Metagenome / Metatranscriptome Family F094373

Basic Information
Family ID	F094373
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	46 residues
Representative Sequence	MTVPLTPTVIVLGPSAADSNACTGTTLPINLSHRECRPFQPWRLTQSR
Number of Associated Samples	102
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	1.89 %
% of genes from short scaffolds (< 2000 bps)	1.89 %
Associated GOLD sequencing projects	100
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Most Common Taxonomy
Group	Unclassified (98.113 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.868 % of family members)
Environment Ontology (ENVO)	Unclassified (22.642 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.057 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 10.53% β-sheet: 0.00% Coil/Unstructured: 89.47%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04986	Y2_Tnp	65.09
PF14319	Zn_Tnp_IS91	17.92
PF13495	Phage_int_SAM_4	6.60
PF00589	Phage_integrase	4.72

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
All Organisms	root	All Organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
cellular organisms	root	All Organisms → cellular organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	98.11 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.94 %

Scaffold	Taxonomy	Length	IMG/M Link
3300012209\|Ga0137379_10949447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	765	Open in IMG/M
3300031954\|Ga0306926_11262560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	864	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.96%
Host-Associated	Host-Associated	16.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.30%
Plants	Host-Associated → Plants	16.04%
Aquatic	Environmental → Aquatic	5.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.55%
Freshwater	Environmental → Aquatic → Freshwater	1.89%
Marine	Environmental → Aquatic → Marine	1.89%
Sediment	Environmental → Aquatic → Sediment	1.89%
Floodplain	Environmental → Terrestrial → Floodplain	0.94%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.87%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.60%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.77%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.49%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.77%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.89%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	10.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.89%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.94%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.94%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.94%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.94%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.94%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.94%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4	Host-Associated	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003997	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D1	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300025604	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027635	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031698	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-70	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034148	Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24738J21930_100149283	3300002075	Corn Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTA
JGI24738J21930_101005391	3300002075	Corn Rhizosphere	MTFPLTPTVIVLGLSPADSDACTGTALPIDLSDLECR
JGI25407J50210_100670452	3300003373	Tabebuia Heterophylla Rhizosphere	MTVPLAPPASVPGPSAAGSNACTSTALPINLLHHQCRLFP
Ga0055466_102676362	3300003997	Natural And Restored Wetlands	MTVPLTSTVIVPGPRTVGSNACNGTTLPINLSHRECRLFQPGRWTQSRRTALERRPQAQ
Ga0062384_1010273452	3300004082	Bog Forest Soil	MTVPLMSTVIVLGTSAADSNARTGPTLPIILSYRECRPFQPWRLTQSRHIAL
Ga0063356_1047729071	3300004463	Arabidopsis Thaliana Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHRECRPLQLCRSTQS
Ga0066395_107146162	3300004633	Tropical Forest Soil	MTSPLTPTVIVLGPSAADSNACTDTALPINPSNLQCRLFSPRD*
Ga0066812_10084502	3300005105	Soil	MTFPLTPTVIVLGLSPADSDACAGTARPINRSNLECRPFLP
Ga0066677_108411431	3300005171	Soil	MTVPLTPTVIVLGPSAADSNACTGTTLPINLSHRECRPFQPWRLTQSR
Ga0070687_1014545332	3300005343	Switchgrass Rhizosphere	MTVALTSTIIMLGPRAADSNACTGTALPIDLSHRQCHPFQLWRLTQS
Ga0070673_1004529452	3300005364	Switchgrass Rhizosphere	MTFPLTPTVIVLGLSPADSDACAGTARPINRSNLECRPFL
Ga0066681_105874492	3300005451	Soil	MTCPLTPTVIVLAPSAADSNARIGTALPINLSSLECRPFPPRR*
Ga0066681_105909632	3300005451	Soil	MTVPLTSTIIMLGPRADSNACTGTALPINLSHRECHPFQLWRLTQSC
Ga0070706_1001309801	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPLTSPIVMLGPRAADSNACTGTALPINLSHREYHPFQLWRLTQSWRTALEHRQC
Ga0070704_1014261201	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLT
Ga0066701_107592692	3300005552	Soil	MTFPLTPTVIVLSPSTADSNACTATALPINLSHREYQPFQLWRLTQSWRTALEHRQCARTNR
Ga0066661_105302642	3300005554	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHRE
Ga0068857_1017603591	3300005577	Corn Rhizosphere	MTVPLTPTVIVLGPSAADSNARTGTALPIDLSDRECRPFSPWRLTQSRRTPLERR
Ga0066706_106066321	3300005598	Soil	MTFPLTSTVIMLGPSAADAMPAPGTALPINLTNLE
Ga0082029_10925981	3300006169	Termite Nest	MTVPLTPTVIVLGPSAADSDARTGTALPINLSHRECRPLQSWD*
Ga0075422_100696192	3300006196	Populus Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPE
Ga0079222_106889572	3300006755	Agricultural Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQRTALGRRPDL
Ga0075421_1008398682	3300006845	Populus Rhizosphere	MTVPPTSTIIMLGPRAADSNACTGTALPINLSHREY
Ga0068865_1004219231	3300006881	Miscanthus Rhizosphere	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQP
Ga0111539_107149402	3300009094	Populus Rhizosphere	MTVPLTPTVIALSPSAADSYARTGTALPIYLSRRQSR
Ga0066709_1045473191	3300009137	Grasslands Soil	MTFPLTPTVIVLSPSTADSNACTATALPINLSHREYQPFQLW
Ga0126307_100802201	3300009789	Serpentine Soil	MTCPLTPTVIVLAPSAADSNACIGTALPINLSSLECRPFPPRR*
Ga0126315_103086893	3300010038	Serpentine Soil	MTVPLTSTVSLPSTSAADSNACTGTTLPSNLAHRE
Ga0134064_101921222	3300010325	Grasslands Soil	MTVLLTPTVIVLGPSAADSNACTGTTLPINLSHRECRPFQPWRLTQSRRTALER
Ga0134063_105022431	3300010335	Grasslands Soil	MTVPLTSTIIMLGPRADSNACTGTALPINLSHRECHP
Ga0126370_112282812	3300010358	Tropical Forest Soil	MTFSLTPTVIVFGPRAADSNACTATALPINLSHREYQPFQLWRLTQSWRTALEH
Ga0126372_101326463	3300010360	Tropical Forest Soil	MTVPLTPTVIVLGPSAADSDACTGTALLINLSHRECRPLQSCRLTQSRRAALER
Ga0126381_1006144241	3300010376	Tropical Forest Soil	MTFSLTPTVIVFGPRAADSNACTATALPINLSHREYQPFQLWRLTQS
Ga0134124_121155232	3300010397	Terrestrial Soil	MIIPLTSTVIVLDTSAADSNACIGIALAINLSHRRDRPF
Ga0126350_104788393	3300010880	Boreal Forest Soil	MTVPLSTVIGLDTSAADSNACTGRTLPIILSDRECGPFQPGRLTQ
Ga0105246_115654341	3300011119	Miscanthus Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQL
Ga0137376_110635401	3300012208	Vadose Zone Soil	MTFPLTPTVIVLGLSPADSDACTSIALPINLSNLECRPFLP
Ga0137379_109494471	3300012209	Vadose Zone Soil	MTVPLTSTIIMLSPRAADSNACTGTALPINLCHREYHPFQL
Ga0137377_107349491	3300012211	Vadose Zone Soil	MTVSLTSTMIRLGPSAADSNPCTGTALPINLSHRECRPFQTCR
Ga0137385_101957483	3300012359	Vadose Zone Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQ
Ga0157324_10168891	3300012506	Arabidopsis Rhizosphere	MTFPLTPTVIVLGLSFADSNACTATALLINLSDLECRPFLSR
Ga0157296_103973321	3300012905	Soil	MTVPLTPTVIVFGSSTADSNACTGTALPINLSHRECRPLQLCRSTQSRRTALDRRP
Ga0126375_110959482	3300012948	Tropical Forest Soil	MTVPLTPTVIVFGPSAADSDACTGTALLINLAHRECRPLQSCRLTQSRRAAL
Ga0173480_106364361	3300015200	Soil	MTVPLTPTVIVLGPSAADSNACTATALPINLSHRECRPLQLCRST
Ga0132255_1003336823	3300015374	Arabidopsis Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTALDRRPRA
Ga0182041_122373152	3300016294	Soil	MTLPLILTVIVLGLSPAHSDASTGTARPINRSNLQC
Ga0182033_100997683	3300016319	Soil	MTFPLTPTVIVLGLSPADNDDCTGTARPINRSNVE
Ga0182040_118844371	3300016387	Soil	MMFPLTLTVIVLGLSPTGSDACTGTPLPINFSNLGCRPFLPRTLT
Ga0184608_105216852	3300018028	Groundwater Sediment	MTFPLTPTVIVLGLSPADSDACTRTALPIDLSDLECRPF
Ga0184609_101119702	3300018076	Groundwater Sediment	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWR
Ga0190265_101659113	3300018422	Soil	MTVPLRSTAIVLGSSAADSNVCTGTTLPTKLSHRECRPFQRQRLT
Ga0066669_116710141	3300018482	Grasslands Soil	MTCPLTPTVIVLAPSAADSNARIGTALPINLSSLECRPFPPRR
Ga0193703_10638952	3300019876	Soil	MTILLTSTVVVLGPSAADNNACAGTMLPIKLFHRECHPLQP
Ga0193747_10249243	3300019885	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEH
Ga0210401_106360712	3300020583	Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLTHRECRPFQPWRLPQSR
Ga0210387_116338311	3300021405	Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLSHRECRPFQPWRLPQSRRTAVDPDPTRK
Ga0210386_116094162	3300021406	Soil	MTVPLTSTIILLGPRAADSNACTGTALPINLSHREYHPFQLWRLTQS
Ga0210410_101931453	3300021479	Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLSHRNAARSSP
Ga0207930_11386232	3300025604	Arctic Peat Soil	MTVPLTPTVIVLNLSAADSNACIGSALPIHLSHRECRPFQPWRLPQSRRTA
Ga0207692_108119811	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEQRQC
Ga0207657_111691912	3300025919	Corn Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTALDRRP
Ga0207651_108885041	3300025960	Switchgrass Rhizosphere	MTVPLTPTVIVLGPSAADSNACTATALPINLSHPECRPLQLCRSTQSRRTALDRRPRAQINRLP
Ga0207648_122897242	3300026089	Miscanthus Rhizosphere	MTFPLTPTVIVLGLSPADSDACAGTARPINRSNLECRPFLPRRL
Ga0209131_11058641	3300026320	Grasslands Soil	MTFPLTLTVIVLGLSPADSDASTGTARPINRSNLQCR
Ga0209266_10415741	3300026327	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHRECHPFQL
Ga0257151_10192822	3300026341	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHREYQPFQLWRLT
Ga0209421_10653302	3300027432	Forest Soil	MTAPLTPTVIVLDLSPADSNACTGTALPINLSHRECRPFPAL
Ga0209422_11358671	3300027629	Forest Soil	MTVPLTPTVIVLNLSAADSNACIGPALPIHLSLRECRPFQPWRL
Ga0209625_10040134	3300027635	Forest Soil	MTCPLTLTVIVLGPSAADSNVCTATALPINLSNLQRRPFPLWRLT
Ga0209446_10664321	3300027698	Bog Forest Soil	MTVPLMSTVIVLGTSAADSNARTGPTLPIILSYRE
Ga0209283_109952821	3300027875	Vadose Zone Soil	MTVPLTSTIIMLGPRAADSNACTGTALPINLSHRECHPFQLW
Ga0307303_101468172	3300028713	Soil	MTILLTSTVVVLGPSAADNNACAGTMLPIKLFHRECHPLQPWKLTQI
Ga0307315_100101713	3300028721	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSW
Ga0307320_100217613	3300028771	Soil	MTFPLTPTVIVLGLSPADSDACPGTALPINLSDLECRPFLP
Ga0307306_100207831	3300028782	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRT
Ga0307310_103516851	3300028824	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEQ
Ga0318534_107930851	3300031544	Soil	MTFPLTPTVIVLGLSPADSDACTVTPLPINFSNLGCRP
Ga0318528_104261962	3300031561	Soil	MTVPLTPTVIVLGLNAADRNSCTGTALPINLSHRECGPFQPASLTQSRRTLSSTDI
Ga0315537_12850792	3300031698	Salt Marsh Sediment	MTVLLMSTVIVLAPSVADSNACTGTALPINLFNRECRSFQSWRLTQSPC
Ga0310686_1125662321	3300031708	Soil	MTVPLRSTIIMLGPRAADSHACTGTALPINLSHREYLPF
Ga0306917_114565062	3300031719	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHRQYQPFQLWRLTQSWRTALE
Ga0318500_105145462	3300031724	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQ
Ga0307468_1005570701	3300031740	Hardwood Forest Soil	MTFPLTPNVIVLSLSPADSDACTGTARPINRSNLEC
Ga0318508_10076861	3300031780	Soil	MTFSLTPTVIVLGPRAADSNACTATALPINLSHREYQPFQLWRLTQSWRTALE
Ga0318523_100391521	3300031798	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQRTALGRR
Ga0318564_101492231	3300031831	Soil	MTFSLTPTVIVFGPRAADSNACTATALPINLSHREYQPF
Ga0318517_104299551	3300031835	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKL
Ga0310892_111839091	3300031858	Soil	MTVPLTSTIIMLGPRAADSNACTGTALPIDLSHRQCHPFQLWRLT
Ga0306919_112258522	3300031879	Soil	MTVPLTPTVIVLGLNAADRNACTGTALPINLSHRECGPFQPGSWTQSPR
Ga0310893_102632832	3300031892	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTAFQVKRT
Ga0318536_104969941	3300031893	Soil	MTVPLTPTVIVLGLNAADRNACTGTALPINLSHRECGPFQPGSWT
Ga0310912_101028041	3300031941	Soil	MTAPLTSTVIVLGTSAADSNACIGRTSPIILSDRECGP
Ga0306926_112625603	3300031954	Soil	MMFPLTLTVIVLGLSPTGSDACTGTARPINRSNLECRLFL
Ga0306926_121147281	3300031954	Soil	MTFPLTPTVIVLGLSPADSDACTGTPLPINFSNLGC
Ga0318530_102441441	3300031959	Soil	MTVLLTSTVVVLGPSAADNNACAGTVLPINLFHRECRPLQPWKLTQSQRTALGRRPRAQKNR
Ga0306922_105880061	3300032001	Soil	MTLPLTPTVIVLGLNAADRNSCTGTALPINLSHRECGPFQPASLTQSRR
Ga0306922_121816761	3300032001	Soil	MTIPLMLIVIVLSLSPVDSDARTGPARPINRSNLQCRPFLPRR
Ga0318569_105048271	3300032010	Soil	MTFPLTPTVIVLGLSPADSDACTGTPLPINFSNLGCRPFLL
Ga0318505_101295281	3300032060	Soil	MTFPLTPTVIVLGLSPADSDACTVTPLPINFSNLGCRPFLPRTLTQL
Ga0318510_105057301	3300032064	Soil	MTFPLTPTVIVLGLSPADSDACTGTPLPINFSNLGCRPFLLRT
Ga0318524_101022261	3300032067	Soil	MTFSLTPTVIVLGPRAADSNACTATALPINLSHREYQPFQLWRLTQSWRTHRQCARTNRL
Ga0307472_1013496002	3300032205	Hardwood Forest Soil	MTILLTSTVVVLGPSAADNNACAGTMLPIKLFHRECHPLQPWKLTQIAAHS
Ga0310914_106387252	3300033289	Soil	MTAPLTSTVIVLGTSAADSNACIGRTSPIILSDRECGPFQ
Ga0247830_104364031	3300033551	Soil	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLW
Ga0364927_0245092_1_198	3300034148	Sediment	MTVPLTSTIIMLGPRAADSNACTGTTLPINLSHREYQPFQLWRLTQSWRTALEQRQCARTNRLPLA
Ga0373958_0012307_1326_1460	3300034819	Rhizosphere Soil	MTVALTSTIIMLGPRAADSNACTGTALPIDLSHRQCHPFQLWRLT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094373

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign