASYLAVGGVAFVLRTAL
Ga0137457_11545881	3300011443	Soil	MSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWCWRQLASSVPALLWASVRRGAWLITVVTAVASCIAAFCIQF
Ga0157334_10223872	3300012509	Soil	MSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVSALLWASVRRGAWL
Ga0157332_10424822	3300012511	Soil	MSPSTLVRVQCILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTLVIAVASYLAAG
Ga0157309_102590561	3300012895	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASY
Ga0157295_103609311	3300012906	Soil	MSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYVAAVGIQFVLWSAL
Ga0137410_106280171	3300012944	Vadose Zone Soil	MSLSTLAVSQWTLARLMPPAQAEALIGDLLEERRLRLQAGSHVRVAGWYWRQLASSVPALLCASVRRGAWLITV
Ga0164300_104628551	3300012951	Soil	MSPSMIVLSQRILARLMPPAHAEALLGDLLEECRLRLRAESPASATRWYWMQLASS
Ga0157371_108913892	3300013102	Corn Rhizosphere	MSPSTLVRVQWILTLLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLYRRSSLLTL
Ga0157378_100747211	3300013297	Miscanthus Rhizosphere	MSPSTIALSQQILARLMPPARAEALLGDLLEECRLRLQAGSHVSVAGWYWRQLASSV
Ga0163162_120540161	3300013306	Switchgrass Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGA
Ga0157375_128435791	3300013308	Miscanthus Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSV
Ga0163163_108264661	3300014325	Switchgrass Rhizosphere	MSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVTGWYWRQLASSVPVLLWASM
Ga0157379_120152741	3300014968	Switchgrass Rhizosphere	MSLSTLALSQWILARLMPPAHAEALLGDLLEERRLRLHAGPHVSVAGWYWRQLASSVPALLWASVRR
Ga0157376_101918753	3300014969	Miscanthus Rhizosphere	MSPSTIALSQRILAQLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASYIAAAGIQFVL
Ga0132257_1031218592	3300015373	Arabidopsis Rhizosphere	MSPSTIALWQRILARLMPPAQAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASS
Ga0132255_1056713831	3300015374	Arabidopsis Rhizosphere	MSPSTIALSQRVFARLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPALLWASMRRGAWLVSVVTAVASFIAAVG
Ga0163161_103389762	3300017792	Switchgrass Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASFIAAIGIQMLL
Ga0190274_110785013	3300018476	Soil	MSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPALLWASVRRGAWLITVV
Ga0180113_12384902	3300020065	Groundwater Sediment	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLW
Ga0247797_10692452	3300023057	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPTLLWA
Ga0247800_10797611	3300023263	Soil	MSPSTLALSQRILALLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRR
Ga0207673_10614951	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	MSLSTLALSQWIFARLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASVRRGAWL
Ga0207662_100230731	3300025918	Switchgrass Rhizosphere	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWAS
Ga0207681_111455712	3300025923	Switchgrass Rhizosphere	MSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLASSLPVLLWASLHRRSSFLTLVIA
Ga0207701_101437651	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGA
Ga0207690_113185742	3300025932	Corn Rhizosphere	MSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLAS
Ga0207709_103181273	3300025935	Miscanthus Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAV
Ga0207670_105834541	3300025936	Switchgrass Rhizosphere	MSPSTIALSQRILAWLMPPAHAEALLGDLLEERRLRLQAGSQVSVGGWYWRQLASS
Ga0207704_111055681	3300025938	Miscanthus Rhizosphere	MSPSTLVRVQWVLEWFMPSGRAEALLGDLLEERRLRLHVGSPASVARWYWKQLASSLPVLLWASLHRRSS
Ga0207711_121350082	3300025941	Switchgrass Rhizosphere	MSPSTIALSQRILAQLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASS
Ga0207661_106393461	3300025944	Corn Rhizosphere	MIPSTLALSQRIFERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQLASSVPALLWASIRRGAWLVTVVTAVASFIAAIG
Ga0207651_107511823	3300025960	Switchgrass Rhizosphere	MSLSTLAASQWILARLMPPAQAEALIGDLLEERRLRLQAGSHVSVAGWYWRQLASSVPVLLWASMRRGAWLVSVVTAVASFIAA
