Metagenome / Metatranscriptome Family F094468

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094468
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	75 residues
Representative Sequence	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDREHWRDHDRGFDVDAPAGGVVIRR
Number of Associated Samples	84
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.02 %
% of genes near scaffold ends (potentially truncated)	21.70 %
% of genes from short scaffolds (< 2000 bps)	70.75 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.491 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.151 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.396 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 39.47% β-sheet: 9.21% Coil/Unstructured: 51.32%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF04379	DUF525	35.85
PF01430	HSP33	25.47
PF10129	OpgC_C	7.55
PF00202	Aminotran_3	3.77
PF07750	GcrA	1.89
PF00185	OTCace	1.89
PF03401	TctC	0.94
PF01895	PhoU	0.94
PF00486	Trans_reg_C	0.94
PF02729	OTCace_N	0.94
PF00135	COesterase	0.94
PF00162	PGK	0.94
PF01523	PmbA_TldD	0.94
PF13472	Lipase_GDSL_2	0.94
PF00528	BPD_transp_1	0.94
PF00561	Abhydrolase_1	0.94
PF00226	DnaJ	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG2967	Uncharacterized conserved protein ApaG affecting Mg2+/Co2+ transport	Inorganic ion transport and metabolism [P]	35.85
COG1281	Redox-regulated molecular chaperone, HSP33 family	Posttranslational modification, protein turnover, chaperones [O]	25.47
COG5352	Uncharacterized conserved protein	Function unknown [S]	1.89
COG0126	3-phosphoglycerate kinase	Carbohydrate transport and metabolism [G]	0.94
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.94
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.49 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	56.60 %
Unclassified	root	N/A	41.51 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	53.77 %
Unclassified	root	N/A	41.51 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	44.34 %
Unclassified	root	N/A	41.51 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16.04 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	14.15 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	14.15 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.89 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.94 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	14.15 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.89 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.94 %
Paraburkholderia rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia rhizosphaerae	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.51 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	14.15 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1.89 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	0.94 %
Paraburkholderia rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia rhizosphaerae	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004152\|Ga0062386_100095624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2279	Open in IMG/M
3300004633\|Ga0066395_10008325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3737	Open in IMG/M
3300005332\|Ga0066388_100000760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16354	Open in IMG/M
3300005332\|Ga0066388_100149837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2910	Open in IMG/M
3300005332\|Ga0066388_100934851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1440	Open in IMG/M
3300005332\|Ga0066388_103966528	Not Available	755	Open in IMG/M
3300005363\|Ga0008090_10108605	Not Available	862	Open in IMG/M
3300005435\|Ga0070714_100273654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1566	Open in IMG/M
3300005436\|Ga0070713_100057721	All Organisms → cellular organisms → Bacteria → Proteobacteria	3234	Open in IMG/M
3300005436\|Ga0070713_100195263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1825	Open in IMG/M
3300005436\|Ga0070713_100419994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1252	Open in IMG/M
3300005518\|Ga0070699_101243221	Not Available	683	Open in IMG/M
3300005560\|Ga0066670_10110383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1555	Open in IMG/M
3300005568\|Ga0066703_10231126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1124	Open in IMG/M
3300005587\|Ga0066654_10380307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300005764\|Ga0066903_100097684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3947	Open in IMG/M
3300005764\|Ga0066903_100247262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2746	Open in IMG/M
3300006046\|Ga0066652_101308092	Not Available	683	Open in IMG/M
3300006050\|Ga0075028_100777681	Not Available	582	Open in IMG/M
3300006052\|Ga0075029_101298579	Not Available	511	Open in IMG/M
3300006057\|Ga0075026_100479618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	713	Open in IMG/M
3300006059\|Ga0075017_101029232	Not Available	642	Open in IMG/M
3300006086\|Ga0075019_10669394	Not Available	655	Open in IMG/M
3300006102\|Ga0075015_100016771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	3181	Open in IMG/M
3300006163\|Ga0070715_10310306	Not Available	847	Open in IMG/M
3300006163\|Ga0070715_10685206	Not Available	610	Open in IMG/M
3300006174\|Ga0075014_100615541	Not Available	623	Open in IMG/M
3300006175\|Ga0070712_100076829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2405	Open in IMG/M
3300006175\|Ga0070712_100487295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1032	Open in IMG/M
3300006175\|Ga0070712_101891126	Not Available	523	Open in IMG/M
3300006176\|Ga0070765_101847534	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300006797\|Ga0066659_11763499	Not Available	523	Open in IMG/M
3300006800\|Ga0066660_10418763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1111	Open in IMG/M
3300006806\|Ga0079220_10210936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1130	Open in IMG/M
3300006893\|Ga0073928_10338355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1118	Open in IMG/M
3300006893\|Ga0073928_10383185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1033	Open in IMG/M
3300006954\|Ga0079219_10067734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1619	Open in IMG/M
3300006954\|Ga0079219_10082982	Not Available	1512	Open in IMG/M
3300009137\|Ga0066709_102058524	Not Available	790	Open in IMG/M
3300010048\|Ga0126373_10253949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1732	Open in IMG/M
3300010358\|Ga0126370_10005860	All Organisms → cellular organisms → Bacteria → Proteobacteria	6213	Open in IMG/M
3300010358\|Ga0126370_10399667	Not Available	1129	Open in IMG/M
3300010376\|Ga0126381_100337162	Not Available	2079	Open in IMG/M
3300012019\|Ga0120139_1016838	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300012200\|Ga0137382_10402904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	964	Open in IMG/M
3300012206\|Ga0137380_10030992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4930	Open in IMG/M
3300012208\|Ga0137376_11247717	Not Available	633	Open in IMG/M
3300012209\|Ga0137379_10011389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	8457	Open in IMG/M
3300015371\|Ga0132258_10199845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4848	Open in IMG/M
3300017822\|Ga0187802_10000007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39053	Open in IMG/M
3300017927\|Ga0187824_10030079	Not Available	1632	Open in IMG/M
3300017927\|Ga0187824_10205362	Not Available	671	Open in IMG/M
3300017930\|Ga0187825_10156695	Not Available	807	Open in IMG/M
3300018060\|Ga0187765_10000153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	23941	Open in IMG/M
3300018433\|Ga0066667_11175132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300018468\|Ga0066662_12148421	Not Available	585	Open in IMG/M
3300019887\|Ga0193729_1201311	Not Available	678	Open in IMG/M
3300019888\|Ga0193751_1000473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	31646	Open in IMG/M
3300021088\|Ga0210404_10537739	Not Available	662	Open in IMG/M
3300021171\|Ga0210405_10427679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1042	Open in IMG/M
3300021405\|Ga0210387_10103630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2383	Open in IMG/M
3300021405\|Ga0210387_11019887	Not Available	724	Open in IMG/M
3300021420\|Ga0210394_10130407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2179	Open in IMG/M
3300021432\|Ga0210384_10034108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4729	Open in IMG/M
3300021478\|Ga0210402_10043787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3899	Open in IMG/M
3300021560\|Ga0126371_10024908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5553	Open in IMG/M
3300021560\|Ga0126371_12740021	Not Available	598	Open in IMG/M
3300022557\|Ga0212123_10157670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1741	Open in IMG/M
3300022557\|Ga0212123_10186524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1554	Open in IMG/M
3300025906\|Ga0207699_10272399	Not Available	1173	Open in IMG/M
3300025915\|Ga0207693_10006352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9794	Open in IMG/M
3300025928\|Ga0207700_10160813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1865	Open in IMG/M
3300025928\|Ga0207700_10387874	Not Available	1222	Open in IMG/M
3300025928\|Ga0207700_10718628	Not Available	892	Open in IMG/M
3300026550\|Ga0209474_10314453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300027050\|Ga0209325_1004410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1440	Open in IMG/M
3300027070\|Ga0208365_1000589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3467	Open in IMG/M
3300027070\|Ga0208365_1030704	Not Available	708	Open in IMG/M
3300027605\|Ga0209329_1001512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3428	Open in IMG/M
3300027684\|Ga0209626_1095308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia rhizosphaerae	769	Open in IMG/M
3300027775\|Ga0209177_10197059	Not Available	715	Open in IMG/M
3300027898\|Ga0209067_10225709	Not Available	1013	Open in IMG/M
3300027915\|Ga0209069_10567211	Not Available	649	Open in IMG/M
3300030945\|Ga0075373_11475543	Not Available	545	Open in IMG/M
3300031057\|Ga0170834_104006166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1834	Open in IMG/M
3300031231\|Ga0170824_101969039	Not Available	546	Open in IMG/M
3300031231\|Ga0170824_103673188	Not Available	882	Open in IMG/M
3300031231\|Ga0170824_112849898	Not Available	639	Open in IMG/M
3300031446\|Ga0170820_11696773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1168	Open in IMG/M
3300031446\|Ga0170820_12424493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1901	Open in IMG/M
3300031469\|Ga0170819_13262384	Not Available	610	Open in IMG/M
3300031543\|Ga0318516_10000157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	17432	Open in IMG/M
3300031561\|Ga0318528_10000187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17258	Open in IMG/M
3300031680\|Ga0318574_10373413	Not Available	832	Open in IMG/M
3300031724\|Ga0318500_10609984	Not Available	553	Open in IMG/M
3300031751\|Ga0318494_10547365	Not Available	676	Open in IMG/M
3300031753\|Ga0307477_10440930	Not Available	889	Open in IMG/M
3300031754\|Ga0307475_10045352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3278	Open in IMG/M
3300031782\|Ga0318552_10004289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5468	Open in IMG/M
3300031820\|Ga0307473_10083333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1647	Open in IMG/M
3300031823\|Ga0307478_10665483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	872	Open in IMG/M
3300032001\|Ga0306922_12032741	Not Available	559	Open in IMG/M
3300032066\|Ga0318514_10000933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9550	Open in IMG/M
3300032174\|Ga0307470_10654344	Not Available	794	Open in IMG/M
3300032261\|Ga0306920_103733860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	558	Open in IMG/M
3300032892\|Ga0335081_10127467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3701	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.08%
Aquatic	Environmental → Aquatic	16.98%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.08%
Sediment	Environmental → Aquatic → Sediment	8.49%
Freshwater	Environmental → Aquatic → Freshwater	4.72%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.77%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	53.77%
Loam	Environmental → Terrestrial → Soil → Loam	26.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	8.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.72%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.77%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.32%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.43%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	8.49%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.77%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.77%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.89%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.15%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.21%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	8.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.77%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.77%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.77%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.89%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.94%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.94%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012019	Permafrost microbial communities from Nunavut, Canada - A7_5cm_12M	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300030945	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062386_1000956241	3300004152	Bog Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDHGFDADAPAGDIVIHR*
Ga0066395_100083253	3300004633	Tropical Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRSDSEVIIRERERWRQHDRGFDLDTPAGDVVIHR*
Ga0066388_1000007609	3300005332	Tropical Forest Soil	MTKILIGMATAAFWFVLSHAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTIHR*
Ga0066388_1001498373	3300005332	Tropical Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEGIIREREHWRHRDRGFDVDAPAGDVVIHR*
Ga0066388_1009348512	3300005332	Tropical Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDAEVIIREREHWRHHDRGFDLGTPAGDVVIHR*
Ga0066388_1039665281	3300005332	Tropical Forest Soil	VTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEEFIREREHWRHHDRGFDLDTPAGDVVIHR*
Ga0008090_101086052	3300005363	Tropical Rainforest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIRERERWRQHDRGFDLDTPAGDVVIHR*
Ga0070714_1002736542	3300005435	Agricultural Soil	MTKFLIGVATAALWFALSHAANAERSCRQICNNGTCVSRCVSRPDSEVIVHERERPRHRFDIDTPTGDVEIRR*
Ga0070713_1000577215	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	AALWFVLSHAANAERICREVCDHGTCVSRCVHRPGADVIIRDREHWRDRDRGFDVDAPAGGVVIRR*
Ga0070713_1001952632	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERSCRQICNNGTCVSRCVSRPDSEVIVHERERPRHRGFDIDTPTGDVEIRR*
Ga0070713_1004199942	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLTAGAERRLTMTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVSRPDSDVIVRDREHWRHRDRGVDIDTPAGDVTIHR*
Ga0070699_1012432211	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLTAGAERRLTMTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVSRPDSDVIVRDREHWRHRDRGVDID
Ga0066670_101103832	3300005560	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGSCVSRCVHRPNADVIIRDREHWRDRDRGFDVDAPAGGDVIRR*
Ga0066703_102311262	3300005568	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRG*
Ga0066654_103803071	3300005587	Soil	MTKFLIGVATAALWFVLSHAANAERICREVCDHGTCVSRCVHHSGSDGIVHQREYDRDRGFDVDTPAGGVVIHR*
Ga0066903_1000976843	3300005764	Tropical Forest Soil	MTKILIGMATAAFWFVLSHAANAERICREVCDHGTCVSRFANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTIHR*
Ga0066903_1002472622	3300005764	Tropical Forest Soil	MTKFLIGVATAALWFALSYAANAERTCRQVCDNGTCVSRCVQRPDSGVVVRHREQPRRHERGFDVDTPAGDVEIR*
Ga0066652_1013080921	3300006046	Soil	MTKFLIGVATAALWFALSHAAKAELICREVCDHGTCVSRCLHRPGADVIIRDREHWRDRDHGFDVDAPAGGVVIRR*
Ga0075028_1007776811	3300006050	Watersheds	ALSHAANAERVCRQVCDSGTCISRCVQRSDSDVVVREREHWRHHDRGFDVDTPAGDVVIHR*
Ga0075029_1012985791	3300006052	Watersheds	GAERRLTMTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDHGFDADAPAGDIVIHR*
Ga0075026_1004796182	3300006057	Watersheds	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHHPDADVIIRDREHWRDHDRGFDVDAPAGGVVIRR*
Ga0075017_1010292322	3300006059	Watersheds	MTKFLIGVATAALWFALSHAANAEPICRQVCDNGTCVSSCVQRSDSDVIVREREHRRHHDRGIDVDTPEGDVVIHR*
Ga0075019_106693942	3300006086	Watersheds	MTKFLIGVATAALWFVLSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDQGFDAAAPAGDIVIHR*
Ga0075015_1000167714	3300006102	Watersheds	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDQGFDAAAPAGDIVIHR*
Ga0070715_103103061	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERSCRQICNNGTCVSRCVSRPDSEVIVHARERPRHRGFDIDTPTGDVEIRR*
Ga0070715_106852062	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	TAEADRAGAARRLTMTKFLIGVATAALWFVLSHAANAERICREVCDHGTCVSRCVHRPGADVIIRDREHWRDRDRGFDVDAPAGGVVIRR*
Ga0075014_1006155412	3300006174	Watersheds	IGVATAALWFALSHAANAERICRQVCDSGTCVSSCVQRSDSDVIVREREHRRHHDRGIDVDTPEGDVVIHR*
Ga0070712_1000768292	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGAATAALWFALSHAANAERICRQVCDNGTCVSRCIQRPDSEVIIRDREHPRHHDHFDADAPAGDVVIHR*
Ga0070712_1004872951	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDRGFDIDTPAGDVMIRR*
Ga0070712_1018911261	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVSRPDSDVIVRDREHWRHRDRGVDIDTPAGDVTIHR*
Ga0070765_1018475342	3300006176	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDRGFDIDAPAGGVVIRR*
Ga0066659_117634991	3300006797	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHGPDADVIIRDREHWRDRDRGFDIDAPAGGVVIRR*
Ga0066660_104187631	3300006800	Soil	AALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRG*
Ga0079220_102109362	3300006806	Agricultural Soil	MTKFLIGVATAALWFALSHAANAERSCRQICNNGTCVSRCVSRPDSEVVVHARERPWHRGFDIDTPTGDVEIRR*
Ga0073928_103383552	3300006893	Iron-Sulfur Acid Spring	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHHPDADVIVRDREHWRDHDRGFDVDAPAGGVVIRR*
Ga0073928_103831852	3300006893	Iron-Sulfur Acid Spring	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHHPEADVIIRDREHWRDHDRGFDVDAPAGGVVIRR*
Ga0079219_100677342	3300006954	Agricultural Soil	MTKFLIGVATAALWFALSHAANAERVCREVCDHGACVSRCLHGPNADVTVRDRAHWRHHDRGFDVDTPAGGVIIGR*
Ga0079219_100829822	3300006954	Agricultural Soil	MLTAGADRKLTMTKFLMGVATAALWFALSHAANAERICRQVCDNGTCVSRCVSRPDSDVIVRDREHWRHRDRGVDIDTPAGD
Ga0066709_1020585242	3300009137	Grasslands Soil	MTKFLIGVATAALWFALSHAANAERICREFCDHGTCVSRCVHRPDAHVIIRDREHWRDRDRGFDIDAPAGGVVIGR*
Ga0126373_102539493	3300010048	Tropical Forest Soil	MTKFLIGVATAALWFALSYAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTIHR*
Ga0126370_100058606	3300010358	Tropical Forest Soil	VTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIRERERWRQHDRGFDLDTPAGDVVIHR*
Ga0126370_103996671	3300010358	Tropical Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGPCVSRCVQRPDAEVIIREREHWRHHDRG
Ga0126381_1003371622	3300010376	Tropical Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCISRCVQRPDSEVIIRERERWRQHDRGFDLDTPAGDVVIHR*
Ga0120139_10168382	3300012019	Permafrost	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDREHWRDHDRGFDVDAPAGGVVIRR*
Ga0137382_104029042	3300012200	Vadose Zone Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIGR*
Ga0137380_100309924	3300012206	Vadose Zone Soil	MTKFLIGVATAALWFALSHAANAERICREFCDHGTCVSRCVHRPDADVIIRDREHWRDRDRGFDIDAPAGGVVIRR*
Ga0137376_112477172	3300012208	Vadose Zone Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRR*
Ga0137379_100113891	3300012209	Vadose Zone Soil	MTKFLIGVATAALWFALSHAANAERICREFCDHGTCVSRCVLRPDADVIIRDREHWRDRDRGFDIDAPAGGVVIRR*
Ga0132258_101998455	3300015371	Arabidopsis Rhizosphere	MTKFLIGVATAALWFALSYAANAERTCRQVCDNGTCVSRCVQRPDSGVVVRDRVEPRRHERGFDVDTPAGDVEIRR*
Ga0187802_1000000713	3300017822	Freshwater Sediment	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDHGFDADAPAGDIVIHR
Ga0187824_100300792	3300017927	Freshwater Sediment	MTKFLIGMATAALWFMLAHAANAERLCREVCDNGSCVSRCVSRPDSEVIVHEREQSRHHDRGLDVDTPAGDIEIHR
Ga0187824_102053621	3300017927	Freshwater Sediment	RGAERRLTMTKFLIGVATAALWFVLSHAANAERICRQVCDNGTCVSRCVQRPDSEVYIREREHWRHHDHGFDADAPAGDIVIHR
Ga0187825_101566952	3300017930	Freshwater Sediment	MTKFLIGVATAALWFVLSHAANAERICRQVCDNGTCVSRCVQRPDSEVYIREREHWRHHDHGFDADAPAGDIVIHR
Ga0187765_1000015318	3300018060	Tropical Peatland	MIKFLIGVATAALWFALSHAANAERICRDVCDNGNCVSRCVQRPDKDAIVREREQTPRHDRSFDVGSLAGDVTIRH
Ga0066667_111751322	3300018433	Grasslands Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGCVVIRG
Ga0066662_121484212	3300018468	Grasslands Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRG
Ga0193729_12013112	3300019887	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDREHWRDRDRGFDIDAPAAGVVIRR
Ga0193751_100047318	3300019888	Soil	VTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDREHWRDRDRGFDIDAPAGGVVIRR
Ga0210404_105377391	3300021088	Soil	MTKFLIGVATAALWFVLSHAANAERICREVCDHGICVSRCVHHPAADVIIRDREHWRDHDRGFDVDAPARAAS
Ga0210405_104276792	3300021171	Soil	MTKFLIGVATAALWFALSHAANAERACRQVCDSGTCISRCVQRSDSDVIVREREHWRHHDRGFDVDTPAGDVVIHR
Ga0210387_101036303	3300021405	Soil	MTKFLIGVATAALWFALSHAANAERVCRQVCDSGTCISRCVQRSDSDVIVREREHWRHHDRGFDVDTPAGDVVIHR
Ga0210387_110198872	3300021405	Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGNCASRCIQRPDSEVVIRDREHPRYHDHFDADAPAGDVVIHR
Ga0210394_101304073	3300021420	Soil	MTKFLIGVATAALWFALSHAANAERICRQVRDNGNCASRCIQRPDSEVVIRDREHPRYHDHFDADAPAGDVVIHR
Ga0210384_100341082	3300021432	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPEADVIIRDRGFDIDAPAGGVVIRR
Ga0210402_100437872	3300021478	Soil	MTKFLIGVATAALWFALSHAAKAERICREVCDHGTCVSRCVHRPNADVIVRNREHWRDRDRGFDVDAPAGGVVIRR
Ga0126371_100249083	3300021560	Tropical Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIRERERWRQHDRGFDLDTPAGDVVIHR
Ga0126371_127400212	3300021560	Tropical Forest Soil	YRGAQPRLTAGAERRLTMTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDAEVIIREREHWRHHDRGFDLGTPAGDVVIHR
Ga0212123_101576702	3300022557	Iron-Sulfur Acid Spring	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHHPDADVIVRDREHWRDHDRGFDVDAPAGGVVIRR
Ga0212123_101865242	3300022557	Iron-Sulfur Acid Spring	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHHPEADVIIRDREHWRDHDRGFDVDAPAGGVVIRR
Ga0207699_102723992	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERSCRQICNNGTCVSRCVSRPDSEVIVHERERPRHRFDIDTPTGDVEIRR
Ga0207693_1000635211	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPGADVIIRDREHWRDRDRGFDVDAPAGGVVIRR
Ga0207700_101608131	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AALWFVLSHAANAERICREVCDHGTCVSRCVHRPGADVIIRDREHWRDRDRGFDVDAPAGGVVIRR
Ga0207700_103878742	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTKFLIGVATAALWFALSHAANAERSCRQICNNGTCVSRCVSRPDSEVIVHERERPRHRGFDIDTPTGDVEIRR
Ga0207700_107186282	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	QLVPRAQPMLTAGAERRLTMTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVSRPDSDVIVRDREHWRHRDRGVDIDTPAGDVTIHR
Ga0209474_103144531	3300026550	Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGSCVSRCVHRPNADVIIRDREHWRDRDRGFDVDAPAGGDVIRR
Ga0209325_10044101	3300027050	Forest Soil	MLTAGAERRLTMTKFLIGVATAALWFELSHAANAERICRQVCDNGTCVSRCVSRPDSDVIVRDRERWRHRDRG
Ga0208365_10005894	3300027070	Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCASRCIQRPDSEVVIRDREHPRYHDHFDADAPAGDVVIHR
Ga0208365_10307041	3300027070	Forest Soil	LWFALSHAANAERVCRQVCDSGTCISRCVQRSDSDVVVREREHWRHHDRGFDVDTPAGDVVIHR
Ga0209329_10015124	3300027605	Forest Soil	MTKFLIGVATAALWFALSHAANAERVCRQVCDSGTCISRCVQRSDSDVVVREREHWRHHDRGFDVDTPAGDVVIHR
Ga0209626_10953083	3300027684	Forest Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRDRGFDIDAPAGGVVIRR
Ga0209177_101970592	3300027775	Agricultural Soil	MTKFLIGVATAALWFALSHAANAERVCREVCDHGACVSRCLHGPNADVTVRDRAHWRHHDRGFDVDTPAGGVIIGR
Ga0209067_102257091	3300027898	Watersheds	MTKFLIGVATAALWFVLSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDQGFDAAAPAGDIVIHR
Ga0209069_105672111	3300027915	Watersheds	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHHPDADAIIRDREHWRDRDRGFDVDAPAGASTSKPRSR
Ga0075373_114755432	3300030945	Soil	MTKFLIGVATAALWFVLSHAANAERICREVCDHGTCVSRCVHRPDAEVIIRDREHWRDRDHGFDIDAPAGGVVIGR
Ga0170834_1040061662	3300031057	Forest Soil	MTKFLIGVATAALWFVLSHAANAERICREVCDHGTCVSRCVHHPDADVIIRDREHWRDHDRGFDVDATAGGVVIRR
Ga0170824_1019690392	3300031231	Forest Soil	ATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRR
Ga0170824_1036731881	3300031231	Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSSCVQRSDSDVIVREREHRRHHDRGIDVDTPEGDVVIHR
Ga0170824_1128498981	3300031231	Forest Soil	ALWFALSHAANAERICREVCDHGTCVSRCVHRPDAEVIIRDREHWRDRDRGFDVDAPAGGVVIRR
Ga0170820_116967732	3300031446	Forest Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDAEVIIRDREHWRDRDRGFDVDAPAGGVVIRR
Ga0170820_124244932	3300031446	Forest Soil	MTKFLIGVATAALWFALSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRR
Ga0170819_132623841	3300031469	Forest Soil	MTKFLIGVATAALWFVLSHAANAERICREVCDHGTCVSRCVHRPDADVIIRGREHWRDRDRGFDIDAPAGGVVIRR
Ga0318516_100001573	3300031543	Soil	MTKILIGMATAAFWFVLSHAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTIHR
Ga0318528_1000018713	3300031561	Soil	MTKILIGMATGAFWFVLSHAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTIHR
Ga0318574_103734132	3300031680	Soil	FVLSPAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTIHR
Ga0318500_106099841	3300031724	Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIRERERWRQHDRGFDLDTPAGNVTIHR
Ga0318494_105473651	3300031751	Soil	MTKILIGMATAAFWFVLSHAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDV
Ga0307477_104409302	3300031753	Hardwood Forest Soil	MTKFLIGVATAALWFALSHAANAERVCQQVCDNGTCISRCVQRSDSDVVVREREHWRHHDRGFDVDTPAGDVVIHR
Ga0307475_100453521	3300031754	Hardwood Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCIQRPDSEVVIRDREHPRHHDHFDADAPAGDVVIHR
Ga0318552_100042896	3300031782	Soil	MTKILIGMATAAFWFVLSHAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRQHDSGMDVDTPTGDVTIHR
Ga0307473_100833333	3300031820	Hardwood Forest Soil	MTKFLIGVATAALWFALSHAANAERICRQVRDNGNCASRCIQRPDSEVVIRDREHPRYHDHFDADAPAGEVVIHR
Ga0307478_106654832	3300031823	Hardwood Forest Soil	MTKFLIGVATAALWFALSHAANAERVCRQVCDSGTCISRCVQRSDSDVVVREREHWRHHDRGFDVDTPAGDVLIHR
Ga0306922_120327411	3300032001	Soil	MTKFLIGVVTAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIRERERWRQHDRGFDLDTPAGNVTIHR
Ga0318514_1000093311	3300032066	Soil	MTKILIGMATAAFWFVLSHAANAERICREVCDHGTCVSRCANRPDADVTVRGREHWRHHDSGMDVDTPTGDVTI
Ga0307470_106543441	3300032174	Hardwood Forest Soil	RSWPQGAERRLTMTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCIQRPDSEVVIRDREHPRYHDHFDADAPAGEVVIHR
Ga0306920_1037338601	3300032261	Soil	MTKFLIGVATAALWFALSHAANAERICRQVCDNGTCVSRCVQRPDSEGIIREREHWRHRDRGFDV
Ga0335081_101274673	3300032892	Soil	MAKFLIGVATAALWFVLSHAANAERICRQVCDNGTCVSRCVQRPDSEVIIREREHWRHHDHGFDADAPAGDIVIHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094468

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences