Metagenome Family F094165

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094165
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	95 residues
Representative Sequence	MHNRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNDHGVELLRRYPQDFLDGTGMTVEQYLHALTVHIDCCHIFLKKI
Number of Associated Samples	84
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.13 %
% of genes near scaffold ends (potentially truncated)	17.92 %
% of genes from short scaffolds (< 2000 bps)	71.70 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (51.887 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (19.811 % of family members)
Environment Ontology (ENVO)	Unclassified (26.415 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.151 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.08% β-sheet: 1.69% Coil/Unstructured: 43.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00079	Serpin	5.66
PF06537	DHOR	3.77
PF00072	Response_reg	1.89
PF00440	TetR_N	1.89
PF13602	ADH_zinc_N_2	1.89
PF00135	COesterase	1.89
PF07715	Plug	1.89
PF03692	CxxCxxCC	1.89
PF01850	PIN	1.89
PF05228	CHASE4	1.89
PF02518	HATPase_c	1.89
PF00719	Pyrophosphatase	0.94
PF00190	Cupin_1	0.94
PF01436	NHL	0.94
PF07859	Abhydrolase_3	0.94
PF07992	Pyr_redox_2	0.94
PF13701	DDE_Tnp_1_4	0.94
PF01494	FAD_binding_3	0.94
PF14552	Tautomerase_2	0.94
PF04389	Peptidase_M28	0.94
PF02630	SCO1-SenC	0.94
PF06577	EipA	0.94
PF12849	PBP_like_2	0.94
PF00593	TonB_dep_Rec	0.94
PF05048	NosD	0.94
PF13424	TPR_12	0.94
PF13511	DUF4124	0.94
PF01344	Kelch_1	0.94
PF13290	CHB_HEX_C_1	0.94
PF12276	DUF3617	0.94
PF00881	Nitroreductase	0.94
PF08530	PepX_C	0.94
PF13193	AMP-binding_C	0.94
PF01425	Amidase	0.94
PF03466	LysR_substrate	0.94
PF01906	YbjQ_1	0.94
PF03734	YkuD	0.94
PF00561	Abhydrolase_1	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG4826	Serine protease inhibitor	Posttranslational modification, protein turnover, chaperones [O]	5.66
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	3.77
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.89
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	1.89
COG3322	Extracellular (periplasmic) sensor domain CHASE (specificity unknown)	Signal transduction mechanisms [T]	1.89
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0221	Inorganic pyrophosphatase	Energy production and conversion [C]	0.94
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.94
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.94
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.94
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.94
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.94
COG1225	Peroxiredoxin	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.94
COG1999	Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2936	Predicted acyl esterase	General function prediction only [R]	0.94
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.89 %
Unclassified	root	N/A	48.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.89 %
Unclassified	root	N/A	48.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.89 %
Unclassified	root	N/A	48.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.83 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.94 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.94 %
Alphaproteobacteria bacterium 13_1_20CM_3_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_3_64_12	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.94 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	0.94 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.94 %
Alphaproteobacteria bacterium 13_1_20CM_3_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_3_64_12	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
unclassified Methylocystis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis	0.94 %
Paraburkholderia solitsugae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	0.94 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.94 %
