Metagenome / Metatranscriptome Family F093952

Basic Information
Family ID	F093952
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	40 residues
Representative Sequence	SVREPLRRVNESILQVLSTVTISQMSEEPQEQVLVELRT
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.89 %
% of genes near scaffold ends (potentially truncated)	97.17 %
% of genes from short scaffolds (< 2000 bps)	87.74 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Most Common Taxonomy
Group	Bacteria (53.774 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (18.868 % of family members)
Environment Ontology (ENVO)	Unclassified (25.472 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.37% β-sheet: 0.00% Coil/Unstructured: 74.63%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00266	Aminotran_5	86.79
PF01592	NifU_N	5.66
PF00012	HSP70	2.83
PF01521	Fe-S_biosyn	0.94
PF07743	HSCB_C	0.94
PF01087	GalP_UDP_transf	0.94
PF02082	Rrf2	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	5.66
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	2.83
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.94
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.94
COG1076	DnaJ domain-containing protein	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.94
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.94
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.94
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.94
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.94
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.94
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.77 %
Unclassified	root	N/A	46.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.77 %
Unclassified	root	N/A	46.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.77 %
Unclassified	root	N/A	46.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	26.42 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	21.70 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	20.75 %
Candidatus Sumerlaeota	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	20.75 %
unclassified Candidatus Sumerlaeota	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	2.83 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.89 %
candidate division BRC1 bacterium ADurb.BinA364	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.23 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1.89 %
candidate division BRC1 bacterium ADurb.BinA364	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	1.89 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10069237	Not Available	2615	Open in IMG/M
3300002560\|JGI25383J37093_10182683	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	552	Open in IMG/M
3300004119\|Ga0058887_1480185	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	635	Open in IMG/M
3300004119\|Ga0058887_1485999	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	821	Open in IMG/M
3300005163\|Ga0066823_10006542	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1551	Open in IMG/M
3300005171\|Ga0066677_10088886	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1618	Open in IMG/M
3300005293\|Ga0065715_10345006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	961	Open in IMG/M
3300005446\|Ga0066686_10972395	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	553	Open in IMG/M
3300005454\|Ga0066687_10191661	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1110	Open in IMG/M
3300005554\|Ga0066661_10169959	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1341	Open in IMG/M
3300005650\|Ga0075038_10019352	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	594	Open in IMG/M
3300005764\|Ga0066903_109042457	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	504	Open in IMG/M
3300006102\|Ga0075015_100813637	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	562	Open in IMG/M
3300006354\|Ga0075021_10641362	Not Available	680	Open in IMG/M
3300006914\|Ga0075436_101555385	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	503	Open in IMG/M
3300007265\|Ga0099794_10016041	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3316	Open in IMG/M
3300009038\|Ga0099829_10672961	Not Available	860	Open in IMG/M
3300009038\|Ga0099829_11713742	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300009088\|Ga0099830_10204134	Not Available	1548	Open in IMG/M
3300009521\|Ga0116222_1214808	Not Available	829	Open in IMG/M
3300009553\|Ga0105249_12608446	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300010098\|Ga0127463_1087546	Not Available	1012	Open in IMG/M
3300010858\|Ga0126345_1003142	Not Available	1486	Open in IMG/M
3300010880\|Ga0126350_10336803	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300011120\|Ga0150983_10887690	Not Available	1413	Open in IMG/M
3300011120\|Ga0150983_13036160	Not Available	1076	Open in IMG/M
3300011120\|Ga0150983_14062113	Not Available	877	Open in IMG/M
3300011271\|Ga0137393_10412184	Not Available	1157	Open in IMG/M
3300011271\|Ga0137393_11139921	Not Available	662	Open in IMG/M
3300012004\|Ga0120134_1081514	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300012189\|Ga0137388_11519437	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300012209\|Ga0137379_10507750	Not Available	1113	Open in IMG/M
3300012357\|Ga0137384_10028337	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	4593	Open in IMG/M
3300012361\|Ga0137360_10716081	Not Available	860	Open in IMG/M
3300012373\|Ga0134042_1115227	All Organisms → cellular organisms → Bacteria → Acidobacteria	1635	Open in IMG/M
3300012406\|Ga0134053_1246182	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300012917\|Ga0137395_10181634	Not Available	1457	Open in IMG/M
3300012925\|Ga0137419_10853582	Not Available	747	Open in IMG/M
3300012927\|Ga0137416_10284372	Not Available	1365	Open in IMG/M
3300012929\|Ga0137404_11372685	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300012948\|Ga0126375_10589621	Not Available	847	Open in IMG/M
3300012971\|Ga0126369_12792858	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300012976\|Ga0134076_10128300	Not Available	1025	Open in IMG/M
3300013306\|Ga0163162_10191410	Not Available	2173	Open in IMG/M
3300013306\|Ga0163162_12091658	Not Available	649	Open in IMG/M
3300014154\|Ga0134075_10176595	Not Available	916	Open in IMG/M
3300015052\|Ga0137411_1354314	Not Available	6542	Open in IMG/M
3300015082\|Ga0167662_1003999	All Organisms → cellular organisms → Bacteria → Acidobacteria	1744	Open in IMG/M
3300015162\|Ga0167653_1036305	Not Available	908	Open in IMG/M
3300015374\|Ga0132255_105808579	Not Available	522	Open in IMG/M
3300017823\|Ga0187818_10025077	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2552	Open in IMG/M
3300017927\|Ga0187824_10187251	All Organisms → cellular organisms → Bacteria	699	Open in IMG/M
3300017930\|Ga0187825_10025337	All Organisms → cellular organisms → Bacteria → Acidobacteria	1997	Open in IMG/M
3300017975\|Ga0187782_11027258	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300017996\|Ga0187891_1287175	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300018007\|Ga0187805_10490284	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300018020\|Ga0187861_10259418	Not Available	755	Open in IMG/M
3300018077\|Ga0184633_10464856	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300018082\|Ga0184639_10074756	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1774	Open in IMG/M
3300020199\|Ga0179592_10105001	Not Available	1297	Open in IMG/M
3300020581\|Ga0210399_11261643	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300021168\|Ga0210406_10862688	Not Available	684	Open in IMG/M
3300021178\|Ga0210408_10960055	Not Available	663	Open in IMG/M