Ga0207703_117618182	3300026035	Switchgrass Rhizosphere	MSLSTLVVSQWIFARLMPPARAEALLGDLLEERRLRLQAGSQASVAGWYWRQLASSVSALLWASVRRGAWLVTVVTAVGS
Ga0207648_108878243	3300026089	Miscanthus Rhizosphere	MSPSTLVRVQWVLEWFMPSGRAEALLGDLLEERRLRLHVGSPASVARWYWKQLASSLPVLLWAS
Ga0207676_112550622	3300026095	Switchgrass Rhizosphere	MSPSTIALSQQILARLMPPAHAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVAS
Ga0207674_101711531	3300026116	Corn Rhizosphere	MSPSTLLRAQWLLTWLMPSAYAEALLGDLLEERRLRLDAGSPAGVARWYWIQLASSLPVLIWASMYRRSSFLTLVIAVASYLA
Ga0209969_10443882	3300027360	Arabidopsis Thaliana Rhizosphere	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTAVASYVAANGIQFVLWSALS
Ga0247819_104626541	3300028608	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTL
Ga0247825_113537902	3300028812	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAESQVSVAGWYWRQFASSVPALLWASVRRGAW
Ga0307408_1002049473	3300031548	Rhizosphere	MSPSTIALSQRILSRLMPPAQAEALLGDLIEERRLRLKAGSHVSVAGWYWRQLASSVPTLLWASVRRGAWLITVVTAVASYVAAVG
Ga0307408_1021333942	3300031548	Rhizosphere	MSPWTLALSQRILARLMPPAQAEALLGDLLEECRLRLQAGSHVSVAGWYSRQLASSVSVLLWASMRRGAWLVTVVTAVASFIAALGIQLVLG
Ga0310886_107607262	3300031562	Soil	MSPSTLVRVQWILACLMPSARAEALLGDLLEERRLRLHVGSPARVARWYWMQLASSLPVLLWASLHRRSSFLTLVIAV
Ga0310813_119058342	3300031716	Soil	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWVSLYRRS
Ga0310813_122956661	3300031716	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSEVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVASYVAANGIQFV
Ga0307469_100669024	3300031720	Hardwood Forest Soil	MSPSTIALSQRILARLMPPAHAEALLGDLLEERRLRLQAGSHVSVAGWYWRQLASSVSALLWASVRRGAWLITVV
Ga0310892_107352871	3300031858	Soil	MSPSTLVRVQWVLEWFMPSGRAEALLGDLLEERRLRLHVGSPVSVARWYWKQLASSLPVLLWASLHR
Ga0310893_100447663	3300031892	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVT
Ga0310893_105443541	3300031892	Soil	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASS
Ga0310901_100045171	3300031940	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWAS
Ga0310885_102962691	3300031943	Soil	MSPSTLVRVQWILTWLMPSAYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLAVLLW
Ga0310903_100055891	3300032000	Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASS
Ga0310902_100183994	3300032012	Soil	MSPSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQFASSVPTLLWASVRRGAWLITVVTAVASYVA
Ga0315912_106706841	3300032157	Soil	MSSSTLLRVHWMLTWLMPSPYAEALLGDLLEERRLRLHVSSPTSVARWYWMQLASSLPVLLWASLCRRSSLLT
Ga0315912_111310272	3300032157	Soil	MEARMNPSILVRMQGILAWLMPSAHAEALLGDLLEERRLRLHVSSPASVARWYWMQLASSLPVLLWASLQRRFSFFTLVAAIASYF
Ga0307471_1038318871	3300032180	Hardwood Forest Soil	MSPSTLALSQRILERLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLWASVRRGAWLITVVTA
Ga0307472_1016059461	3300032205	Hardwood Forest Soil	MSPSTIALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSHVNVAGWYWTQLASSVPVLLWASVRRGAWLIPVVTAVASYIAAAGIQLALGYS
Ga0247829_110501221	3300033550	Soil	MSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSALLWASVRRGAWLI
Ga0373895_060476_310_576	3300034075	Sediment Slurry	MSPSTLALSERILARLMPPAQAEALVGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASYVAANGIQF
Ga0314780_170097_322_549	3300034659	Soil	MSPSTLALSQRILARLMPPAQAEALVGDLLEERRLRLQAGSHVSVAGWYWRQLASSVSALLWASVRRGAWLITVVT
Ga0314782_207450_324_509	3300034661	Soil	MSGSTLALSQRILALLMPPAQAEALLGDLLEEGRLRLQAGSQVSVAGWYWRQFASSVPTLLW
Ga0314800_067067_1_258	3300034675	Soil	MSGSTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVSALLWASVRRGAWLITVVTAVASYIAATG
Ga0373917_0085948_302_526	3300034692	Sediment Slurry	MSPLTLALSQRILARLMPPAQAEALLGDLLEERRLRLQAGSQASVAGWYWRQLASSVPALLWASVRRGAWLITVV
Ga0373948_0128945_2_187	3300034817	Rhizosphere Soil	MSPSTIALSQRILAWLMPPAQAEALLGDLLEERRLRLQAGSQVSVAGWYWRQLASSVPALLW

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093927

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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