Alphaproteobacteria bacterium 13_1_20CM_3_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_3_64_12	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.11 %
Methylocystis sp. SB2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SB2	0.94 %
Paraburkholderia solitsugae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	0.94 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	0.94 %
Alphaproteobacteria bacterium 13_1_20CM_3_64_12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_3_64_12	0.94 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001170\|JGI12704J13340_1010089	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300001546\|JGI12659J15293_10054337	Not Available	908	Open in IMG/M
3300001593\|JGI12635J15846_10036815	All Organisms → cellular organisms → Bacteria	3851	Open in IMG/M
3300001593\|JGI12635J15846_10759444	Not Available	557	Open in IMG/M
3300002245\|JGIcombinedJ26739_100156683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2152	Open in IMG/M
3300002245\|JGIcombinedJ26739_100160670	All Organisms → cellular organisms → Bacteria	2124	Open in IMG/M
3300002245\|JGIcombinedJ26739_100305026	All Organisms → cellular organisms → Bacteria	1476	Open in IMG/M
3300002245\|JGIcombinedJ26739_101318731	Not Available	613	Open in IMG/M
3300004082\|Ga0062384_100027584	All Organisms → cellular organisms → Bacteria	2514	Open in IMG/M
3300004082\|Ga0062384_100131793	Not Available	1390	Open in IMG/M
3300004082\|Ga0062384_100680807	Not Available	706	Open in IMG/M
3300004092\|Ga0062389_101223344	Not Available	937	Open in IMG/M
3300005538\|Ga0070731_10324194	Not Available	1023	Open in IMG/M
3300005591\|Ga0070761_10000086	All Organisms → cellular organisms → Bacteria → Proteobacteria	61969	Open in IMG/M
3300005602\|Ga0070762_11215290	Not Available	522	Open in IMG/M
3300006176\|Ga0070765_100657827	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300009500\|Ga0116229_10332194	Not Available	1278	Open in IMG/M
3300009521\|Ga0116222_1427536	Not Available	577	Open in IMG/M
3300009522\|Ga0116218_1017976	All Organisms → cellular organisms → Bacteria	3131	Open in IMG/M
3300009633\|Ga0116129_1002978	All Organisms → cellular organisms → Bacteria	8318	Open in IMG/M
3300009665\|Ga0116135_1118869	Not Available	968	Open in IMG/M
3300009683\|Ga0116224_10294193	Not Available	773	Open in IMG/M
3300009709\|Ga0116227_10051862	Not Available	3739	Open in IMG/M
3300009824\|Ga0116219_10459999	Not Available	706	Open in IMG/M
3300010341\|Ga0074045_10015539	All Organisms → cellular organisms → Bacteria → Proteobacteria	6135	Open in IMG/M
3300010341\|Ga0074045_10823789	Not Available	586	Open in IMG/M
3300010379\|Ga0136449_100036476	All Organisms → cellular organisms → Bacteria → Proteobacteria	11626	Open in IMG/M
3300012683\|Ga0137398_10718852	Not Available	695	Open in IMG/M
3300012924\|Ga0137413_10068660	All Organisms → cellular organisms → Bacteria	2116	Open in IMG/M
3300012925\|Ga0137419_11092833	Not Available	664	Open in IMG/M
3300013314\|Ga0175859_1083948	Not Available	1315	Open in IMG/M
3300014167\|Ga0181528_10249471	Not Available	958	Open in IMG/M
3300014201\|Ga0181537_10803210	Not Available	638	Open in IMG/M
3300014654\|Ga0181525_10673947	All Organisms → cellular organisms → Bacteria → Proteobacteria	579	Open in IMG/M
3300014655\|Ga0181516_10527284	Not Available	607	Open in IMG/M
3300015206\|Ga0167644_1123500	Not Available	715	Open in IMG/M
3300015242\|Ga0137412_10001690	All Organisms → cellular organisms → Bacteria → Proteobacteria	17248	Open in IMG/M
3300017823\|Ga0187818_10100219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → unclassified Methylocystis → Methylocystis sp. SB2	1253	Open in IMG/M
3300017955\|Ga0187817_10765173	Not Available	616	Open in IMG/M
3300017995\|Ga0187816_10069584	Not Available	1490	Open in IMG/M
3300018009\|Ga0187884_10222826	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300018019\|Ga0187874_10384975	Not Available	566	Open in IMG/M
3300018062\|Ga0187784_10007847	All Organisms → cellular organisms → Bacteria	8624	Open in IMG/M
3300018085\|Ga0187772_10412235	Not Available	942	Open in IMG/M
3300020021\|Ga0193726_1000050	All Organisms → cellular organisms → Bacteria → Proteobacteria	231023	Open in IMG/M
3300020021\|Ga0193726_1000563	All Organisms → cellular organisms → Bacteria → Proteobacteria	37904	Open in IMG/M
3300020021\|Ga0193726_1233123	Not Available	756	Open in IMG/M
3300020034\|Ga0193753_10000175	All Organisms → cellular organisms → Bacteria → Proteobacteria	61449	Open in IMG/M
3300020060\|Ga0193717_1012299	All Organisms → cellular organisms → Bacteria	4015	Open in IMG/M
3300020060\|Ga0193717_1021730	All Organisms → cellular organisms → Bacteria → Proteobacteria	2707	Open in IMG/M
3300020061\|Ga0193716_1122792	Not Available	1082	Open in IMG/M
3300020579\|Ga0210407_10738776	Not Available	762	Open in IMG/M
3300020580\|Ga0210403_10234907	All Organisms → cellular organisms → Bacteria	1505	Open in IMG/M
3300020580\|Ga0210403_10390892	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300020582\|Ga0210395_10818590	Not Available	694	Open in IMG/M
3300020583\|Ga0210401_10598050	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300020583\|Ga0210401_11168007	Not Available	628	Open in IMG/M
3300021180\|Ga0210396_10266883	All Organisms → cellular organisms → Bacteria → Proteobacteria	1520	Open in IMG/M
3300021181\|Ga0210388_10573666	All Organisms → cellular organisms → Bacteria → Proteobacteria	988	Open in IMG/M
3300021181\|Ga0210388_11710711	Not Available	520	Open in IMG/M
3300021402\|Ga0210385_11347540	Not Available	546	Open in IMG/M
3300021404\|Ga0210389_10023540	All Organisms → cellular organisms → Bacteria	4759	Open in IMG/M
3300021406\|Ga0210386_10434684	Not Available	1133	Open in IMG/M
3300021420\|Ga0210394_10045831	All Organisms → cellular organisms → Bacteria → Proteobacteria	3837	Open in IMG/M
3300021420\|Ga0210394_10445984	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300021420\|Ga0210394_11167837	Not Available	662	Open in IMG/M
3300021432\|Ga0210384_11193724	Not Available	665	Open in IMG/M
3300021433\|Ga0210391_10076627	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300021474\|Ga0210390_10115466	All Organisms → cellular organisms → Bacteria	2246	Open in IMG/M
3300021475\|Ga0210392_10097734	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300021477\|Ga0210398_11606218	Not Available	504	Open in IMG/M
3300025463\|Ga0208193_1001004	All Organisms → cellular organisms → Bacteria	12980	Open in IMG/M
3300027496\|Ga0208987_1019733	Not Available	1151	Open in IMG/M
3300027559\|Ga0209222_1009886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_1_20CM_3_64_12	1951	Open in IMG/M
3300027568\|Ga0208042_1178818	Not Available	527	Open in IMG/M
3300027604\|Ga0208324_1046711	Not Available	1269	Open in IMG/M
3300027609\|Ga0209221_1006665	All Organisms → cellular organisms → Bacteria	2948	Open in IMG/M
3300027609\|Ga0209221_1109648	All Organisms → cellular organisms → Bacteria → Proteobacteria	706	Open in IMG/M
3300027609\|Ga0209221_1182412	Not Available	510	Open in IMG/M
3300027676\|Ga0209333_1090567	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300027737\|Ga0209038_10137814	Not Available	739	Open in IMG/M
3300027853\|Ga0209274_10000053	All Organisms → cellular organisms → Bacteria → Proteobacteria	115056	Open in IMG/M
3300027854\|Ga0209517_10137750	Not Available	1580	Open in IMG/M
3300027895\|Ga0209624_10016688	All Organisms → cellular organisms → Bacteria	4669	Open in IMG/M
3300027895\|Ga0209624_10317266	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300027908\|Ga0209006_10050034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3755	Open in IMG/M
3300027908\|Ga0209006_10207235	All Organisms → cellular organisms → Bacteria	1700	Open in IMG/M
3300027908\|Ga0209006_10256558	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300028773\|Ga0302234_10152559	Not Available	1006	Open in IMG/M
3300028780\|Ga0302225_10203567	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300029910\|Ga0311369_10429743	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300029911\|Ga0311361_10154875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2988	Open in IMG/M
3300029914\|Ga0311359_10342367	Not Available	1211	Open in IMG/M
3300029953\|Ga0311343_10468878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1131	Open in IMG/M
3300030043\|Ga0302306_10436682	Not Available	500	Open in IMG/M
3300030519\|Ga0302193_10442904	Not Available	651	Open in IMG/M
3300030580\|Ga0311355_11572326	Not Available	565	Open in IMG/M
3300030738\|Ga0265462_10621778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	828	Open in IMG/M
3300031261\|Ga0302140_10408860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1091	Open in IMG/M
3300031708\|Ga0310686_103714263	Not Available	700	Open in IMG/M
3300031708\|Ga0310686_114309150	Not Available	858	Open in IMG/M
3300031715\|Ga0307476_10751169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	722	Open in IMG/M
3300031837\|Ga0302315_10211151	Not Available	1161	Open in IMG/M
3300032174\|Ga0307470_10000418	All Organisms → cellular organisms → Bacteria → Proteobacteria	21909	Open in IMG/M
3300032174\|Ga0307470_10557011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	848	Open in IMG/M
3300033134\|Ga0335073_10000773	All Organisms → cellular organisms → Bacteria → Proteobacteria	41880	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.17%
Host-Associated	Host-Associated	2.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.13%
Aquatic	Environmental → Aquatic	16.04%
Plants	Host-Associated → Plants	2.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.75%
Freshwater	Environmental → Aquatic → Freshwater	16.04%
Peat	Environmental → Terrestrial → Peat	10.38%
Peat Moss	Host-Associated → Plants → Peat Moss	1.89%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.34%
Loam	Environmental → Terrestrial → Soil → Loam	21.70%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.38%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.72%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	21.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.38%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.83%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.83%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	17.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.49%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.55%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.66%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.72%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	4.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.77%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.89%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.89%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	1.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Moss Associated	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Moss Associated	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001170	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009500	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fc - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013314	Moss microbial communities from three moss species from boreal forest in Fairbanks, Alaska, USA Reanalysis	Host-Associated	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014655	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaG	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020021	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020060	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025463	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)	Environmental	Open in IMG/M
3300027496	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029953	II_Bog_E3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030519	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E3_3	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12704J13340_10100892	3300001170	Forest Soil	MHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIVRGTKWLNYHGFELLRRYPQDFLDGAGMTVEEYLQALTVHIDCCHILLKKIEDSRPSHDAQQ*
JGI12659J15293_100543372	3300001546	Forest Soil	VHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLRRYPQDFLDGAGMTVEQYLQALTVHIDCCHILLKKFEDLTRTHDALQ*
JGI12635J15846_100368152	3300001593	Forest Soil	MRKGKISRDDDRQPIIAGFTQEDFERLNRLTHARNLRSVIKCTKWLNDHGIELLRRYPQEFHYGTGMTVEQYLQALTVHVDCCRAFLKKAERLETNMYHIAQ*
JGI12635J15846_107594441	3300001593	Forest Soil	RDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNHHGVELLRLHPQDFLDGAGMTVEQYLQALTVHIDCCHIFLKKIEDLRRSHDAR*
JGIcombinedJ26739_1001566831	3300002245	Forest Soil	MINKRIFSDDDRRPIVAGFTREDFERFNRLTHAKHLRSIVQCTKWLNEHGVELLRRYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLERM*
JGIcombinedJ26739_1001606703	3300002245	Forest Soil	VHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGAELLRRYPQDFLDGAGMTVEQYLQALTVHIDCCHILLKKFEDLARSHDVLQ*
JGIcombinedJ26739_1003050263	3300002245	Forest Soil	MHKKIVSRDDGCRAIIGGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELLRLYPRDFLDGAGMTVEQYLQALTVHIDCCHNLLKRIED*
JGIcombinedJ26739_1013187311	3300002245	Forest Soil	MMHKRKVSRDDGSRAIIAGFTREDFERLNRLDHANNLRCIIRGTKWLNDHGVELLREYPQDFLDGAGMTVEQYLQALTVHIDCCHILLERIEDSRRPHRARQ*
Ga0062384_1000275842	3300004082	Bog Forest Soil	MRKRKLLSDDDGPAIIADFTREDFARLNRLAHAKNLRSVIKCTKWLNEHGVELLREYPDEFCYGTGMTVEQYLQALTVHVDCCLAFLKRI*
Ga0062384_1001317932	3300004082	Bog Forest Soil	MRKSKILSDDDRRPTIAGFTRDDFERFNRLTHAKNLRSIIKSTKWLNDHGVELLRRYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLERM*
Ga0062384_1006808071	3300004082	Bog Forest Soil	MLLKPPGETTMSKSKILSDDDRRPIIAGFIREDFERFNRLTHARNLRSIIKCTKWLNDHGVELLRRYPQEFRYGTGMTVEQYLHALTVHVDCCRAFLKRM*
Ga0062389_1012233442	3300004092	Bog Forest Soil	MRKGKILSDDDRRSTIAGFTPDDFERFNRLTHAKNLRSIIKCTKWLNDHGVELLRRYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLERM*
Ga0070731_103241942	3300005538	Surface Soil	MRKRDIFLDDDQRPIIAGVTRGDFARLNKLAHARNLRSIIKCTKWLNDHGVELLRRYPHEFRSGTGMTVEQYLRALTVHVDCCRAFLRKCEDSAPKRSALSWY*
Ga0070761_100000865	3300005591	Soil	MRKASISSNDDRRPIIAGFTQEDFERLNRLAHARNLRSIIKCTKWLNEHGVELLQRYPQEFRDGTGMTVEQYLHALTVHVDCCRAFLKRM*
Ga0070762_112152902	3300005602	Soil	MHKKIVSRDDGRRAVIAGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELLRLYPRDFVDGAGMTVEQYLQALTVHIDCCHNLLKRIEDISRSHDARQ*
Ga0070765_1006578272	3300006176	Soil	MRERKLLSDDRRPIIAGFTREDFERLNRLTHAKHLRSIIKCTKWLNGHGVELLRRYPQEFRSGTGMTVEEYLHALTVHVDRCRAFLERM*
Ga0116229_103321941	3300009500	Host-Associated	MLSDDGWRPIIADFTREDFERFNRLTHAKNLRSIIKATKWLNDHGVELMRQYPQEFRSGAGMTVEEYLSALTSHVD
Ga0116222_14275361	3300009521	Peatlands Soil	MSKRRVLSDDDGRAIIAGFTRKDIERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT*
Ga0116218_10179763	3300009522	Peatlands Soil	MSKRRVLSDDDGRAIIAGFTRKDFERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT*
Ga0116129_10029783	3300009633	Peatland	MHKRKVSRDDGGRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLRRYPQDFLDGAGMTVEEYLQALTVHIDCCQILLKKIEDSRPSHDAAARVD*
Ga0116135_11188692	3300009665	Peatland	MRKGKISRDDDRQPIIAGFTQDDFERLNRLTHARNLRSVIKCTKWLNDHGIELLRRYPQEFHYGTGMTVEQYLQALTVHVDCCRAFLKKAERLETNMYHIAQ*
Ga0116224_102941931	3300009683	Peatlands Soil	DDDGRAIIAGFTRKDIERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT*
Ga0116227_100518624	3300009709	Host-Associated	MLSDDGWRPIIADFTREDFERFNRLTHAKNLRSIIKATKWLNDHGVELMRQYPQEFRSGAGMTVEEYLSALTSHVDRCRAFLEKI*
Ga0116219_104599991	3300009824	Peatlands Soil	DRRAIIAGFTRKDFERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT*
Ga0074045_100155393	3300010341	Bog Forest Soil	MSKRRVLSDDDRRAIIAGFTRKDFERLNRLAHAKNLHSIIKCTKWLNDHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT*
Ga0074045_108237891	3300010341	Bog Forest Soil	VLCLLRVEALPLARLPGEMTMSKDKVLSDDDRRPIIAGFTREDIERLNRLAHATNLRSIIKCTKWLNDHGVELLRRHPQEFCDCTGMTVEQYLHALTVHADCCRTFLKKMGGLEV*
Ga0136449_1000364768	3300010379	Peatlands Soil	MSKRRVLSDDDGRAIIAGFTRKDFERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKRSGGLEVT*
Ga0137398_107188522	3300012683	Vadose Zone Soil	MHKRRALRDDDHRAIIAGFSRADFERLNRLDHARNLRCIIKSTKWLNDHGLELLRRYPQDFHDGAGMTVEEYLQALTVHIDRCHALLKKVEEQRKALT*
Ga0137413_100686602	3300012924	Vadose Zone Soil	MHKRRALRDDDHRAIIAGFTRADFERLNRLDHARNLRCIIKSTKWLNDHGLELLRRYPQDFHDGAGMTVEEYLQALTVHIDRCHALLKKVEEQRKALT*
Ga0137419_110928332	3300012925	Vadose Zone Soil	MHKRQVSRDDDRRAIIAGFTREDFQRLNRLDHAKNLRCIIKSTKWLNDHGLELLRRYPQDFHDGAGMTVEEYLQALTVHIDRCHALLKKVEEQRKALT*
Ga0175859_10839482	3300013314	Moss Associated	MIADFTQEDFERFNRLTHAKNLRSIIKATKWLNDHGVELIRQYPQEFRTGTGMTVEEYLSALTAHVDRCRAFLERM*
Ga0181528_102494712	3300014167	Bog	MKENQILSDADRRPIIADFSREDFERFNRMTHAKNLRSIIQCTKWLNDHGVELLRRYPQEFCRGTGMTVEEYRQALTVHVDRCRAFLERM*
Ga0181537_108032101	3300014201	Bog	MSKRKMLSDDGWRPIIADFTREDFERFNRLTHAKNLRSIIKATKWLNDHGVELMRQYPQEFRSGAGMTVEEYLTALTSHVDRCRAFLERM*
Ga0181525_106739472	3300014654	Bog	MSKSKTLSDDGWRPIIADFTREDFERFNRLTHAKNLRSIIKATKWLNDHGVELMRQYPQEFRSGAGMTVEEYLTALTSHVDRCRAFLERM*
Ga0181516_105272841	3300014655	Bog	MSKSKTLSDDGWRPIIADFTREDFERFNRLTHAKNLRSIIKATKWLNDHGVELMRQYPQEFRSGAGMTVEEYLSALTSHVDRCRAFLERV*
Ga0167644_11235001	3300015206	Glacier Forefield Soil	MINRGIFSDDDHRPIVAGFTREDFERFNRLTHAKNLRSIIKCTKWLNEHGVELLRRYPQEFRSGTGMTVEEYLQALSVHVDRCRAFLDKM*
Ga0137412_100016909	3300015242	Vadose Zone Soil	MHKRRALRDDDRRAIIAGFTRADFERLNRLDHARNLRCIIKSTKWLNDHGLELLRRYPQDFHDGAGMTVEEYLQALTVHIDRCHALLKKVEEQRKALT*
Ga0187818_101002192	3300017823	Freshwater Sediment	MRKRRILSDDDRRPIIAGFTREDFERLNRLAHAKNLRSIIKCTKWLNDHGVELLRRYPQEFSDGTGMTVEQYLHALTVHVDCCRAFLKKMGGLEALT
Ga0187817_107651732	3300017955	Freshwater Sediment	MSKRKVLSDDDRRAIIAGFTREDFERLNRLAHAKNLRSIIKCTKWLNDHGVELLRRYPQEFSDGTGMTVEQYLHALTVHVDCCRAFLKKMGGLEALT
Ga0187816_100695841	3300017995	Freshwater Sediment	MPRRRIQCAMSKRKVLSDDDRRAIIAGFTREDFERLNRLAHAKNLRSIIKCTKWLNDHGVELLRRYPQEFRDGTGMTVEQYLHALTVHVDRCRIFLKKMGGLEDT
Ga0187884_102228262	3300018009	Peatland	MSKQEILSDEDRRPIIADFTREDFERFNRLTHAKNLRSVIKCTKWLNDYGVELLRRYPQEFHCGTGMTVEEYLHALTVHVDRCRAFLGRM
Ga0187874_103849752	3300018019	Peatland	MSKQEILSDEDRRPIIADFTREDFERFNRLTHAKNLRSVIKCTKWLNDYGVELLRRYPQEFHCGTGMTVEEY
Ga0187784_100078479	3300018062	Tropical Peatland	MRKGRIGSHDGRRAIIASFTREDFERHNRLVHAKNLCSIVKYTKWLNCHGVELLQRYPQEFHRCTGMTVEQYLQALGSHVDRCRVFQETLTTHRSYA
Ga0187772_104122352	3300018085	Tropical Peatland	MRRRKIPSEEDRRPIIGGFVREDFERLNRLTHAKNLRSIIRTTKWLNDQGIELLQRHPGEFHYGTGMTVEQYLHALTVHVDCCRAFLKRV
Ga0193726_1000050187	3300020021	Soil	MVCSAGLRRLPRRSQHTSICNRSCLNPHGETTMINRRISSDDDHRPIVAGFTREDFERFNRLTHAKNLRSIIKCTKWLNEHGVELLRRYPQEFRCGTGMTVEEYLQALSVHIDRCRAFLDKM
Ga0193726_100056312	3300020021	Soil	MTFRERKLLSDDDRRPIIAGFTREDFERLNRLTHAKNLRSIIKSTKWLNEHGVELLRRHPREFRYGTGMTVEEYLQALAVHVDQCRAFLERV
Ga0193726_12331231	3300020021	Soil	RLPMVSLREGVMTLRDAMSDDDRRPIVAGFTREDLERFNRLTHAKNLRSIIKCTKWLNNHGVELLRQYPQEFHYGTGMTVEEYTHALTVHVERCRAFLESM
Ga0193753_1000017532	3300020034	Soil	MTFRNTTSDDDRRPIIAGFTREDFERLNRLTHARNLRSIIKSTKWLNEHGVELLREYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLESM
Ga0193717_10122994	3300020060	Soil	MTFRDAISDDDRRPIVAGFTREDLERFNRLTHANNLRSIIKCTKWLNDHGVELLRRYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0193717_10217303	3300020060	Soil	MTFRDAISDDDRRPIVAGFTREDLERFNRLTHAKNLRSIIKCTKWLNDHGVELLRRYPQEFRCGTGMTVEEYLHALSVHVDRCRAFLESCEYSHATVETDTPSERS
Ga0193716_11227921	3300020061	Soil	MTFRDAISDDDRRPIVAGFTREDLERFNRLTHAKNLRSIIKCTKWLNDHGVELLRRYPQEFRCGTGMTVEEYLDALSVHVDRCRAFIERM
Ga0210407_107387761	3300020579	Soil	MRKREILSDDDARPIIAGYTREDFERLNRLAHAKNLRSIIKCTKWLNGHGVELLRRYPQEFRSGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0210403_102349072	3300020580	Soil	MRERKLLSDDRRPIIAGFTREDFERLNRLTHAKHLRSIIKCTKWLNGHGVELLRRYPQEFRSGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0210403_103908922	3300020580	Soil	MRERKLLSDVDRRPIIAGFTREDFERLNRLTHAKNLRSIIKCTKWLNDHGVELLRRYPQEFRCGTGMTVEEYLHALTMHVDRCRAFLERM
Ga0210395_108185901	3300020582	Soil	MHKKIVSRDDGRRAVIAGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELLRKYPQDFLDGAGMTVEQYLQALTVHIDCCHILLERIEDSRRP
Ga0210401_105980501	3300020583	Soil	MRERKLLSDDRRPIIAGFTREDFERLNRLTHAKHLRSIIKCTKWLNGHGFELLRRYPQEFRSGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0210401_111680072	3300020583	Soil	LLKSYGKTTMRRSKSDDDRRPIIADFTREDFERLNRLTHARNLLGIIKSTKWLNDHGVELLRRHPGEFHYGTGMTVEQYQHALAVHVDSCRAFLKRI
Ga0210396_102668832	3300021180	Soil	MHKKIVSRDDGRRAVIAGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELMQRYPQDFIDGAGMTVEQYLEALTVHIDCCHLLLKKLEDSRRSHDALQ
Ga0210388_105736662	3300021181	Soil	MIDRRIFSDDGGRPIVAGFTREDFERFNRLTHAKNLRSIIKCTKWLNEHGTELLRRYPQEFHCGTGMTVEEYLHALTVHVDRCRAFLDKM
Ga0210388_117107111	3300021181	Soil	MLLKPSGETTMAKRQILSGNDRQIAGFTREDFERHNRLTHAGNLLGIIKSTKWLNDHGVELLRRYPREFSDGTGMTVEQYRHALSVHVDCCRAFLKKM
Ga0210385_113475402	3300021402	Soil	MRNRQIASDNDPRPILAGFTREDFERHNRSTHARNLRSIIKCTKWLNDHGVELLRQYPGEFHHDTGMTVEQYLHALTVHVDCCRAFLKRM
Ga0210389_100235405	3300021404	Soil	MHKRKVSRDDGRQAIIAGFTREDFERLNRLDHANNLRCIIRGTKWLNDHGVELLRQYPQDFLDGAGMTVEQYLQALTVHIDCCHILLERIEDSRRPHRARQ
Ga0210386_104346842	3300021406	Soil	MLLKSYGKTTMRRSKSDDDRRPIIADFTREDFERLNRLTHARNLLGIIKSTKWLNDHGVELLRRYPQDFFDGAGMTVEQYLQALTVHIDCCHILLKKFEDLTRIA
Ga0210394_100458314	3300021420	Soil	MRKREILSDDDARPIIAGYTREDFERLNRLAHAKNLRSIIKCTKWLNDHGVELLRRYPQEFRHATGITVEQYLQALTVHVDCCHAFLKKM
Ga0210394_104459841	3300021420	Soil	MRKVSISSNGDRRPIIAGFTREDFERLNRLAHARNLRSIIKCTKWLNEHGVELLQRYPQEFRDGTGMTVEQYLRALTVHVECCRAFLKRM
Ga0210394_111678372	3300021420	Soil	MLLKSYGKTTMRRSKSDDDRRPIIADFTREDFERLNRLTHARNLLGIIKSTKWLNDHGVELLRRHPGEFHYGTGMTVEQYQHALTVHVDSCRAFLKRI
Ga0210384_111937242	3300021432	Soil	RRPIIAGFTREDFERLNRLTHAKHLRSIIKCTKWLNGHGVELLRRYPQEFRSGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0210391_100766273	3300021433	Soil	MHKKIVSRDDGRRAVIAGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELLRLYPRDFVDGAGMTVEQYLQALTVHIDCCHNLLKRIEDISRSHDARQ
Ga0210390_101154662	3300021474	Soil	MLLKSYGKTTMRRSKSDDDRRPIIADFTREDFERLNRLTHARNLLGIIKSTKWLNDHGVELLRRHPGEFHYGTGMTVEQYQHALAVHVDSCRAFLKRI
Ga0210392_100977342	3300021475	Soil	MINRSIFSDDDHRPIVAGFTREDFERFNRLTHAKNLRSIIKTTKWLNEHGVELLRRYPQEFRCGTGMTVEEYLQALSVHVDRCRAFLDKM
Ga0210398_116062181	3300021477	Soil	VHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGAELLRRYPQDFLDGAGMTVEQYLQALTVHIDCCHILLKKFEDLARSHDVLQ
Ga0208193_10010046	3300025463	Peatland	MHKRKVSRDDGGRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLRRYPQDFLDGAGMTVEEYLQALTVHIDCCQILLKKIEDSRPSHDAAARVD
Ga0208987_10197332	3300027496	Forest Soil	MMNKRILSDDDRRPIVAGFTREDFERFNRLTHAKHLRSIVKSTKWLNEHGVELLRRYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0209222_10098862	3300027559	Forest Soil	MHKKTVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNHHGVELLRLHPQDFLDGAGMTVEQYLQALTVHIDCCHIFLKKIEDLRRSHDAR
Ga0208042_11788182	3300027568	Peatlands Soil	RRVLSDDDGRAIIAGFTRKDFERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT
Ga0208324_10467112	3300027604	Peatlands Soil	MSKRRVLSDDDGRAIIAGFTRKDFERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKRSGGLEVT
Ga0209221_10066652	3300027609	Forest Soil	MHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIVRGTKWLNYHGFELLRRYPQDFLDGAGMTVEEYLQALTVHIDCCHILLKKIEDSRPSHDAQQ
Ga0209221_11096482	3300027609	Forest Soil	RDDDRQPIIAGFTQEDFERLNRLTHARNLRSVIKCTKWLNDHGIELLRRYPQEFHYGTGMTVEQYLQALTVHVDCCRAFLKKAERLETNMYHIAQ
Ga0209221_11824121	3300027609	Forest Soil	HRCCLCRIVNGKKSSWFGAYSTLPRETTMHKRKISRDDGRRAIIAGFTLEDFERLNRLDHANNLRCIIRGTKWLNDHGVELLQRYPQDFLDGAGMTVEQYLQALTVHIDCCHILLKKIEDSRRSHDARQ
Ga0209333_10905672	3300027676	Forest Soil	MRKGKISRDDDRQPIIAGFTQEDFERLNRLTHARNLRSVIKCTKWLNDHGIELLRRYPQEFHYGTGMTVEQYLQALTVHVDCCRAFLKKAERLETNMYHIAQ
Ga0209038_101378142	3300027737	Bog Forest Soil	MRKVRILSNDDRRPIIAGFAQEDFERLNRLAHAENLRSIIKCTKWLNDHGVELLRQYPQEFRHGTGMTVEQY
Ga0209274_1000005397	3300027853	Soil	MRKASISSNDDRRPIIAGFTQEDFERLNRLAHARNLRSIIKCTKWLNEHGVELLQRYPQEFRDGTGMTVEQYLHALTVHVDCCRAFLKRM
Ga0209517_101377502	3300027854	Peatlands Soil	MSKRRVLSDDDGRAIIAGFTRKDIERLNRLAHAKNLRSIIKCTKWLNYHGVELLRRYPQEFRDGTGMTVEQYLHALTVHIDCCRAFLKKSGGLEVT
Ga0209624_100166883	3300027895	Forest Soil	MHKRKVSRDDGRRAIIADFTREDFERLNRLDHARNLRCIIRGTKWLNYHGVELLRRYPQDFLDGAGMTVEQYLQALTVHIDCCHILLKKFEDLTRTHDALQ
Ga0209624_103172661	3300027895	Forest Soil	MHKRKVSRDDGRRAIIAGFTREDLERLNRLDHAKNLRCIIRGTKWLNYHGFELLRRYPQDFLDGAGMTVEEYLQALTVHIDCCHILLKKIEDSRPSHDAQQ
Ga0209006_100500343	3300027908	Forest Soil	MMHKRKVSRDDGSRAIIAGFTREDFERLNRLDHANNLRCIIRGTKWLNDHGVELLREYPQDFLDGAGMTVEQYLQALTVHIDCCHILLERIEDSRRPHRARQ
Ga0209006_102072351	3300027908	Forest Soil	MINKRIFSDDDRRPIVAGFTREDFERFNRLTHAKHLRSIVQCTKWLNEHGVELLRRYPQEFRCGTGMTVEEYLHALTVHVDRCRAFLERM
Ga0209006_102565581	3300027908	Forest Soil	MHKKIVSRDDGCRAIIGGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELLRLYPRDFLDGAGMTVEQYLQALTVHIDCCHNLLKRIED
Ga0302234_101525592	3300028773	Palsa	MHKRKVSRDDVRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLWRYPQDFLDGAGITVEQYLQALTVHIDCCHILLKKIEDLGRSHDSPQ
Ga0302225_102035672	3300028780	Palsa	MHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLWRYPQDFLDGAGITVEQYLQALTVHIDCCHILLKKIEDLGRS
Ga0311369_104297431	3300029910	Palsa	MHKRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLWRYPQDFLDGAGITVEQYLQALTVHIDCCHILLKKIEDLGRSHDSPQ
Ga0311361_101548753	3300029911	Bog	MQKRKIAGEDNRRAIIAGFSREDFERLNRLDHAKNLRCIIKSTKWLNDHGVELLQLHPKDFCDGAGMTVEQYMQALKVHVDRCHGLLKKIEELKA
Ga0311359_103423673	3300029914	Bog	SRVYTGDDLKARFLDAARGNAMQKRKIAGEDNRRAIIAGFSREDFERLNRLDHAKNLRCIIKSTKWLNDHGVELLQLHPKDFCDGAGMTVEQYMQALKVHVDRCHGLLKKIEELKA
Ga0311343_104688782	3300029953	Bog	LKARFLDAARGNAMQKRKIAGEDNRRAIIAGFSREDFERLNRLDHAKNLRCIIKSTKWLNDHGVELLQLHPKDFCDGAGMTVEQYMQALKVHVDRCHGLLKKIEELKA
Ga0302306_104366821	3300030043	Palsa	MRKREISSDDDRRPIIAGFTREDLERVNRLTHAKNLRSIIKCTKWLNDHGVELLRQYPQEFRCGAGMTVDQYLHALTVHVDCCRAFLERM
Ga0302193_104429041	3300030519	Bog	MQKRKIAGEDNRRAIIAGFSREDFERLNRLDHAKNLRCIIKSTKWLNDHGVELLQLHPKDFCDGAGMTVEQYMQALKVHVD
Ga0311355_115723261	3300030580	Palsa	MRKREISSDDDRRPIIAGFTREDLERVNRLTHAKNLRSIIKCTKWLNDHGVELLRQYPQEFRCGAGMTVDQYLHALTVHVDC
Ga0265462_106217782	3300030738	Soil	MRKIRVLTNDVRRPIIAGFAQEDFERLNRLAHAENLRSIIKCTKWLNDHGVELLRQYPQEFRHGTGMTVEQYLHALTVHVDCCRAFLKRM
Ga0302140_104088602	3300031261	Bog	LKARFLDAARGNAMQKRKIAGEDNRRAIIAGFSREDFERLNRLDHAKNLRCIIKSTKWLNDHGVELLQLHPKDFCDGAGMTVEQYMQALK
Ga0310686_1037142632	3300031708	Soil	VNKRIALGDDEQRAIIAGFTRDDIERLNRLAHAKNLRSVIKCTKWLNDHGIELLRQHPEEFRDGTGMTEEQYLHSLAVHVDRCRTLLKKMGAPEVT
Ga0310686_1143091501	3300031708	Soil	MHKKRVSRDDGCRAIIAGFTREDLERLNRLDHAKNLRGIIRGTKWLNDHGVELLRLYPRDFLDGAGMTVEQYLRALTVHIDCCHNLLKRIEDISRSHDTRQ
Ga0307476_107511692	3300031715	Hardwood Forest Soil	MHNRKVSRDDGRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNDHGVELLRRYPQDFLDGTGMTVEQYLHALTVHIDCCHIFLKKI
Ga0302315_102111512	3300031837	Palsa	GERAYLTLPRETTMHKRKVSRDDVRRAIIAGFTREDFERLNRLDHAKNLRCIIRGTKWLNYHGVELLWRYPQDFLDGAGITVEQYLQALTVHIDCCHILLKKIEDLGRSHDSPQ
Ga0307470_100004187	3300032174	Hardwood Forest Soil	MHKRRVSRDDAHRAIIAGFTRADFERLNRLDHAKNLRCIIKSTKWLNDHGIELLRRYPQDFHDGAGMTVEEYLQALTVHIDRCHGLLKKIEEHKTLT
Ga0307470_105570111	3300032174	Hardwood Forest Soil	MHKRRVSRDDAHRAIIAGFTRADFERLNRLDHAKNLRCIIKSTKWLNDHGIELLRRYPQDFRDGAGMTVEEYLQALTVHIDRCHGLLKKIEERKALS
Ga0335073_1000077332	3300033134	Soil	MRKVRISNEDARRPIIAGFTRDDIERLNRISHARNLRNIIQCTKWLNDHGIELLRLHPQEFQSGTGMTVEQFRHALTVHIDSCRAFLRKM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094165

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences