Metagenome / Metatranscriptome Family F094234

Basic Information
Family ID	F094234
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	51 residues
Representative Sequence	MSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Number of Associated Samples	78
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.02 %
% of genes near scaffold ends (potentially truncated)	23.58 %
% of genes from short scaffolds (< 2000 bps)	97.17 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Most Common Taxonomy
Group	Unclassified (64.151 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.132 % of family members)
Environment Ontology (ENVO)	Unclassified (35.849 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.925 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF11154	DUF2934	34.91
PF05443	ROS_MUCR	27.36
PF12221	HflK_N	1.89
PF13191	AAA_16	0.94
PF00313	CSD	0.94
PF08734	GYD	0.94
PF16177	ACAS_N	0.94
PF00872	Transposase_mut	0.94
PF01425	Amidase	0.94
PF02129	Peptidase_S15	0.94
PF02195	ParBc	0.94
PF16576	HlyD_D23	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG4957	Predicted transcriptional regulator	Transcription [K]	27.36
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.94
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.94
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.94

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
All Organisms	root	All Organisms	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
cellular organisms	root	All Organisms → cellular organisms	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Tepidamorphaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae	1.89 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1.89 %
Rhodovastum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Lutibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	1.89 %
Rhodovastum atsumiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum → Rhodovastum atsumiense	0.94 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.94 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10273063	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1072	Open in IMG/M
3300003219\|JGI26341J46601_10031579	Not Available	1716	Open in IMG/M
3300003505\|JGIcombinedJ51221_10199932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	811	Open in IMG/M
3300003505\|JGIcombinedJ51221_10363207	Not Available	588	Open in IMG/M
3300004092\|Ga0062389_101432266	All Organisms → cellular organisms → Bacteria → Proteobacteria	875	Open in IMG/M
3300004092\|Ga0062389_104912730	Not Available	504	Open in IMG/M
3300004152\|Ga0062386_101469270	Not Available	568	Open in IMG/M
3300005434\|Ga0070709_10529934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	899	Open in IMG/M
3300005439\|Ga0070711_101534112	Not Available	582	Open in IMG/M
3300005591\|Ga0070761_10165683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1299	Open in IMG/M
3300005602\|Ga0070762_10267642	Not Available	1068	Open in IMG/M
3300005610\|Ga0070763_10621266	Not Available	628	Open in IMG/M
3300006052\|Ga0075029_100408407	Not Available	884	Open in IMG/M
3300006052\|Ga0075029_100503578	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300006059\|Ga0075017_100317252	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300006059\|Ga0075017_101165969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300006174\|Ga0075014_100596874	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300009521\|Ga0116222_1439005	Not Available	569	Open in IMG/M
3300010339\|Ga0074046_10301642	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300010339\|Ga0074046_10478635	Not Available	745	Open in IMG/M
3300011120\|Ga0150983_12647417	Not Available	541	Open in IMG/M
3300012181\|Ga0153922_1125648	Not Available	592	Open in IMG/M
3300012951\|Ga0164300_10493799	Not Available	698	Open in IMG/M
3300012951\|Ga0164300_11111900	Not Available	517	Open in IMG/M
