Metagenome / Metatranscriptome Family F094303

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094303
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	121 residues
Representative Sequence	MMNRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARAQSRA
Number of Associated Samples	94
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	31.43 %
% of genes near scaffold ends (potentially truncated)	37.74 %
% of genes from short scaffolds (< 2000 bps)	69.81 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.623 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (9.434 % of family members)
Environment Ontology (ENVO)	Unclassified (34.906 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.321 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.67% β-sheet: 0.00% Coil/Unstructured: 53.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
c.52.1.24: Exodeoxyribonuclease V beta chain (RecB), C-terminal domain	d1w36b3	1w36	0.54576
e.6.1.1: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains	d1rx0a2	1rx0	0.53477
c.37.1.11: RecA protein-like (ATPase-domain)	d1gl6a_	1gl6	0.53128
e.6.1.0: automated matches	d5zw7a1	5zw7	0.52961
c.27.1.1: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	d1k8ea2	1k8e	0.52721

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00270	DEAD	13.21
PF00271	Helicase_C	12.26
PF12680	SnoaL_2	9.43
PF08281	Sigma70_r4_2	6.60
PF12681	Glyoxalase_2	1.89
PF00903	Glyoxalase	1.89
PF08212	Lipocalin_2	0.94
PF12867	DinB_2	0.94
PF04055	Radical_SAM	0.94
PF03807	F420_oxidored	0.94
PF13545	HTH_Crp_2	0.94
PF00106	adh_short	0.94
PF12852	Cupin_6	0.94
PF04851	ResIII	0.94
PF01645	Glu_synthase	0.94
PF13474	SnoaL_3	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.94
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.94
COG3040	Bacterial lipocalin Blc	Cell wall/membrane/envelope biogenesis [M]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.62 %
Unclassified	root	N/A	10.38 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.66 %
Unclassified	root	N/A	10.38 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.77 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	53.77 %
Unclassified	root	N/A	10.38 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.83 %
Unclassified	root	N/A	10.38 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.94 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.94 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.83 %
Unclassified	root	N/A	10.38 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	0.94 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.83 %
Unclassified	root	N/A	10.38 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.94 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.83 %
Unclassified	root	N/A	10.38 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	0.94 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.83 %
Unclassified	root	N/A	10.38 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	0.94 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	0.94 %
Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105022722	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105030541	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300000955\|JGI1027J12803_100736368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300000955\|JGI1027J12803_107936045	Not Available	706	Open in IMG/M
3300001431\|F14TB_105107245	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300003993\|Ga0055468_10194780	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300004157\|Ga0062590_100187844	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1475	Open in IMG/M
3300004480\|Ga0062592_100032388	All Organisms → cellular organisms → Bacteria	2603	Open in IMG/M
3300004643\|Ga0062591_102015097	Not Available	595	Open in IMG/M
3300004800\|Ga0058861_11386796	Not Available	788	Open in IMG/M
3300004803\|Ga0058862_10029979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1210	Open in IMG/M
3300005289\|Ga0065704_10163201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1340	Open in IMG/M
3300005294\|Ga0065705_10111076	All Organisms → cellular organisms → Bacteria → Proteobacteria	4265	Open in IMG/M
3300005295\|Ga0065707_10094138	All Organisms → cellular organisms → Bacteria → Proteobacteria	3533	Open in IMG/M
3300005330\|Ga0070690_100242694	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1271	Open in IMG/M
3300005335\|Ga0070666_10304326	All Organisms → cellular organisms → Bacteria → Proteobacteria	1136	Open in IMG/M
3300005336\|Ga0070680_100432174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1124	Open in IMG/M
3300005354\|Ga0070675_100142188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2051	Open in IMG/M
3300005354\|Ga0070675_100181627	All Organisms → cellular organisms → Bacteria	1819	Open in IMG/M
3300005364\|Ga0070673_100820213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300005367\|Ga0070667_100335332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1367	Open in IMG/M
3300005434\|Ga0070709_10435301	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300005437\|Ga0070710_10839150	Not Available	659	Open in IMG/M
3300005457\|Ga0070662_100156881	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1777	Open in IMG/M
3300005533\|Ga0070734_10165288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1281	Open in IMG/M
3300005543\|Ga0070672_100479613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300005544\|Ga0070686_100061251	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2431	Open in IMG/M
3300005577\|Ga0068857_101204959	Not Available	733	Open in IMG/M
3300005598\|Ga0066706_11176188	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300005618\|Ga0068864_100217873	All Organisms → cellular organisms → Bacteria	1760	Open in IMG/M
3300005843\|Ga0068860_100349373	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300006173\|Ga0070716_100265879	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300006196\|Ga0075422_10274301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
3300006755\|Ga0079222_11639415	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300006796\|Ga0066665_10770290	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300006797\|Ga0066659_10887514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300006844\|Ga0075428_100152590	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2509	Open in IMG/M
3300006846\|Ga0075430_100239463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1504	Open in IMG/M
3300006847\|Ga0075431_100243736	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300006853\|Ga0075420_100121645	All Organisms → cellular organisms → Bacteria	2299	Open in IMG/M
3300006880\|Ga0075429_100064197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3198	Open in IMG/M
3300009012\|Ga0066710_100039450	All Organisms → cellular organisms → Bacteria	5674	Open in IMG/M
3300009094\|Ga0111539_10057473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4620	Open in IMG/M
3300009100\|Ga0075418_10011287	All Organisms → cellular organisms → Bacteria	9973	Open in IMG/M
3300009137\|Ga0066709_100118446	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3302	Open in IMG/M
3300009137\|Ga0066709_101078672	All Organisms → cellular organisms → Bacteria	1180	Open in IMG/M
3300009148\|Ga0105243_12033885	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300009162\|Ga0075423_10332217	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1593	Open in IMG/M
3300009177\|Ga0105248_10248989	All Organisms → cellular organisms → Bacteria	2000	Open in IMG/M
3300009177\|Ga0105248_12704628	Not Available	566	Open in IMG/M
3300009551\|Ga0105238_10909066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300009551\|Ga0105238_11388457	Not Available	729	Open in IMG/M
3300010397\|Ga0134124_10154575	All Organisms → cellular organisms → Bacteria	2049	Open in IMG/M
3300010399\|Ga0134127_10175068	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300010403\|Ga0134123_11661249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300011440\|Ga0137433_1018433	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2028	Open in IMG/M
3300012913\|Ga0157298_10026680	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1150	Open in IMG/M
3300012958\|Ga0164299_10120552	Not Available	1401	Open in IMG/M
3300012960\|Ga0164301_10086003	All Organisms → cellular organisms → Bacteria	1757	Open in IMG/M
3300012988\|Ga0164306_11099101	Not Available	661	Open in IMG/M
3300012989\|Ga0164305_11849394	Not Available	547	Open in IMG/M
3300013105\|Ga0157369_11190088	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	778	Open in IMG/M
3300013297\|Ga0157378_10931298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	901	Open in IMG/M
3300013306\|Ga0163162_11264152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	838	Open in IMG/M
3300014326\|Ga0157380_11587206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	709	Open in IMG/M
3300014969\|Ga0157376_10660225	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300014969\|Ga0157376_10932488	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300015200\|Ga0173480_10607697	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300015371\|Ga0132258_10061092	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	8681	Open in IMG/M
3300015371\|Ga0132258_10511362	All Organisms → cellular organisms → Bacteria	3005	Open in IMG/M
3300015371\|Ga0132258_10596588	All Organisms → cellular organisms → Bacteria	2772	Open in IMG/M
3300015371\|Ga0132258_10703981	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2543	Open in IMG/M
3300015372\|Ga0132256_100112634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2670	Open in IMG/M
3300015373\|Ga0132257_100793389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1182	Open in IMG/M
3300015374\|Ga0132255_100212436	All Organisms → cellular organisms → Bacteria	2743	Open in IMG/M
3300015374\|Ga0132255_100355736	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2122	Open in IMG/M
3300015374\|Ga0132255_103846242	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	638	Open in IMG/M
3300018466\|Ga0190268_11311598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29	611	Open in IMG/M
3300019362\|Ga0173479_10255377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300025903\|Ga0207680_10359662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300025906\|Ga0207699_10367714	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300025912\|Ga0207707_10100880	All Organisms → cellular organisms → Bacteria → Acidobacteria	2522	Open in IMG/M
3300025917\|Ga0207660_10093815	All Organisms → cellular organisms → Bacteria	2230	Open in IMG/M
3300025918\|Ga0207662_10094936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1840	Open in IMG/M
3300025921\|Ga0207652_11344633	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300025923\|Ga0207681_10145810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1769	Open in IMG/M
3300025926\|Ga0207659_10051026	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300025933\|Ga0207706_10909289	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300025960\|Ga0207651_10222481	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1527	Open in IMG/M
3300026067\|Ga0207678_11876162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300026095\|Ga0207676_10200199	All Organisms → cellular organisms → Bacteria	1764	Open in IMG/M
3300026324\|Ga0209470_1090828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384	Open in IMG/M
3300027543\|Ga0209999_1087115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300027909\|Ga0209382_10516901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1313	Open in IMG/M
3300028587\|Ga0247828_10500378	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	722	Open in IMG/M
3300031226\|Ga0307497_10209726	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	849	Open in IMG/M
3300031538\|Ga0310888_10274556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	954	Open in IMG/M
3300031547\|Ga0310887_10022419	All Organisms → cellular organisms → Bacteria	2525	Open in IMG/M
3300031854\|Ga0310904_10055183	All Organisms → cellular organisms → Bacteria	2002	Open in IMG/M
3300031943\|Ga0310885_10027520	All Organisms → cellular organisms → Bacteria	2190	Open in IMG/M
3300031944\|Ga0310884_10448447	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300032000\|Ga0310903_10022379	All Organisms → cellular organisms → Bacteria	2159	Open in IMG/M
3300032012\|Ga0310902_10013917	All Organisms → cellular organisms → Bacteria	3370	Open in IMG/M
3300032122\|Ga0310895_10023573	All Organisms → cellular organisms → Bacteria	2022	Open in IMG/M
3300032783\|Ga0335079_10469407	All Organisms → cellular organisms → Bacteria → Acidobacteria	1347	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	51.89%
Host-Associated	Host-Associated	48.11%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	50.00%
Plants	Host-Associated → Plants	46.23%
Aquatic	Environmental → Aquatic	1.89%
Human	Host-Associated → Human	1.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.15%
Digestive System	Host-Associated → Human → Digestive System	1.89%
Marine	Environmental → Aquatic → Marine	0.94%
Sediment	Environmental → Aquatic → Sediment	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.21%
Loam	Environmental → Terrestrial → Soil → Loam	11.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.49%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.66%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.89%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.21%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.38%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.89%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.49%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.55%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.77%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.77%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.89%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1050227221	3300000364	Soil	NRTDFPATPGDVAALTRQEFTFDLDELDGNXVPSMERVCRTFMDDANRALVWWIRFEALKSWCARTDVIARLNSGSVTLRDACDVAASFPLNHQWEFEPDNFCLAIEAATVGRARAGSDR
INPhiseqgaiiFebDRAFT_1050305412	3300000364	Soil	MMNRTVFPATPDEVAVLTTQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARSQA*
JGI1027J12803_1007363681	3300000955	Soil	PDEVAVLTTQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARSQA*
JGI1027J12803_1079360451	3300000955	Soil	NRTDFPATPGDVAALTRQEFTFDLDELDGNRVPSMERVCRTFMDDANRALVWWIRFEALKSWCARTDVIARLNSGSVTLRDACDVAASFPLNHQWEFEPDNFCLAIEAATVGRARAGSDR
F14TB_1051072452	3300001431	Soil	MNRTAFPSGETNIFSLTPQEFTFDLDNLDGNDAPWMDRVCRIFMDDANRALVWWIRFGALKAWCARTDVVAGLNSGSMTLQDARDVAASFPLNHCWEFEPALFYSALEAMTVRRARARSKA*
Ga0055468_101947801	3300003993	Natural And Restored Wetlands	LNHTDFPATPGDVATLTVQEFTLDLDELDGSRVPSMTRVCRMFTDDVNRALVWWIRFGALKAWCARADALARLTSDSSTVRVACEVAASFPLNHRWEFEVEHFSSAIEAATARRARAGSAR*
Ga0062590_1001878442	3300004157	Soil	VAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTEA*
Ga0062592_1000323881	3300004480	Soil	PDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTEA*
Ga0062591_1020150971	3300004643	Soil	MNPTTFPATPADVVTLTVQEFIFDLDELDGNRIPSMERVCRTFMDDANRALVWWIRFGALKNWCARTDVIGRSTAAPWTSRDACEVAASFPLNHLW
Ga0058861_113867961	3300004800	Host-Associated	MNVTSFPATSDDVVTLSIQEFTFDLDDFDGNGAPSMERVCRTFLDDTNRAIVWWIRFTALKTWCSRTEVLARSTSGTWTLRDACEVAASFPLNHDWEFDPAPFDSAIDAATERRARRAA*
Ga0058862_100299792	3300004803	Host-Associated	MNRTDFPATPGDVATLTPQEFTFDLDELDGKRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSGSMTLRDACDVAASFPLNHRWEFEADDFCSAIERLCRRSGR*
Ga0065704_101632011	3300005289	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAALTPQDFTIDLDDLDGNQAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMTLQDARDVAASFPLNHCWEFEPAPFYSALEAV
Ga0065705_101110761	3300005294	Switchgrass Rhizosphere	MMKNRTAFPATPDEVAALTPQDFTIDLDDLDGNQAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMTLQDARDVAASFPLNHCWEFEPAPFYSALEAVTVRRARARSKA*
Ga0065707_100941382	3300005295	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAALTPQDFTIDLDDLDGNQAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMTLQDARDVAASFPLNHCWEFEPAPFYSALEAVTVRRARARSKA*
Ga0070690_1002426944	3300005330	Switchgrass Rhizosphere	MMMIRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTKA*
Ga0070666_103043261	3300005335	Switchgrass Rhizosphere	RLVMMMIRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA*
Ga0070680_1004321741	3300005336	Corn Rhizosphere	MMMNRTAFPATPNEVAALTPQEFTFDLDDLDGNHAPSMDRVCRTFLDDTNRALVWWIRFGALKAWCARTEVMARLNSGSMTLQDARDVASSFPLNHCWEFEPAPFYSALEAMTVRRARARSKA*
Ga0070675_1001421883	3300005354	Miscanthus Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDVADINGNEAPSMDRVCETFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEA
Ga0070675_1001816274	3300005354	Miscanthus Rhizosphere	TPDEVAVLTPQEFTFDVADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTKA*
Ga0070673_1008202131	3300005364	Switchgrass Rhizosphere	MMMIRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSAARARTKA*
Ga0070667_1003353323	3300005367	Switchgrass Rhizosphere	MMMIRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRR
Ga0070709_104353012	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VSVSDRSQSESNRTDFPTTPGDVAVLTIQEFTLDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFEALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0070710_108391502	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MNVTSFPATSDDVVTLSIQEFTFDLDDFDGNGAPSMERVCRTFLDDTNRVIVWWLRFTALKTWCSRTEVLARSTSGTWTLRDACEVAASFPLNHDWEFDPA
Ga0070662_1001568812	3300005457	Corn Rhizosphere	MMNRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARAQSRA*
Ga0070734_101652881	3300005533	Surface Soil	MNPTAFPATPGEVAVLTPQEFAVDLDELDGNRVPSLERVCRTFTADANRALVWWIRFKALKVWCTRSEVTSRLDLGPLTLRRACSVAASFPLNPQWEFEPEDFYSAIEALDHGRDGTISPP*
Ga0070672_1004796131	3300005543	Miscanthus Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDVADINGNEAPSMDRVCETFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTKA*
Ga0070686_1000612515	3300005544	Switchgrass Rhizosphere	MMNRTAFPATPDEVAVLTPQEFTFDLADINGHEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARAQ
Ga0068857_1012049592	3300005577	Corn Rhizosphere	MNPTTFPATPADVVTLTVQEFIFDLDELDGNRIPSMERVCRTFMDDANRALVWWIRFGALKNWCARTDVIGRSTSAPWTSRDACEVAASFPLNHLWEFDPEGFGFAVETVAVRRAQA*
Ga0066706_111761881	3300005598	Soil	RSGQLTWDPDVKHTAFPATPGDVAALTVQEFTVDLDELDRNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPNDFCSATEAVTVRRAQAGADR*
Ga0068864_1002178733	3300005618	Switchgrass Rhizosphere	TFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTEA*
Ga0068860_1003493732	3300005843	Switchgrass Rhizosphere	MMNRTAFPATPDEVAVLTPQEFTFDVADINGNEAPSMDRVCETFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILEDGRDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTKA*
Ga0066656_101678984	3300006034	Soil	SGGDWGSDDLDTGRSSRSGQLTWDPDVKHTAFPATPGDVAALTVQEFTVDLDELDRNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPNDFCSATEAVTVRRAQAGADR*
Ga0070716_1002658792	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	EFTFDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFEALKLWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0075422_102743011	3300006196	Populus Rhizosphere	MMMNRTAFPTTPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMTRLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRR
Ga0079222_116394152	3300006755	Agricultural Soil	MTQPTAFPTTPSEVAVLTLQEFTFDLDELDGNRVPSLERVCRTFMTDANRALVWWIRFRALKVWCTRAEVIARLNVGSVTLRGACSVAASFPLNHQWEFEPDDFYSAVEALDQ*
Ga0066665_107702902	3300006796	Soil	VKHTAFPATPGDVAALTVQEFTVDLDELDRNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPYDFCSATEA
Ga0066659_108875142	3300006797	Soil	SGQLTWDPDVKHTAFPATPGDVAALTVQEFTVDLDELDRNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPNDFCSATEAVTVRRAQAGADR*
Ga0075428_1001525901	3300006844	Populus Rhizosphere	MMMNRTAFPTTPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMTRLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRA
Ga0075430_1002394631	3300006846	Populus Rhizosphere	MMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMTRLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGGAARARSKA*
Ga0075431_1002437363	3300006847	Populus Rhizosphere	MMMNRTAFPTTPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVVARLNSGSMTLQDARDVASSFPLNHCWEFEPAPFYSALEAMTVRRARARSKA*
Ga0075420_1001216451	3300006853	Populus Rhizosphere	FPTTPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMTRLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGGAARARSKA*
Ga0075429_1000641976	3300006880	Populus Rhizosphere	MMMNRTAFPTTPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGGAA
Ga0066710_1000394503	3300009012	Grasslands Soil	VKHTAFPATPGDVAALTVQEFTIDLDELDGNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPNDFCSATEAVTVRRAQAGAD
Ga0111539_100574732	3300009094	Populus Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMTRLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGGAARARSKA*
Ga0075418_100112879	3300009100	Populus Rhizosphere	MMMNRTAFPTTPDEVAVLTPQEFTFDLDDLDGNHAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARSDVMTRLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGGAARARSKA*
Ga0066709_1001184463	3300009137	Grasslands Soil	VKHTAFPATPGDVAALTVQEFTVDLDELDRNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPNDFCSATEAVTVRRAQAGADR*
Ga0066709_1010786722	3300009137	Grasslands Soil	VNPTAFPVTPGDVAALTVQEFTFDVDELDGNRAPSMERVCRTFMDDANRALVWWIRFGALNAWYARADVMARTSGSSTLRDARAAAASFPLNHRWEFDHEDFGCAIEAVTVKRARTGAV*
Ga0105243_120338851	3300009148	Miscanthus Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDVADITGNEAPSMDRVCETFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA
Ga0075423_103322171	3300009162	Populus Rhizosphere	VKHTAFPATPGDVAALTVQEFTVDLDELDGNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPDDFCSATEAVTVRRAQAGADR*
Ga0105248_102489892	3300009177	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARAQSRA*
Ga0105248_127046282	3300009177	Switchgrass Rhizosphere	GDVAVLTTQEFTFDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFEALKLWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0105238_109090661	3300009551	Corn Rhizosphere	MQMTQPTAFPTTPSEVAVLTLQEFTFDLDELDGNRVPSLERVCRTFMTDANRALVWWIRFRALKVWCTRAEVIARLNVGSVTLRGACSVAASFPLNHQWEFEPDDFYSAVEALDQ*
Ga0105238_113884571	3300009551	Corn Rhizosphere	MNRTDFPATPGDVATLTPQEFTFDLDELDGKRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0134124_101545751	3300010397	Terrestrial Soil	MNRTDFPATPGDVATLTPQEFTFDLDELDGKRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSGSMTLRDACDVAASFPLNHRWEFEMNDFCSATEAVTVRRARAASDR*
Ga0134127_101750683	3300010399	Terrestrial Soil	MMMKRTAFPATPDEVAALTPQEFTFDLDDLDGNHAPSMDRVCRTFLDDTNRALVWWIRFGALKAWCARTEVMARLNSGSMTLQDARDVASSFPLNHCWEFEPAPFYSALEAMTVRRARARSKA*
Ga0134123_116612492	3300010403	Terrestrial Soil	MMMNRTAFPATPNEVAALTPQEFTFDLDDLDGNHAPSMDRVCRTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMTLQDARDVASSFPLNHCWEFEPAPFYSALEAMTVRRARARSKA
Ga0137433_10184332	3300011440	Soil	MMMDRTAFPTTPDEVAALTPQEFTFDLNDLDGNHAPSMDRVCRTFMDDANRALVWWIRFGALKAWCARTEVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARARSKA*
Ga0157298_100266802	3300012913	Soil	MMNRTAFPATPDEVAVLTPQEFTFDLADINGHEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVIGRSTAAPWTSRDACEVAASFPLNHLWEFD
Ga0164299_101205522	3300012958	Soil	VAVLTIQEFTLDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFAALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0164301_100860032	3300012960	Soil	VSVSDRSQSESNRTDFPTTPGDVAVLTTQEFIFDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFEALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0164306_110991012	3300012988	Soil	VAVLTIQEFTLDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFEALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0164305_118493942	3300012989	Soil	MNRTDFAATPGDVAVLTAQEFTFDLDELDGNRVPSMEQVCRTFMDDANRAIVWWIRFEALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAATVRRARADSDR*
Ga0157369_111900881	3300013105	Corn Rhizosphere	MNRTDFPATPGDVATLTPQEFTFDLDELDGKRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSGSMTLRDACDVAASFPLNHRWEFEADDFCSAI
Ga0157378_109312982	3300013297	Miscanthus Rhizosphere	MMTNRTAFPAKPDEVAVLTPQEFTFDLADINGNEAPSIDRVCQTFMDDANRALVWWIRFGALKAWSARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA*
Ga0163162_112641523	3300013306	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNHPPSMDRVCRTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSAARARTKA*
Ga0157380_115872061	3300014326	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSAARARTKA*
Ga0157376_106602252	3300014969	Miscanthus Rhizosphere	MNQTIFPVTPGDVAVLTVKEFTFDLDELDEDRGPSMERVCRSFTDDENRALVWWIRFGALKTWFATTDVTARVSDSLTLRDACEAAASFPLNHRWEFDPDDFGSAVEAVAVRRASGRPE*
Ga0157376_109324882	3300014969	Miscanthus Rhizosphere	DRSQSESNRTDFPATPGDVAVLTTQEFIFDLEELDGSCVPSMERVCRTFLDDANRALVWWIRFAALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR*
Ga0173480_106076972	3300015200	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA*
Ga0132258_1006109210	3300015371	Arabidopsis Rhizosphere	AKPGDVAALSVQEFILDLGDLDGNRAPSLQRVCQSFLDDANRAVVWWIRFEALKAWCARTDVIARLNAGSVTLRDACDVAASFPLNHHWEFEPDDFCSATEAVTVRRAQGREPIDDAVATPPGQATPPASREITPS*
Ga0132258_105113624	3300015371	Arabidopsis Rhizosphere	MNRTDFPATPGEVAALTPQEFTFDLDELDRNRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSDSMTLRDACDVAASFPLNHRWEFEADDFCSAIERCRRGG*
Ga0132258_105965881	3300015371	Arabidopsis Rhizosphere	VKHTAFPATPGDVAALTVQEFTVDLDELDGNRAPSIDRVCRSFTDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHHWEFEPDDFCSATEAVTVRRAQAGAD
Ga0132258_107039811	3300015371	Arabidopsis Rhizosphere	MRSWSGLIRIPTMNDTVFPVTPADVAMLTIQEFTFDLDELDANRVPSMDRVCRSFMDDTNRALVWWIRFGALKNWCAAAGIMARSTSDAWVLRDACEVAASFPLNYLWEFDPTDFGVAVEGVGMRRAQASPSQSL*
Ga0132256_1001126342	3300015372	Arabidopsis Rhizosphere	VKHTAFPATPGDVAALTVQEFTVDLDELDGNRAPSIDRVCRSFTDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHHWEFEPDDFCSATEAVTVRRAQGREPIDDAVATPPGQATPPASREITPS*
Ga0132257_1007933892	3300015373	Arabidopsis Rhizosphere	AFPATPGDVAALTVQEFTVDLDELDGNRAPSIDRVCRSFTDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHHWEFEPDDFCSATEAVTVRRAQGREPIDDAVATPPGQVTPPASREITPS*
Ga0132255_1002124362	3300015374	Arabidopsis Rhizosphere	VAVTRTELAQVTTMNRTDFPATPGEVAALTPQEFTFDLDELDRNRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSDSMTLRDACDVAASFPLNHRWEFEADDFCSAIERCGRGG*
Ga0132255_1003557363	3300015374	Arabidopsis Rhizosphere	VKHTAFPATPGDVAALTVQEFTVDLDELDGNRAPSIDRVCRSFTDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHHWEFEPDDFCSATEAVTVRRAQGREPIDDAVATPPGQVTPPASREITPS*
Ga0132255_1038462422	3300015374	Arabidopsis Rhizosphere	MNDTVFPVTPADVAMLTIQEFTFDLDELDANRVPSMDRVCRSFMDDTNRALVWWIRFGALKNWCAAAGIMARSTSDAWVLRDACEVAASFPLNYLWEFDPTDFGVAVEGVGMRRAQASPSQSL*
Ga0190268_113115981	3300018466	Soil	RRSPRRGRVAVALTAFPATPRDVAVLSIQEFTSELDESQVPSLDRVCRTFTDDANRALVWWIRFGALQAWQARTDVMAQLNSGFVTMHDACELAASFPLNHHWEFEPNAFCSAIAAVTVRRTRTTPDC
Ga0173479_102553772	3300019362	Soil	VAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA
Ga0207680_103596622	3300025903	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDVADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA
Ga0207699_103677141	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	IQEFTLDLDELDGSRVPSMERVCRTFLDDANRALVWWIRFEALKIWRARTDVTARLNSGSMTLRDACDVAASFPLNHRWEFETNDFCSAIEAVTTRRARAESDR
Ga0207707_101008803	3300025912	Corn Rhizosphere	MNRTDFPATPGDVATLTPQEFTFDLDELDGKRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSGSMTLRDACDVAASFPLNHRWEFEADDFCSAIERLCRRSGR
Ga0207660_100938154	3300025917	Corn Rhizosphere	MMMKRTAFPATPDEVAALTPQEFTFDLDDLDGNHAPSMDRVCRTFLDDTNRALVWWIRFGALKAWCARTEVMARLNSGSMTLQDARDVASSFPLNHCWEFEPAPFYSALEAMTVRRARARSKA
Ga0207662_100949362	3300025918	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDLADINGHEAPSMDRVCQTFMDDANRALVWWIRFGALKAWSARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPVRFSSALAAV
Ga0207652_113446332	3300025921	Corn Rhizosphere	MNRTDFPATPGDVATLTPQEFTFDLDELDGKRVPSMERVCRTFMDDANRALVWWIRFEALKIWCARTDVMAQLNSGSMTLRDACDVAASFPLNHRWEFEADDFCSAIDRLCRRSGR
Ga0207681_101458102	3300025923	Switchgrass Rhizosphere	MMMNRTAFPATPDEVAVLTPKEFTFDVADINGNEAPSMDRVCETFMDDANRALVWWIRFGALKAWCARTDVMARLNAGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSAAR
Ga0207659_100510263	3300025926	Miscanthus Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDVADINGNEAPSMDRVCETFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTKA
Ga0207706_109092892	3300025933	Corn Rhizosphere	MMMNRTAFPATPDEVAVLTPQEFTFDLADINGHEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSAARARTKA
Ga0207651_102224812	3300025960	Switchgrass Rhizosphere	MMMIRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARAQSRA
Ga0207678_118761621	3300026067	Corn Rhizosphere	ADINGHEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRAALQSRGSVARARTKA
Ga0207676_102001991	3300026095	Switchgrass Rhizosphere	EFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGLMILQDARDVAASFPLNDLWEFEPAPFSSALEAVTVRRARARTEA
Ga0209470_10908282	3300026324	Soil	VKHTAFPATPGDVAALTVQEFTVDLDELDRNRAPSIDRICRSFMDDANRALVWWIRFEALKAWCDRTDVIARLNSGSVTLRDACDVAASFPLNHLWEFEPNDFCSATEAVTVRRAQAGAD
Ga0209999_10871152	3300027543	Arabidopsis Thaliana Rhizosphere	MMMIRTAFPATPDEVAVLTPQEFTFDLDDLDGNLAPSMDRVCRTFIVDANRALVWWIRFGALKAWCARTDVMARLNSGSMTLQDARDVAASFPLNHCWEFEPAPFFPLSRR
Ga0209382_105169012	3300027909	Populus Rhizosphere	MMMNRTAFPATPDEVAALTPQEFTFDLDDLDGNHAPSMDRVCRTFMDDANRALVWWIRFGALKAWCARTDVVARLNSGSMTLQDARDVASSFPLNHCWEFEPAPFYSALEAMTVRRARARSKA
Ga0247828_105003782	3300028587	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLAPSMDLVCRTFIDDTNRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARAQTKA
Ga0307497_102097261	3300031226	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLADINGNEAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMILQDARDVAAGFPLNDLWEFEPAPFSSALEAVTVRRARAQSRA
Ga0310888_102745564	3300031538	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLAPSMDLVCRTFIDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVG
Ga0310887_100224192	3300031547	Soil	MMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLTPSMDLVCRTFIDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARAQTKA
Ga0310904_100551834	3300031854	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLTPSMDLVCRTFIDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARAQTKA
Ga0310885_100275204	3300031943	Soil	MMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLAPSMDLVCRTFIDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARAQTKA
Ga0310884_104484472	3300031944	Soil	ATPDEVAALTPQEFTFDLDDLDGNHPPSMDRVCRTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARAQTKA
Ga0310903_100223793	3300032000	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLAPSTDLVCRTFIDDTNRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFFSALEAVTVRRARARSKA
Ga0310902_100139172	3300032012	Soil	MMMNRTAFPATPDEVAVLTPQEFTFDLDDLDGNLAPSMDLVCRTFIDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHCWEFEPAPFSSALEAVTVGRARAQTKA
Ga0310895_100235733	3300032122	Soil	MMMNRTAFPATADEVAALTPQEFTIDLDDLEGNQAPSMDRVCQTFMDDANRALVWWIRFGALKAWCARTDVMARLNSGSMALQDARDVAASFPLNHRWEFEPAPFSSALEAVTVGRARAQTKA
Ga0335079_104694072	3300032783	Soil	MTNPTAFPATPGEVAVLTTLEFTFDLDELDGNRVPSLERVCRTFMTDANRALVWWIRFRALKVWCTRSEVIARLNLGSVTLRGACSVAASFPLNQQWEFEPDDFCSAIEALNH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094303

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences