NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093946

Metagenome / Metatranscriptome Family F093946

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093946
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 64 residues
Representative Sequence MGLADKLGLKKEQTKNPNEVTLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKLK
Number of Associated Samples 77
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 74.51 %
% of genes near scaffold ends (potentially truncated) 16.98 %
% of genes from short scaffolds (< 2000 bps) 64.15 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (53.774 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh
(26.415 % of family members)
Environment Ontology (ENVO) Unclassified
(50.943 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(83.962 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 38.04%    β-sheet: 0.00%    Coil/Unstructured: 61.96%
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51015202530354045505560MGLADKLGLKKEQTKNPNEVTLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKLKSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
46.2%53.8%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Freshwater
Marine
Marine
Seawater
Aqueous
Seawater
Sackhole Brine
Marine
Marine
Estuarine
Salt Marsh
Marine
Marine
Estuarine Water
Pelagic Marine
Seawater
Pelagic Marine
Seawater
Pond Water
Saline
Saline Water And Sediment
Marine Methane Seep Sediment
Marine
Macroalgal Surface
7.5%6.6%2.8%26.4%3.8%2.8%21.7%2.8%6.6%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BBAY92_1008343813300000947Macroalgal SurfaceMSLHKRLGLSSKETQSEKEVTLKLTKGELEALLIGLGEATFKGKQVESVFKLAMKLQNEVKK
BBAY92_1227112323300000947Macroalgal SurfaceMSLHKRLGLKNSNVESKTQNDKEVNLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQMEIEKLK*
M2t6BS2_119291623300002132MarineMGLQERLGLKAKDTTNPNEGTIKLTKSELEALIVGLGEATFKGKQVESVFRLAIKLQDELKKLK*
B570J40625_10000041523300002835FreshwaterMGLAQKLGLKKEEPTNNPNEATLKLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQDELRKLQ*
Ga0055584_10150449523300004097Pelagic MarineMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK*
Ga0055584_10204008613300004097Pelagic MarineMGLASKFGLKKEQPKNSNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAIKLQDELKKFN*
Ga0066605_1029217223300004279MarineMSLHEKLRLKPKKKEVNPNETNVSLTKGELEALIMGLGEATFKGKQVESVFKLAVKLQDQLQKMK*
Ga0065726_1875013300004369SalineMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQEELKKIK*
Ga0066224_124529723300004457MarineMSLQSRLGLGKKENSNTEATLKLTKNELEALLVGLGEATFKGKQVESVFKLAIKLQDEIKRLS*
Ga0074648_1002253113300005512Saline Water And SedimentMGLHEKLGLTRNSKKPQTDNEVNLKLTKGELEALLIGLGEASFKGKQVESVYKLAIKLQMEIEKLKKQ*
Ga0074648_106797023300005512Saline Water And SedimentMSLHKRLGVKSNVESKTQTEKEVNLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK*
Ga0076920_10507333300005732MarineMSLHKRLGLKPNVESKTQNDKEVTLKLTQGELEALLIGLGEATFKGKQVESVYKLAVKLQIEIEKLK*
Ga0076923_10572423300005735MarineMIKRLFMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGRQVESVYKLVVKLQMEIEKLK*
Ga0076923_12001823300005735MarineMSLQDKLGLKKKDPNKAYLELTKDELESLIVGLGEATFKGKQVESVFKLAVKLQSELKKLK*
Ga0076924_102315723300005747MarineMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGRQVESVYKLVVKLQMEIEKLK*
Ga0075502_102794933300006357AqueousMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQE
Ga0075502_156614623300006357AqueousMSLHKRLGLSSKETQSEKEVTLKLTKGELEALLIGLGEATFKGKQVESVFKLAMKLQNEAKKLS*
Ga0075507_155869423300006392AqueousMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQ
Ga0075506_180673123300006401AqueousMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKIK*
Ga0098048_100101763300006752MarineMSLHKKLGLSNNKTQNDKEGTLKLTKGELESLLIGLGEASFKGKQVESVFKLAMKIQNEIKKLS*
Ga0098048_113749323300006752MarineMGLHEKLRLKPKKKQVNPNEANVSLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQDELQKMK*
Ga0098055_111260113300006793MarineMGLHEKLRLKPKKKQVNPNEANVSLTKGELEALIIGLGEAT
Ga0070749_1035655323300006802AqueousMSLHKKLGLANDTPNDNEVILKLTKGELEALLIGLGEASFRGKQVEAVYKLAIKLQTELDKFKK*
Ga0098045_100091243300006922MarineMLKRLYMSLHKKLGLSNNKTQNDKEGTLKLTKGELESLLIGLGEASFKGKQVESVFKLAMKIQNEIKKLS*
Ga0099849_123060023300007539AqueousMGLADKLGLKKEQTKNPNEVTLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKLK*
Ga0099847_105749823300007540AqueousMLKRLYMSLHKRLGLSSKETQSEKEVTLKLTKGELEALLIGLGEATFKGKHVESVFKLAMKLQNEVRKLS*
Ga0102945_100145133300007609Pond WaterMSLQDKLGLKKKDPNRAYLELTKDELESLIVGLGEATFKGKQVESVFKLAVKLQNELKKLK*
Ga0102960_100073693300009000Pond WaterMSLQQRLGLKKETKKDNEVTLKLTKGELEALLIGLGEASFKGRQVESVYNLAVKLQVELERLNK*
Ga0102960_123807023300009000Pond WaterMSLHKRLGVKPDTTQKDKEVTLKLTKGELEALLIGLSEDSFKGRQVESVYNLAVKLQVELEKLNK*
Ga0102963_100175793300009001Pond WaterMSLQQRLGLKKETKKDNEVTLKLTKGELEALLIGLGEASFKGRQVESVYNLAVKLQVELEKLNK*
Ga0102963_115453023300009001Pond WaterMSLHKRLGVKPDSTQKDKEVTLKLTKGELEALLIGLGEASFKGRQVESVYNLAVKLQVELEKLNK*
Ga0102957_105153623300009027Pond WaterMGLADKLGLKKEETKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKIK*
Ga0115566_1001641443300009071Pelagic MarineMIKRLFMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK*
Ga0102812_1080581813300009086EstuarineMSLQDKLGLKRKDPNKAYIEFTKDELESLIVGLGEATFKGKQVESVFKLAVKLQSELKKLK*
Ga0115545_104067233300009433Pelagic MarineMIKRLYMSLHKRLGVKSNVESKTQTEKEVNLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQIEIEKLK*
Ga0115545_124300723300009433Pelagic MarineMIKRLFMSLHKRLGVKSNVESKTQTEKEVNLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK*
Ga0115571_105422913300009495Pelagic MarineMSLHKRLGLSSKETQNDNEVTLKLTKGELESLHIGLGEDTFKGKQDESVFKLVVKIQNELSK
Ga0115571_109214923300009495Pelagic MarineMLKRLYMSLHKKLGKSNSKTQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVMKIQNELNKLD*
Ga0115571_113266323300009495Pelagic MarineMSLQDKLGLKKKDPNRAYLELTKDELESLVVGLGEATFKGKQVESVFKLAVKLQNELKKLK*
Ga0115571_115212613300009495Pelagic MarineMLKRLYMSLHKRLGLKPNVESKTQNDKEVTLKLTQGELEALLIGLGEATFKGKQVESVYKLAVKLQIEIEKLK*
Ga0115570_1002348533300009496Pelagic MarineMSLHKRLGLSSKETQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVVKIQNELSKLN*
Ga0115570_1008258423300009496Pelagic MarineMSLHKRLGVKSNVESKTQTEKEVNLKLTKGELEALLIGLGEATFKGKQVESVNKLAVKLQIEIEKLK*
Ga0115568_1010918023300009498Pelagic MarineMIKRLFMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQIEIEKLK*
Ga0115572_1054905213300009507Pelagic MarineSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGRQVESVYKLVVKLQMEIEKLK*
Ga0115567_1023128533300009508Pelagic MarineMSLHKRLGLSSKETQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVMKIQNELNKLD*
Ga0098056_126273213300010150MarineMSLQDKLGLKKKDPNKAYLELTKDELESLIVGLGEATFKGKQVESVFKLAVKLQNELKKLK*
Ga0136549_1001361273300010389Marine Methane Seep SedimentYMSLHKKLGVTKDTPNNNEVTLKLTKGELEALLIGLGEASFRGKQVESVYKLAIKLQTELDKFKKQ*
Ga0182088_104268623300016703Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDE
Ga0182049_105545723300016736Salt MarshMGLHERLGLKSKKQEVNPNEANVTLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQE
Ga0182052_113247423300016742Salt MarshMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVK
Ga0182072_146717313300016754Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATF
Ga0181396_101600823300017729SeawaterMVSVFGFKQRNLLMLKWLYMSLHKKLGLSNKKTQNDEEANLKLTKGELEALLIGLGEASFKGKQVESVFKLAMKIQNEIKKLS
Ga0181392_106481123300017749SeawaterMSLHERLRLKPKKKEVNPNEANVSLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQDQLQKMK
Ga0181379_100465833300017783SeawaterMLKWLYMSLHKKLGLSNKKTQNDEEANLKLTKGELEALLIGLGEASFKGKQVESVFKLAMKIQNEIKKLS
Ga0181565_1048028323300017818Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKVKQVESVFKLAVKLQDEMRKLK
Ga0181552_1005920223300017824Salt MarshMSLHKRLGIPNSETQTEKEVTLKLTQGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIDKLK
Ga0181552_1040746223300017824Salt MarshMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKIK
Ga0181584_1026652923300017949Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDEMRKLK
Ga0181571_1036169523300017957Salt MarshGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDEMRKLK
Ga0181582_1008877913300017958Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVF
Ga0181585_1062696413300017969Salt MarshMSLQEKLGLKSKKEQLIPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDEMRKLK
Ga0181572_1007610623300018049Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDELRKLK
Ga0181561_1011830623300018410Salt MarshMNLHERLGLGTKKQESTTNEVTIKLTKGELETLIVGLGEATFKGKQVESVFKLALKLQEELKKMK
Ga0181560_1001001533300018413Salt MarshMLKRLYMSLHKRLGIPNSETQTEKEVTLKLTQGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIDKLK
Ga0181560_1001709743300018413Salt MarshMNLHERLGLGTKKQESTTNEVTIKLTKGELEALIVGLGEATFKGKQVESVFKLALKLQEELKKMK
Ga0181559_1016176413300018415Salt MarshRLGLGTKKQESTTNEVTIKLTKGELEALIVGLGEATFKGKQVESVFKLALKLQEELKKMK
Ga0181553_1020118833300018416Salt MarshMGLHERLGLKSKKQEVNPNEANVTLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQEELRKLS
Ga0181591_1104649823300018424Salt MarshMSLQDKLGLKKKDPNKAYLELTKDELESLIVGLGEATFKGKQVESVFKLAVKLQSELKKL
Ga0181568_1051474823300018428Salt MarshMGLASKFGLKKEETNPNEVSLTLTRGELEALIVGLGEATFKGKQVESVFKLALKLQEELKKLK
Ga0181564_1029121213300018876Salt MarshMGLADKLGLKKEQTKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKL
Ga0181564_1031399523300018876Salt MarshMSLHERLGLKSKKQEVNPNEANVTLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQEELRKLS
Ga0182073_142006123300019274Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKL
Ga0182067_155008323300019276Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVK
Ga0206125_1004788733300020165SeawaterMSLHKKLGKSNSKTQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVMKIQNELNKLD
Ga0208091_100324033300020506FreshwaterMGLAQKLGLKKEEPTNNPNEATLKLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQDELRKLQ
Ga0213863_1017746823300021371SeawaterDKLGLKKEQTKNPNEVTLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQEELKKLK
Ga0222718_1000715343300021958Estuarine WaterMGLADKLGLKKEETKNPNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAVKLQDALRKLN
Ga0222718_1001333223300021958Estuarine WaterMSLQQRLGLKKETKKDNEVTLKLTKGELEALLIGLGEASFKGRQVESVYNLAVKLQVELERLNK
Ga0222715_1013388723300021960Estuarine WaterMGIASKLGLQPKEVLNKSEGEVTLNLTKGEVEALLIGLGEATFKGKQVESVYKLAVKLQSELAKMK
Ga0255783_1028290913300022923Salt MarshKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDEMRKLK
Ga0255783_1035111423300022923Salt MarshMNLHERLGLGTKKQESTTNEVTIKLTKGELEALIVGLGEATFKGKQVESVFKLALKLQEELKKIK
Ga0255782_1012903123300023105Salt MarshMSLQEKLGLKPKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQDELRKLK
Ga0255782_1022871923300023105Salt MarshMSLQEKLGLKSKKEQLNPNEVMIKLTKGELEALIVGLGEATFKGKQVESVFKLAVKLQD
(restricted) Ga0233432_1002174523300023109SeawaterMSLHERLGLKSKKQEVNPNEVNVSLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQDQLQKMK
(restricted) Ga0233432_1024114233300023109SeawaterMSLHKRLGLSSKETQSEKEVTLKLTKGELEALLIGLGEATFKGKQVESVFKLAMKLQNEAKKLS
Ga0232123_106116213300023706Salt MarshMGLHERLGLKSKKQEVNPNEANVTLTKGELEALIIGLGEATFKGKQVESV
Ga0208667_100059553300025070MarineMLKRLYMSLHKKLGLSNNKTQNDKEGTLKLTKGELESLLIGLGEASFKGKQVESVFKLAMKIQNEIKKLS
Ga0208667_100171823300025070MarineMGLHEKLRLKPKKKQVNPNEANVSLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQDELQKMK
Ga0208298_100000153300025084MarineMSLHKKLGLSNNKTQNDKEGTLKLTKGELESLLIGLGEASFKGKQVESVFKLAMKIQNEIKKLS
Ga0209716_100567743300025626Pelagic MarineMIKRLFMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK
Ga0209716_100902613300025626Pelagic MarineMGLASKFGLKKEQPKNSNEATLKLTKGELEALIIGLGEASFKGKQVESVFKLAIKLQDELKKFN
Ga0209716_100952843300025626Pelagic MarineMSLQDKLGLKKKDPNRAYLELTKDELESLVVGLGEATFKGKQVESVFKLAVKLQNELKKL
Ga0209716_101764823300025626Pelagic MarineMSLQDKLGLKKKDPNKAYIELTKDELESLIVGLGEATFKGKQVESVFKLAVKLQSELKKL
Ga0209716_112674113300025626Pelagic MarineMSLHKRLGLKPNVESKTQNDKEVTLKLTQGELEALLIGLGEATFKGKQVESVYKLAVKLQIEIEKLK
Ga0209716_115102613300025626Pelagic MarineMSLHKRLGVKSNVESKTQTEKEVNLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQIEIEKLK
Ga0209194_108167813300025632Pelagic MarineMIKRLFMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGKQVESVYKLAV
Ga0209194_111225323300025632Pelagic MarineMSLHKRLGVKSNVESKTQTEKEVNLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK
Ga0209653_103247323300025695MarineMSLHKRLGLKPNVESKTQNDKEVTLKLTQGELEALLIGLGEASFKGKQVESVYKLAVKLQVEIEKLK
Ga0209653_106983423300025695MarineMSLHKRLGLSSKETQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVMKIQNELSKLN
Ga0209771_105751313300025701MarineMSLHERLRLKSKKKQVNPNEANVSLTKGELEALIIGLGEATFKGKQVESVFKLAVKLQEELRKLS
Ga0209602_101521043300025704Pelagic MarineMSLRNKATKSSKVEIKTQNEKEVTLKLTKGELEALLIGLGEATFKGKQVESVYKLAVKLQLEIEKLK
Ga0209602_118048023300025704Pelagic MarineMSLHKRLGLSSKETQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVMKIQNELNKLD
Ga0209603_102226033300025849Pelagic MarineMSLHKRLGLSSKETQNDNEVTLKLTKGELESLLIGLGEATFKGKQVESVFKLVVKIQNELSKLN
Ga0209953_100123633300026097Pond WaterMSLQDKLGLKKKDPNRAYLELTKDELESLIVGLGEATFKGKQVESVFKLAVKLQNELKKL
Ga0257126_116162223300028287MarineMSLHEKLRLKPKKKEVNPNETNVSLTKGELEALIMGLGEATFKGKQVESVFKLAVKLQDQLQKMK
Ga0307488_1012735423300031519Sackhole BrineMSLQSRLGLGKKENSNTEATLKLTKNELEALLVGLGEATFKGKQVESVFKLAIKLQDEIKRLS


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