3300012957\|Ga0164303_11540705	Not Available	504	Open in IMG/M
3300012958\|Ga0164299_11672095	Not Available	504	Open in IMG/M
3300012960\|Ga0164301_10263737	Not Available	1139	Open in IMG/M
3300012984\|Ga0164309_10206840	Not Available	1354	Open in IMG/M
3300012984\|Ga0164309_10418909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1004	Open in IMG/M
3300012989\|Ga0164305_10635139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	863	Open in IMG/M
3300012989\|Ga0164305_10912253	Not Available	739	Open in IMG/M
3300013306\|Ga0163162_13228939	Not Available	523	Open in IMG/M
3300015206\|Ga0167644_1027473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2352	Open in IMG/M
3300019184\|Ga0184590_111773	Not Available	583	Open in IMG/M
3300019185\|Ga0184587_131645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	892	Open in IMG/M
3300019190\|Ga0184600_125932	Not Available	716	Open in IMG/M
3300020579\|Ga0210407_10416467	Not Available	1051	Open in IMG/M
3300020579\|Ga0210407_10533613	Not Available	916	Open in IMG/M
3300020579\|Ga0210407_10723110	Not Available	771	Open in IMG/M
3300020579\|Ga0210407_10731841	Not Available	766	Open in IMG/M
3300020579\|Ga0210407_10755721	Not Available	752	Open in IMG/M
3300020580\|Ga0210403_11375000	Not Available	536	Open in IMG/M
3300020581\|Ga0210399_10315545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1305	Open in IMG/M
3300020582\|Ga0210395_10339049	Not Available	1130	Open in IMG/M
3300020583\|Ga0210401_11073336	All Organisms → cellular organisms → Bacteria → Proteobacteria	664	Open in IMG/M
3300021168\|Ga0210406_10737690	Not Available	755	Open in IMG/M
3300021170\|Ga0210400_10434138	Not Available	1084	Open in IMG/M
3300021171\|Ga0210405_10168304	Not Available	1736	Open in IMG/M
3300021171\|Ga0210405_10915656	Not Available	665	Open in IMG/M
3300021178\|Ga0210408_10092423	All Organisms → cellular organisms → Bacteria	2375	Open in IMG/M
3300021178\|Ga0210408_11347273	Not Available	539	Open in IMG/M
3300021180\|Ga0210396_11148787	Not Available	652	Open in IMG/M
3300021403\|Ga0210397_10243987	Not Available	1301	Open in IMG/M
3300021403\|Ga0210397_10512207	Not Available	910	Open in IMG/M
3300021405\|Ga0210387_10916487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	770	Open in IMG/M
3300021405\|Ga0210387_11587868	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300021405\|Ga0210387_11766279	Not Available	522	Open in IMG/M
3300021420\|Ga0210394_11189476	Not Available	655	Open in IMG/M
3300021474\|Ga0210390_10193721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1719	Open in IMG/M
3300021474\|Ga0210390_10368293	Not Available	1215	Open in IMG/M
3300021479\|Ga0210410_10190301	All Organisms → cellular organisms → Bacteria	1837	Open in IMG/M
3300021559\|Ga0210409_10418334	Not Available	1198	Open in IMG/M
3300022523\|Ga0242663_1049859	Not Available	735	Open in IMG/M
3300022726\|Ga0242654_10302834	Not Available	588	Open in IMG/M
3300023539\|Ga0247555_102055	Not Available	654	Open in IMG/M
3300023662\|Ga0247545_104762	Not Available	559	Open in IMG/M
3300025915\|Ga0207693_10988934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	643	Open in IMG/M
3300025916\|Ga0207663_10863694	Not Available	722	Open in IMG/M
3300027505\|Ga0209218_1014141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1428	Open in IMG/M
3300027676\|Ga0209333_1139718	Not Available	653	Open in IMG/M
3300027767\|Ga0209655_10187722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300027812\|Ga0209656_10070401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1908	Open in IMG/M
3300027812\|Ga0209656_10255654	Not Available	826	Open in IMG/M
3300027812\|Ga0209656_10367381	Not Available	651	Open in IMG/M
3300027812\|Ga0209656_10461569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300027824\|Ga0209040_10440153	Not Available	596	Open in IMG/M