3300021178\|Ga0210408_11416130	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300021405\|Ga0210387_10459880	Not Available	1130	Open in IMG/M
3300021433\|Ga0210391_10073179	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2710	Open in IMG/M
3300021478\|Ga0210402_11753646	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300021478\|Ga0210402_11762438	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300021560\|Ga0126371_10990338	Not Available	983	Open in IMG/M
3300022513\|Ga0242667_1030691	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300022530\|Ga0242658_1083911	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300022531\|Ga0242660_1088287	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	741	Open in IMG/M
3300022720\|Ga0242672_1122102	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300024330\|Ga0137417_1376697	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4180	Open in IMG/M
3300025898\|Ga0207692_10820640	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300025898\|Ga0207692_10871203	Not Available	591	Open in IMG/M
3300025916\|Ga0207663_10739138	Not Available	781	Open in IMG/M
3300025938\|Ga0207704_11957518	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300026469\|Ga0257169_1029048	Not Available	818	Open in IMG/M
3300026490\|Ga0257153_1034182	Not Available	1049	Open in IMG/M
3300026550\|Ga0209474_10632157	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027654\|Ga0209799_1064171	Not Available	825	Open in IMG/M
3300027660\|Ga0209736_1012577	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2693	Open in IMG/M
3300027681\|Ga0208991_1137519	Not Available	725	Open in IMG/M
3300027684\|Ga0209626_1199162	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300027819\|Ga0209514_10156412	Not Available	1209	Open in IMG/M
3300027835\|Ga0209515_10249700	Not Available	1023	Open in IMG/M
3300027867\|Ga0209167_10012418	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	4032	Open in IMG/M
3300027875\|Ga0209283_10025397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	3663	Open in IMG/M
3300027875\|Ga0209283_10716302	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300027879\|Ga0209169_10406600	Not Available	716	Open in IMG/M
3300027882\|Ga0209590_10051983	Not Available	2288	Open in IMG/M
3300027894\|Ga0209068_10139470	Not Available	1305	Open in IMG/M
3300027895\|Ga0209624_10385247	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	934	Open in IMG/M
3300027905\|Ga0209415_10515391	Not Available	916	Open in IMG/M
3300027905\|Ga0209415_10691682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Sumerlaeota → unclassified Candidatus Sumerlaeota → candidate division BRC1 bacterium ADurb.BinA364	733	Open in IMG/M
3300028780\|Ga0302225_10350636	Not Available	696	Open in IMG/M
3300029993\|Ga0302304_10039868	All Organisms → cellular organisms → Bacteria → Acidobacteria	1905	Open in IMG/M
3300030923\|Ga0138296_1304115	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031128\|Ga0170823_16184839	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031545\|Ga0318541_10876591	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031754\|Ga0307475_10096773	Not Available	2298	Open in IMG/M
3300031823\|Ga0307478_10614596	Not Available	909	Open in IMG/M
3300031823\|Ga0307478_10899926	Not Available	741	Open in IMG/M
3300031897\|Ga0318520_10731480	Not Available	619	Open in IMG/M
3300031962\|Ga0307479_10511467	Not Available	1184	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.40%
Host-Associated	Host-Associated	6.60%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.13%
Aquatic	Environmental → Aquatic	12.26%
Plants	Host-Associated → Plants	6.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.25%
Freshwater	Environmental → Aquatic → Freshwater	7.55%
Sediment	Environmental → Aquatic → Sediment	4.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.72%
Peat	Environmental → Terrestrial → Peat	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.32%
Loam	Environmental → Terrestrial → Soil → Loam	16.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.91%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.72%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.89%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	1.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.89%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	18.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.43%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	4.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.77%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.77%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.89%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.89%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005650	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate RNA 2013_055 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010098	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012004	Permafrost microbial communities from Nunavut, Canada - A30_5cm_6M	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015082	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-11c, vegetated hydrological feature)	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017996	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_40	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018077	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022513	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022720	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026469	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027819	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)	Environmental	Open in IMG/M
3300027835	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029993	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_100692375	3300001593	Forest Soil	LRRVNESILHVLGTVTISQMSEDPQEPALVALQT*
JGI25383J37093_101826831	3300002560	Grasslands Soil	CSVREPLRRVNESILQVLSSVTISQMSEDPQEPTLVALQK*
Ga0058887_14801852	3300004119	Forest Soil	ATERCSVREPLRRVNESILNVLSTVTISQMSEEPYEPALVALRT*
Ga0058887_14859992	3300004119	Forest Soil	SVREPLRRVNESILTVLSTVTIAQMSEEAQEPALVALRA*
Ga0066823_100065423	3300005163	Soil	SVREPLRRVNESILNVLNMVTIAQMSEEPQQEHVLVALKA*
Ga0066677_100888861	3300005171	Soil	SVKEPLRRVNESILSVLGSVTIAQMSEDPHEPSLVALGT*
Ga0065715_103450062	3300005293	Miscanthus Rhizosphere	TDKCSVREPLRRVNESIMQVLSTVTISQMSEDPHEPVLIALSGAVR*
Ga0066686_109723952	3300005446	Soil	NCDAASKCSVREPLRRVNESILQVLNTVTISQMCDEPQEQVLVALRA*
Ga0066687_101916611	3300005454	Soil	HRCSVKEPLRRVNESILNVLGSVTIAQMSEDPHEPALVALTRT*
Ga0066661_101699592	3300005554	Soil	ATSKCSVREPLRRVNDSILNVLGTVTIAHMSEEPQERVLVALKA*
Ga0075038_100193521	3300005650	Permafrost Soil	ASDCCTVREPLRRVNESILSVLSNVTISQMSEDQHEHALVELQTT*
Ga0066903_1090424571	3300005764	Tropical Forest Soil	TCTVREPLRRVNESIARVLRSVTISQMSEDSPDAELVGLSV*
Ga0075015_1008136371	3300006102	Watersheds	TCTVREPLRRVNESIMQVLSTVTISQMSEEPDQPALVQMQS*
Ga0075021_106413621	3300006354	Watersheds	PLRRVNESILTVLGTVTIAQMSEEAQEPALVALRA*
Ga0075436_1015553852	3300006914	Populus Rhizosphere	KCSVREPLRRVNESILQVLGTVTISQMCDDPQEQVLVALRA*
Ga0099794_100160411	3300007265	Vadose Zone Soil	ECGQTSHCTIREPLRRVNESILQVLGAVTISQMSEEPQEGALVALRT*
Ga0099829_106729612	3300009038	Vadose Zone Soil	VREPLRRVNESILQVLGTVTISQMSEEPQERALVELRT*
Ga0099829_117137421	3300009038	Vadose Zone Soil	PLRRVNESILQVLNTVTISQMSEEPPEASLVGLRT*
Ga0099830_102041343	3300009088	Vadose Zone Soil	SVREPLRRVNESILTVLSAVTILQMSEEQHEPALVALRT*
Ga0116222_12148081	3300009521	Peatlands Soil	VREPLRRVNESIMQVLRNVTISQMSDDTAGELVELSN*
Ga0105249_126084461	3300009553	Switchgrass Rhizosphere	KCSVREPLRRVNESIMQVLSTVTISQMCDDPQEQVLVALRA*
Ga0127463_10875462	3300010098	Grasslands Soil	EPLRRVNESILNVLSTVTISQMSEELHEPALVALRT*
Ga0126345_10031423	3300010858	Boreal Forest Soil	SVREPLRRVNESILQVLSTVTISQMSEEPQEQVLVELRT*
Ga0126350_103368031	3300010880	Boreal Forest Soil	NCGAADKCSVREPLRRVNESILSVLSTVTISHMSEEQHEPVLVELQT*
Ga0150983_108876902	3300011120	Forest Soil	VKEPLRRVNESILTVLSTVTISQMSEEPQERTLVALRT*
Ga0150983_130361601	3300011120	Forest Soil	EPLRRVNESIIQVLSTVTISQMSEEPQEPVLVELRT*
Ga0150983_140621131	3300011120	Forest Soil	TEKCSVREPLRRVNESILNVLGTVTISQMSEEAHESALVELR*
Ga0137393_104121842	3300011271	Vadose Zone Soil	CGQTSHCTIREPLRRVNESILQVLGAVTISQMSEEPQEGVLVALRT*
Ga0137393_111399212	3300011271	Vadose Zone Soil	LRRVNDSILQVLSMVTISQMSEEPPQSSLVELQG*
Ga0120134_10815141	3300012004	Permafrost	TCTVREPLRRVNESIAQVLRSVTILQMAEDSPDAELVGLSI*
Ga0137388_115194371	3300012189	Vadose Zone Soil	EPLRRVNESILQVLSTVTISQMSEDPHEPALVELRT*
Ga0137379_105077501	3300012209	Vadose Zone Soil	TCTVREPLRKVNESIVQVLRAVSISQMTEDSPEAELVGLPS*
Ga0137384_100283371	3300012357	Vadose Zone Soil	NCDATERCSVKEPLRRVNESILNVLSTVTISQMSEELHEPALIALRT*
Ga0137360_107160811	3300012361	Vadose Zone Soil	DTTDRCSVREPLRRVNESILHVLGTVTISQMSEEPQERALVELRT*
Ga0134042_11152271	3300012373	Grasslands Soil	KEPLRRVNESILNVLGSVTIAQMSEDPHEPSLVALRT*
Ga0134053_12461822	3300012406	Grasslands Soil	SVREPLRRVNESILQLLSSVTILQMSEDPQEPTLVALQK*
Ga0137395_101816342	3300012917	Vadose Zone Soil	CDASSKCSVLEPLRRVNESVMNVLSTVTIAQMCDEPHEQQMLVALRA*
Ga0137419_108535822	3300012925	Vadose Zone Soil	CTVREPLRKVNESIVQVLRAVSILQMSEDSPEVELVGLPS*
Ga0137416_102843721	3300012927	Vadose Zone Soil	VREPLRRVNESILNVLSNVTISQMSEEPHERALVELRT*
Ga0137404_113726851	3300012929	Vadose Zone Soil	KCSVREPLRRVNESVMNVLSTVTIAQMCDEPHEQQTLVALRA*
Ga0126375_105896212	3300012948	Tropical Forest Soil	CDATEKCSVREPLRRVNESILHVLGTVTISQMSDDPQERTLVEIRG*
Ga0126369_127928582	3300012971	Tropical Forest Soil	CSVREPLRRVNESILHVLGTVTISQMSDDPQERTLVEIRG*
Ga0134076_101283001	3300012976	Grasslands Soil	TPRCSVREPLRRVNESILQVLSSVTISQMSEDPQEPTLVALQK*
Ga0163162_101914101	3300013306	Switchgrass Rhizosphere	LRRVNESIMQVLSTVTISQMSEDPHEPVLIALSGAVR*
Ga0163162_120916582	3300013306	Switchgrass Rhizosphere	EPLRRVNESIMQVLSTVTISQMCDDPQEQVLVALRA*
Ga0134075_101765952	3300014154	Grasslands Soil	TERCSVKEPLRRVNESILSVLGSVTIAQMSEDPHEPTLVALRT*
Ga0137411_135431417	3300015052	Vadose Zone Soil	MFGTEPLRRVNRQYFENVLGTVKIAQMSEEPQEQALVAFKA*
Ga0167662_10039993	3300015082	Glacier Forefield Soil	STKCSVREPLRRVNESVLQVLNAVTISQMCDEPQEQVLVALQA*
Ga0167653_10363051	3300015162	Glacier Forefield Soil	RRHTLIEIGRDTANRREPLRRVNESILSVLGNVTISQMSEDSHEPVLVELRA*
Ga0132255_1058085791	3300015374	Arabidopsis Rhizosphere	SKCSVREPLRRVNESIMQVLSTVTISQMCDDPQEQVLVALRA*
Ga0187818_100250771	3300017823	Freshwater Sediment	KEPLRRVNESILSVLSAVTISQMSEDPQEPALVALKA
Ga0187824_101872512	3300017927	Freshwater Sediment	PLRRVNESIAQVLRSVTISQMLEDSPDPELIGLSV
Ga0187825_100253373	3300017930	Freshwater Sediment	AASKCSVREPLRRVNDSIMQVLSTVTIAQMCDEPQEVLVALRA
Ga0187782_110272582	3300017975	Tropical Peatland	VREPLRKVNESIVQVLRAVSISQMSEESHEPELVGLR
Ga0187891_12871752	3300017996	Peatland	DPLRRVNESILQVLGAVTISQMTEDSPEAELVGLPG
Ga0187805_104902841	3300018007	Freshwater Sediment	QSPTCTVREPLRRVNESIMQVLSTVTISQMSEDPDQPALVQMQS
Ga0187861_102594182	3300018020	Peatland	REPLRRVNESILQVLRNVTISEMGDESGAAELVELSS
Ga0184633_104648561	3300018077	Groundwater Sediment	PLRRVNESILQVLSTVTISQMSEDPQGPALVELRS
Ga0184639_100747561	3300018082	Groundwater Sediment	TCTVREPLRRVNDSILQILKTVTISQLSEDSSEPVLVDLPS
Ga0179592_101050012	3300020199	Vadose Zone Soil	SSKCSVREPLRRVNESVMNVLSTVTIAQMCDEPHEQQMLVALRA
Ga0210399_112616432	3300020581	Soil	QSNTCTVREPLRKVNESIVQVLRAVSISQMTEDSPEAELVGLSS
Ga0210406_108626881	3300021168	Soil	RVNESILQVLGTVTISQMSEELQEPALVELRTLGD
Ga0210408_109600552	3300021178	Soil	CDATEKCSVREPLRRVNESILTVLSTVTIAQMSEEAQEPALVALRA
Ga0210408_114161301	3300021178	Soil	DRCSVREPLRRVNESILHVLGTVTISQMSEEPQETLVALRT
Ga0210387_104598801	3300021405	Soil	DATDKCSVREPLRRVNESILQVLSTVTISQMSEDPHEPALVALSLTR
Ga0210391_100731795	3300021433	Soil	FVDATEKCSVREPLRRVNESILEVLGSVTISQLSEEPHEQALVALRT
Ga0210402_117536462	3300021478	Soil	REPLRKVNESILQVLRAVSISQMSEESPEAELVGLST
Ga0210402_117624381	3300021478	Soil	EKCSVREPLRRVNESILTVLGTVTIAQMSEEAQEPALVALRA
Ga0126371_109903382	3300021560	Tropical Forest Soil	CDAASKCSVREPLRRVNESILQVLSTVTISQMCDDPQEQVLVALRA
Ga0242667_10306912	3300022513	Soil	VREPLRRVNESIAQVLRSVTISQMAEDSPDAELVGLSI
Ga0242658_10839112	3300022530	Soil	RKVNDSIMQVLSTVTISQMSEEHHEPALVALSSSPR
Ga0242660_10882871	3300022531	Soil	TCTVREPLRKVNESIVQVLRAVSILQMTEDSPEAELVGLPS
Ga0242672_11221021	3300022720	Soil	ATDKCSVREPLRRVNESILQVLSTVTISQMSEDPHEPALVALSLTR
Ga0137417_13766979	3300024330	Vadose Zone Soil	EPLRRVNESILNVLSTVTISQMSEEPYEPALVALRT
Ga0207692_108206401	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	SVREPLRRVNESILNVLNTVTIAQMSEEPHEQALVALKA
Ga0207692_108712032	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PLRRVNESILQVLSTVTISQMSEEPLEPALVELRA
Ga0207663_107391382	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GAADKCSVREPLRRVNESILSVLSTVTISHMSEEQHEPVLVELQT
Ga0207704_119575181	3300025938	Miscanthus Rhizosphere	AASKCSVREPLRRVNESIMQVLSTVTISQMCDDPQEQVLVALRA
Ga0257169_10290481	3300026469	Soil	SVREPLRRVNESVMNVLSTVTIAQMCDEPHEQQMLVALRA
Ga0257153_10341822	3300026490	Soil	REPLRRVNESVMNVLSTVTIAQMCDEPHEQQMLVALRA
Ga0209474_106321572	3300026550	Soil	KCSVREPLRRVNESILNVLSTVTISQMSEELHEPSLVALRT
Ga0209799_10641712	3300027654	Tropical Forest Soil	REPLRRVNESIMQVLSTVTIAQMCDDPQEQILVALRA
Ga0209736_10125771	3300027660	Forest Soil	PLRRVNESILHVLGTVTISQMSEDPQEPALVALQT
Ga0208991_11375192	3300027681	Forest Soil	DRCSVREPLRRVNESIIQVLSTVTISQMSEEPQEPALVELRA
Ga0209626_11991621	3300027684	Forest Soil	RCSVREPLRRVNESILQVLSTVTISQMSEESQEQVLVELRT
Ga0209514_101564122	3300027819	Groundwater	EPLRKVNDSILQVLSTVTISQMAEEPRSSSVVELRV
Ga0209515_102497002	3300027835	Groundwater	EPLRRVNESILQVLSTVTISQMSEEPQEPALVDLRT
Ga0209167_100124181	3300027867	Surface Soil	EPLRRVNESVMQVLSTVTISQMCDEPQEQALVALRA
Ga0209283_100253978	3300027875	Vadose Zone Soil	REPLRRVNESILSVLSAVTISQMSEEPHEPALVALRT
Ga0209283_107163021	3300027875	Vadose Zone Soil	CSVREPLRRVNESILQVLSAVTISQMSEEPHEPELVELRT
Ga0209169_104066002	3300027879	Soil	LRKVNESILQVLGTVTISQMSEEHHEPALVALSSALR
Ga0209590_100519831	3300027882	Vadose Zone Soil	ATERCSVKEPLRRVNESILSVLGTVTISQMSEDPHEPALVALRT
Ga0209068_101394701	3300027894	Watersheds	REPLRRVNESIAQVLRAVTISQMTEDSPDAELVGLTI
Ga0209624_103852471	3300027895	Forest Soil	TVREPLRRVNESIAQVLRSVTISQMAEDSPDAELVGLSI
Ga0209415_105153912	3300027905	Peatlands Soil	VREPLRKVNESILQVLRAVSISQMSEESPDAELVGLST
Ga0209415_106916822	3300027905	Peatlands Soil	EPLRRVNDSILQILKAVTISQMTEGSAERELVDLPS
Ga0302225_103506362	3300028780	Palsa	EPLRRVNESILQVLRNVTISEMGDESGAPALVELSS
Ga0302304_100398681	3300029993	Palsa	REPLRKVNESILNVLGTVTISQMSEETQEQVLVELR
Ga0138296_13041151	3300030923	Soil	ASSKCSVREPLRRVNESVMNVLNTVTIAQMCDEPQEQQMLVPLRA
Ga0170823_161848392	3300031128	Forest Soil	DATDRCSVREPLRRVNESILQVLSTVTISQMSEEPQEAALVELRT
Ga0318541_108765912	3300031545	Soil	SKCSVREPLRRVNESILQVLSSVTISQMCDDPQEQVLVALRA
Ga0307475_100967731	3300031754	Hardwood Forest Soil	PLRRVNESILQVLHTVTISQMCEEPQQEMLVALRA
Ga0307478_106145961	3300031823	Hardwood Forest Soil	RCSVREPLRRVNESILHVLGTVTISQMSEEPQEPALVELRT
Ga0307478_108999262	3300031823	Hardwood Forest Soil	REPLRRVNESILQILKAVTISQMSDDSREHVLVELPS
Ga0318520_107314801	3300031897	Soil	QRCSVKEPLRRVNESILSVLGSVTIAQMSEDPQEPSLVALRT
Ga0307479_105114671	3300031962	Hardwood Forest Soil	SVREPLRRVNESILNVLSTVTISQMSEEPHEPSLVALRT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093952

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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