3300027855\|Ga0209693_10055415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1951	Open in IMG/M
3300028906\|Ga0308309_10330266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1296	Open in IMG/M
3300030763\|Ga0265763_1011312	Not Available	837	Open in IMG/M
3300030805\|Ga0265756_107794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	657	Open in IMG/M
3300030842\|Ga0075404_10685892	Not Available	825	Open in IMG/M
3300030844\|Ga0075377_11695391	Not Available	568	Open in IMG/M
3300030879\|Ga0265765_1043843	Not Available	600	Open in IMG/M
3300030884\|Ga0265758_102045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	840	Open in IMG/M
3300030885\|Ga0265743_111280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Tepidamorphaceae → Lutibaculum	623	Open in IMG/M
3300030885\|Ga0265743_114995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodovastum → Rhodovastum atsumiense	571	Open in IMG/M
3300030913\|Ga0265759_101613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	936	Open in IMG/M
3300030916\|Ga0075386_11856341	Not Available	564	Open in IMG/M
3300030935\|Ga0075401_11948876	Not Available	706	Open in IMG/M
3300031022\|Ga0138301_1654286	Not Available	676	Open in IMG/M
3300031057\|Ga0170834_106266618	Not Available	514	Open in IMG/M
3300031057\|Ga0170834_108065157	Not Available	779	Open in IMG/M
3300031128\|Ga0170823_15007455	Not Available	797	Open in IMG/M
3300031231\|Ga0170824_117514890	Not Available	1084	Open in IMG/M
3300031231\|Ga0170824_122971352	Not Available	1007	Open in IMG/M
3300031469\|Ga0170819_15499274	Not Available	531	Open in IMG/M
3300031469\|Ga0170819_17264494	Not Available	852	Open in IMG/M
3300031474\|Ga0170818_106508545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	757	Open in IMG/M
3300031474\|Ga0170818_108050324	Not Available	901	Open in IMG/M
3300031708\|Ga0310686_102792262	Not Available	605	Open in IMG/M
3300031708\|Ga0310686_116808266	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300031718\|Ga0307474_10586864	Not Available	878	Open in IMG/M
3300032120\|Ga0316053_104051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	890	Open in IMG/M
3300032160\|Ga0311301_10032539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13320	Open in IMG/M
3300032515\|Ga0348332_10180083	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300032515\|Ga0348332_11398018	Not Available	706	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.11%
Host-Associated	Host-Associated	1.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.96%
Aquatic	Environmental → Aquatic	14.15%
Plants	Host-Associated → Plants	0.94%
Fungi	Host-Associated → Fungi	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.08%
Freshwater	Environmental → Aquatic → Freshwater	9.43%
Sediment	Environmental → Aquatic → Sediment	4.72%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%
Mycelium	Host-Associated → Fungi → Mycelium	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.04%
Loam	Environmental → Terrestrial → Soil → Loam	14.15%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.72%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.89%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	40.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.47%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.38%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.94%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.64%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	9.43%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	8.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.66%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.72%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.89%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.89%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.89%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300019184	Soil microbial communities from Bohemian Forest, Czech Republic ? CSA2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019185	Soil microbial communities from Bohemian Forest, Czech Republic ? CSE2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019190	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023539	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023662	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030805	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030844	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA11 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030884	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030885	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030913	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSA6 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030935	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032120	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_102730632	3300001593	Forest Soil	MSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDVA*
JGI26341J46601_100315792	3300003219	Bog Forest Soil	MSWPVILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVEGA*
JGIcombinedJ51221_101999322	3300003505	Forest Soil	MSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVDDA*
JGIcombinedJ51221_103632071	3300003505	Forest Soil	MSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGLVEDA*
Ga0062389_1014322663	3300004092	Bog Forest Soil	MSWPVIWSGVVCVAMLALGFNLLLPLGSSFEAVCILIGVASAMVFFGLVDDA*
Ga0062389_1049127302	3300004092	Bog Forest Soil	MRALAATPWEGPMSWPVFLSGVVCVTMLALGLNLLLPLGSGLETVCVLTGVASAMIFFGLVEGA*
Ga0062386_1014692702	3300004152	Bog Forest Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVACAMVFFGLADGA*
Ga0070709_105299341	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMVF
Ga0070711_1015341122	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	CVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFLGLADDA*
Ga0070761_101656831	3300005591	Soil	MSWLVILSGLVCVTMLALGFNLLLPVGSGFETVCILIGVASAMIFFGLVDDT*
Ga0070762_102676422	3300005602	Soil	MSWPVILSGVLCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVEDA*
Ga0070763_106212662	3300005610	Soil	MSWPVILSGVVFVAMLALGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA*
Ga0075029_1004084072	3300006052	Watersheds	MSWPVILSGVVCVTMLALGFNLLLPLGSGFETACILIGVASAMIFFGLVDDA*
Ga0075029_1005035781	3300006052	Watersheds	LSGGLSEVPMRWPVIMSGVTCVAMLALGLNLLLPLGSGLETVCLLAGVASAMVFFGLVDGA*
Ga0075017_1003172522	3300006059	Watersheds	MRWPVIMSGVVCVAMLALGFNLLLPLGSGLETVCDLAGVASAMVFFCLVEGA*
Ga0075017_1011659691	3300006059	Watersheds	VILSGVVCVAMLALGFNSLLPLGSGLETVCVLIAVASAMVFFGLVDDA*
Ga0075014_1005968741	3300006174	Watersheds	MRWPVIMSGVTCVAMLALGLNLLLPLGSGLETVCLLAGVASAMVFFGLVDGA*
Ga0116222_14390052	3300009521	Peatlands Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETACVLIAVASAMVFFGLEDGA*
Ga0074046_103016422	3300010339	Bog Forest Soil	PVILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVEGA*
Ga0074046_104786352	3300010339	Bog Forest Soil	WPPPQLEVPMSWPVISSGAVCVVMLALGFDLLLPLSSGLESVCILTGVASAMVFFGLVEGA*
Ga0150983_126474172	3300011120	Forest Soil	VSWPVIVSCVVCVTMLALGFNLLLPLGSGLETVCVLIGVASAMVFFGLVDDA*
Ga0153922_11256482	3300012181	Attine Ant Fungus Gardens	MSWPVILSGVVCATMLALGFNLLLPLGSGLETVCVLIAVASATVFFGLMDGA*
Ga0164300_104937992	3300012951	Soil	MNWPVILSGVVCVTTLALGFNLLLPLGSGFETVCILIGVASAMVFFGLVDDA*
Ga0164300_111119002	3300012951	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFLGLADDA*
Ga0164303_115407051	3300012957	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLLGIASAMVFFGLVDNA*
Ga0164299_116720952	3300012958	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLLAVASAMVFFGLVDDA*
Ga0164301_102637372	3300012960	Soil	SGVLCVAMLALGFNLLFPLGGLDTVCVLTGVASAMVFFGLVDGA*
Ga0164309_102068402	3300012984	Soil	MSWPVILSGVVCVAMLVLGFNSLLPLGSGLETVCVLIAVASAMVFFGLLDDA*
Ga0164309_104189091	3300012984	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVFIAVASAVVFFGLVDGA*
Ga0164305_106351392	3300012989	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIGVASAMAFFGLVDDA*
Ga0164305_109122531	3300012989	Soil	MSWHVILSRVVCVAMLALGFNLLLPLGSGLETVCVLIGIASAMVFLGLADDA*
Ga0163162_132289392	3300013306	Switchgrass Rhizosphere	MSWPVILSGVACVTMLALGFNLLLPLGSGLETVCVLIGVASAMVFFGLVDDA*
Ga0167644_10274732	3300015206	Glacier Forefield Soil	MSWPVILSGVVCVAMLALGFNSLLPLGSGLETVCVLIAVASAMVSFSLVDGP*
Ga0184590_1117732	3300019184	Soil	MSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDGA
Ga0184587_1316453	3300019185	Soil	MSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDDA
Ga0184600_1259322	3300019190	Soil	MSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVDDA
Ga0210407_104164671	3300020579	Soil	EVPMSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210407_105336132	3300020579	Soil	MSWPVILSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0210407_107231101	3300020579	Soil	MSWPVILSGVLCVAMLAQGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210407_107318411	3300020579	Soil	MSGPAILSGLVCVAMLALGFNLLLPLGSGFETVCILIGIASAMIFFGLVDDA
Ga0210407_107557212	3300020579	Soil	MSWPVILSGVVFVAMLALGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA
Ga0210403_113750002	3300020580	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210399_103155451	3300020581	Soil	MNGPAILSGVICVAMLALGFNLLLPLGSGFETVCVLTGVAAAMVFFGLVEDA
Ga0210395_103390493	3300020582	Soil	MSWPVIVSGVVCVTMLAPGFNLLLPLGSGLETMCVLIAVASAMVFFGLVDVA
Ga0210401_110733363	3300020583	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210406_107376901	3300021168	Soil	MSWPVVLSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLI
Ga0210400_104341383	3300021170	Soil	MSWPVILSGVVCVAMLAQGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210405_101683043	3300021171	Soil	MSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGLVEDA
Ga0210405_109156562	3300021171	Soil	TNWEVPMSWPVVLGGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0210408_100924232	3300021178	Soil	GLTNWEVPMSWPVILSGVLCVAMLAQGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210408_113472732	3300021178	Soil	MNGPAILSGVVCVAMLALGFNLLLPLGSGLDTVRVLTGVASAMVFFGLVEAA
Ga0210396_111487871	3300021180	Soil	MSWPVILSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGL
Ga0210397_102439873	3300021403	Soil	MSWPVILSGVVCVAMLALGFNLFLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0210397_105122073	3300021403	Soil	MSWPVILSGVVCVTMLALGFNLLLPVGSGLETACVLIAVASAMVFFGLMDGA
Ga0210387_109164871	3300021405	Soil	VKRGLTNWEVPMSWPVVLSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0210387_115878682	3300021405	Soil	MSWSVILTGVVCVAMLAQGFNLLLPLSSGLEAVCVLTGVASAIVFFGLVEDV
Ga0210387_117662791	3300021405	Soil	ALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210394_111894761	3300021420	Soil	AMLVLGFNSLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0210390_101937211	3300021474	Soil	MSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGVE
Ga0210390_103682933	3300021474	Soil	VILSGVVCVAMLALGLNLLLPLGSGLETVCVLIAVASAMVFFGLSDGA
Ga0210410_101903012	3300021479	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLTGVASAIVFFGLVEDV
Ga0210409_104183343	3300021559	Soil	MSWPVILSGVVCVTMLALGFNLLLPVGNGLEAACVLIAVASAIVFFGLMDGA
Ga0242663_10498592	3300022523	Soil	MNGPAILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVDDA
Ga0242654_103028341	3300022726	Soil	MNGPAILSGVICVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFFGLVEDA
Ga0247555_1020552	3300023539	Soil	MSWPVILSGAVCVTMLALGFNLLLPLGSGLETVCILMGVASAMVFFGLVDGA
Ga0247545_1047622	3300023662	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCILMGVASAMVFFGLVDGA
Ga0207693_109889342	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MSWPVILSGVACVTMLALGFNLLLPLGSGFETVCILIGVASAMVFFGLVDDA
Ga0207663_108636942	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSWPVILSGVVCVAMLALGFNLLLPLGSGLETVCVLIAVASAMVFLGLADDA
Ga0209218_10141411	3300027505	Forest Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMVFFGLVDDA
Ga0209333_11397181	3300027676	Forest Soil	PMSWPVILSGVVCVTMLALGFNLLLPLGGGLEAVCVLIAVASAIVFFGLVDGA
Ga0209655_101877221	3300027767	Bog Forest Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCVLIAVASAMVFFGLVDDA
Ga0209656_100704012	3300027812	Bog Forest Soil	MSWPVISSGAVCVVMLALGFDLLLPLSSGLESVCILTGVASAMVFFGLVEGA
Ga0209656_102556542	3300027812	Bog Forest Soil	MSWPMILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVE
Ga0209656_103673811	3300027812	Bog Forest Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVACAMVFFGLADGA
Ga0209656_104615691	3300027812	Bog Forest Soil	PVILSGAACVAMLALGFDLLLPLGSGLESVCVLTGVASAMVFFGLVEGA
Ga0209040_104401531	3300027824	Bog Forest Soil	WPPPQLEVPMSWPVISSGAVCVVMLALGFDLLLPLSSGLESVCILTGVASAMVFFGLVEG
Ga0209693_100554154	3300027855	Soil	MSWPVILSGVVCVAMLALGLNLLLPLGSGLETVCVLIAVASAMVFFGLVDGA
Ga0308309_103302663	3300028906	Soil	VPMSWPVILSGVVCVTMLALGFNLLLPVGNGLETACVLIAVASAIVFFGLMDGA
Ga0265763_10113124	3300030763	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLLDDA
Ga0265756_1077942	3300030805	Soil	MSWPVILSGVVFVAMLPLGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA
Ga0075404_106858921	3300030842	Soil	ALGFNLLLPLGSGFEAVCILIAVASAMVFFGLVDDA
Ga0075377_116953912	3300030844	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGLETACVFIAVASAMVFFGLVDDA
Ga0265765_10438431	3300030879	Soil	MSWPVILSGVVCVTTLALGFNLVLPLGSGFETVCILIAVASAMVFFGLVEGA
Ga0265758_1020453	3300030884	Soil	MSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMIFFGLVEDA
Ga0265743_1112802	3300030885	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIAVASPMVFFGLVDDA
Ga0265743_1149952	3300030885	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIGVASAMAFFGLVDDA
Ga0265759_1016133	3300030913	Soil	MSRPVILSGVVCVTMLAVGFNLLLPLGSGLETVCVLIAVASAMVFFGLVDDA
Ga0075386_118563412	3300030916	Soil	MNWPVILSGVVSVAALALGFNLLLPLGSGLEPVCVLTGVASAMVFF
Ga0075401_119488762	3300030935	Soil	ALGFNLLLPLGSGFEAMCILIAVASAMVFFGLLDDA
Ga0138301_16542862	3300031022	Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETVCVLIAVASASFGLVDDE
Ga0170834_1062666182	3300031057	Forest Soil	MNGPAILSGVVCVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFF
Ga0170834_1080651572	3300031057	Forest Soil	MSRPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVASAMIFFGLVDDA
Ga0170823_150074552	3300031128	Forest Soil	MNGPAILSGVVCVAMLALGFNLLLPLGSGLETACVLTAVASAMVFFGVVDDA
Ga0170824_1175148902	3300031231	Forest Soil	MNGPAILSGVVCVAMLALGFNLLFPLGSGLDTVCVLTGVASAMVFFGLVEDV
Ga0170824_1229713522	3300031231	Forest Soil	MSWPVILSGVVCVTTLAMGFNLLLPLGSGLETVCVLIAVASAIVFFGLVDGA
Ga0170819_154992741	3300031469	Forest Soil	MNWPVILSGVVSVAALALGFDLLLPLGSGLEPVCVLTGVASAMVFFGLVEGA
Ga0170819_172644942	3300031469	Forest Soil	MSWPVILSGVVCVTTLAMGFNLLLPLGSGLETVCVLTAVASAIVFFGLVDGA
Ga0170818_1065085452	3300031474	Forest Soil	MNWPVILSGVVCLTMLALGFDLLLPLGSVLEPVCLLTGVASAMVFFGLVEGA
Ga0170818_1080503241	3300031474	Forest Soil	MCSLADTNWEVPMSGPAILSGLVCVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFFGLVDGA
Ga0310686_1027922621	3300031708	Soil	MSWPVILSGVVCVAMLALGFNLLLPLGSGLDTVCVLTGVASAMVFFGLVD
Ga0310686_1168082662	3300031708	Soil	GVVCVTMLALGFNLLLPLGSGLETVCVLIAVASAMVFFGLVEDA
Ga0307474_105868642	3300031718	Hardwood Forest Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLEAVCVLIAVASAMVFFGLVDDA
Ga0316053_1040511	3300032120	Soil	MSWPVILSGVVCVAMLALGFNLLLSLGSGFETVCTLIGVASAMMFFGLVDDA
Ga0311301_100325397	3300032160	Peatlands Soil	MSWPVILSGVVCVTMLALGFNLLLPLGSGLETACVLIAVASAMVFFGLADGA
Ga0348332_101800832	3300032515	Plant Litter	MSWPVILSGVVLVAMLALGFNLLLPLGSGFETVCVLIGVVSAMIFFGLVDDA
Ga0348332_113980181	3300032515	Plant Litter	MSWPVILSGVVCVAMLALGFNLLLPLGSGFETVCILIGVSSAMIFFGLVDDA

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094234

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign