Metagenome Family F094512

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094512
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	72 residues
Representative Sequence	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE
Number of Associated Samples	76
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.47 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	73.58 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.528 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (20.755 % of family members)
Environment Ontology (ENVO)	Unclassified (35.849 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.981 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 14.43% β-sheet: 0.00% Coil/Unstructured: 85.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00589	Phage_integrase	30.19
PF12599	DUF3768	4.72
PF00004	AAA	3.77
PF00106	adh_short	1.89
PF01569	PAP2	1.89
PF01243	Putative_PNPOx	1.89
PF12728	HTH_17	1.89
PF07167	PhaC_N	0.94
PF13561	adh_short_C2	0.94
PF00149	Metallophos	0.94
PF08281	Sigma70_r4_2	0.94
PF02613	Nitrate_red_del	0.94
PF07183	DUF1403	0.94
PF00648	Peptidase_C2	0.94
PF02665	Nitrate_red_gam	0.94
PF01526	DDE_Tnp_Tn3	0.94
PF13700	DUF4158	0.94
PF02146	SIR2	0.94
PF01841	Transglut_core	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2180	Nitrate reductase assembly protein NarJ, required for insertion of molybdenum cofactor	Posttranslational modification, protein turnover, chaperones [O]	0.94
COG2181	Nitrate reductase gamma subunit	Energy production and conversion [C]	0.94
COG3243	Poly-beta-hydroxybutyrate synthase	Lipid transport and metabolism [I]	0.94
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.47 %
Unclassified	root	N/A	24.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.53 %
Unclassified	root	N/A	24.53 %
Viruses	superkingdom	All Organisms → Viruses	0.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.53 %
Unclassified	root	N/A	24.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.98 %
Unclassified	root	N/A	24.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.09 %
Unclassified	root	N/A	24.53 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	48.11 %
Unclassified	root	N/A	24.53 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	39.62 %
Unclassified	root	N/A	24.53 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	39.62 %
Unclassified	root	N/A	24.53 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	38.68 %
Unclassified	root	N/A	24.53 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	37.74 %
Unclassified	root	N/A	24.53 %
Bradyrhizobium sp. LTSP857	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP857	0.94 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	0.94 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.94 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.94 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001546\|JGI12659J15293_10000138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22327	Open in IMG/M
3300001593\|JGI12635J15846_10091225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2205	Open in IMG/M
3300004080\|Ga0062385_10340733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	875	Open in IMG/M
3300004080\|Ga0062385_10445143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	786	Open in IMG/M
3300004082\|Ga0062384_101177925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	556	Open in IMG/M
3300004091\|Ga0062387_100878721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	676	Open in IMG/M
3300004092\|Ga0062389_102688137	Not Available	663	Open in IMG/M
3300004092\|Ga0062389_104122337	Not Available	546	Open in IMG/M
3300004152\|Ga0062386_100091817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	2327	Open in IMG/M
3300004152\|Ga0062386_100574427	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300006052\|Ga0075029_100238457	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300006059\|Ga0075017_100314874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1159	Open in IMG/M
3300009510\|Ga0116230_10661288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	786	Open in IMG/M
3300009520\|Ga0116214_1155209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	853	Open in IMG/M
3300009522\|Ga0116218_1498623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	543	Open in IMG/M
3300009618\|Ga0116127_1176205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	525	Open in IMG/M
3300009635\|Ga0116117_1034078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1262	Open in IMG/M
3300009639\|Ga0116122_1118985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	851	Open in IMG/M
3300009665\|Ga0116135_1498419	Not Available	505	Open in IMG/M
3300009683\|Ga0116224_10464913	Not Available	603	Open in IMG/M
3300009698\|Ga0116216_10156935	Not Available	1399	Open in IMG/M
3300009698\|Ga0116216_10275832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1026	Open in IMG/M
3300009700\|Ga0116217_10771223	Not Available	593	Open in IMG/M
3300010339\|Ga0074046_10222966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1179	Open in IMG/M
3300010339\|Ga0074046_10344378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	908	Open in IMG/M
3300010341\|Ga0074045_10202745	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300010343\|Ga0074044_10887256	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300010379\|Ga0136449_100105338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5761	Open in IMG/M
3300010379\|Ga0136449_100125026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5147	Open in IMG/M
3300010379\|Ga0136449_103328118	Not Available	617	Open in IMG/M
3300010379\|Ga0136449_104613632	Not Available	505	Open in IMG/M
3300014152\|Ga0181533_1042365	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300014153\|Ga0181527_1019193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4476	Open in IMG/M
3300014159\|Ga0181530_10435146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	662	Open in IMG/M
3300014495\|Ga0182015_10417081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	864	Open in IMG/M
3300014501\|Ga0182024_10006700	All Organisms → cellular organisms → Bacteria → Proteobacteria	25162	Open in IMG/M
3300014501\|Ga0182024_10024950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10588	Open in IMG/M
3300014501\|Ga0182024_10436136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1684	Open in IMG/M
3300014501\|Ga0182024_10770419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1177	Open in IMG/M
3300014638\|Ga0181536_10042143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3139	Open in IMG/M
3300017935\|Ga0187848_10066982	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1690	Open in IMG/M
3300017943\|Ga0187819_10698854	Not Available	572	Open in IMG/M
3300018002\|Ga0187868_1263356	Not Available	578	Open in IMG/M
3300018034\|Ga0187863_10503168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	678	Open in IMG/M
3300018035\|Ga0187875_10733160	Not Available	518	Open in IMG/M
3300018037\|Ga0187883_10208546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1002	Open in IMG/M
3300019786\|Ga0182025_1011766	Not Available	1429	Open in IMG/M
3300021407\|Ga0210383_11345955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	596	Open in IMG/M
3300027604\|Ga0208324_1005364	All Organisms → cellular organisms → Bacteria	4467	Open in IMG/M
3300027692\|Ga0209530_1024801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1804	Open in IMG/M
3300027696\|Ga0208696_1115639	Not Available	883	Open in IMG/M
3300027698\|Ga0209446_1011780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2144	Open in IMG/M
3300027701\|Ga0209447_10008575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2987	Open in IMG/M
3300027729\|Ga0209248_10008722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3198	Open in IMG/M
3300027767\|Ga0209655_10012134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2911	Open in IMG/M
3300027795\|Ga0209139_10007775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4035	Open in IMG/M
3300027795\|Ga0209139_10094107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1054	Open in IMG/M
3300027812\|Ga0209656_10020017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	4100	Open in IMG/M
3300027812\|Ga0209656_10138818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1231	Open in IMG/M
3300027824\|Ga0209040_10055903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2359	Open in IMG/M
3300027824\|Ga0209040_10260833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	864	Open in IMG/M
3300027824\|Ga0209040_10292990	Not Available	796	Open in IMG/M
3300027829\|Ga0209773_10017225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2815	Open in IMG/M
3300027895\|Ga0209624_10001663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17189	Open in IMG/M
3300027905\|Ga0209415_10127178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2662	Open in IMG/M
3300027908\|Ga0209006_10153106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2023	Open in IMG/M
3300028759\|Ga0302224_10370766	Not Available	580	Open in IMG/M
3300028780\|Ga0302225_10197388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	968	Open in IMG/M
3300029945\|Ga0311330_10598998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	867	Open in IMG/M
3300029951\|Ga0311371_10700361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1273	Open in IMG/M
3300029951\|Ga0311371_12137569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	587	Open in IMG/M
3300029952\|Ga0311346_11028608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	662	Open in IMG/M
3300029952\|Ga0311346_11337944	Not Available	547	Open in IMG/M
3300029954\|Ga0311331_10268082	All Organisms → cellular organisms → Bacteria	1855	Open in IMG/M
3300030043\|Ga0302306_10390991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	531	Open in IMG/M
3300030058\|Ga0302179_10270266	Not Available	749	Open in IMG/M
3300030399\|Ga0311353_11189202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	630	Open in IMG/M
3300030399\|Ga0311353_11550005	Not Available	536	Open in IMG/M
3300030494\|Ga0310037_10093135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1402	Open in IMG/M
3300030503\|Ga0311370_11298541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	779	Open in IMG/M
3300030503\|Ga0311370_11495986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	707	Open in IMG/M
3300030520\|Ga0311372_11185112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	981	Open in IMG/M
3300030520\|Ga0311372_11753107	Not Available	745	Open in IMG/M
3300030580\|Ga0311355_11677567	Not Available	543	Open in IMG/M
3300030580\|Ga0311355_11683729	Not Available	542	Open in IMG/M
3300030618\|Ga0311354_10112195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	3029	Open in IMG/M
3300030618\|Ga0311354_10948859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	798	Open in IMG/M
3300030618\|Ga0311354_11736979	Not Available	544	Open in IMG/M
3300030906\|Ga0302314_11690648	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	560	Open in IMG/M
3300031234\|Ga0302325_10952057	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300031236\|Ga0302324_101521719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	868	Open in IMG/M
3300031525\|Ga0302326_11665802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	844	Open in IMG/M
3300031525\|Ga0302326_13471015	Not Available	525	Open in IMG/M
3300031708\|Ga0310686_101908323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	1380	Open in IMG/M
3300031708\|Ga0310686_104496597	Not Available	646	Open in IMG/M
3300031708\|Ga0310686_116587451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	836	Open in IMG/M
3300032160\|Ga0311301_10089483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6177	Open in IMG/M
3300032160\|Ga0311301_10112952	All Organisms → cellular organisms → Bacteria → Proteobacteria	5192	Open in IMG/M
3300032160\|Ga0311301_10237775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	3031	Open in IMG/M
3300032160\|Ga0311301_11215229	Not Available	964	Open in IMG/M
3300032515\|Ga0348332_12369840	Not Available	543	Open in IMG/M
3300033402\|Ga0326728_10064644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. LTSP857	4990	Open in IMG/M
3300033402\|Ga0326728_10150185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2530	Open in IMG/M
3300033755\|Ga0371489_0109031	All Organisms → Viruses → Predicted Viral	1595	Open in IMG/M
3300033983\|Ga0371488_0142661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1265	Open in IMG/M
3300034091\|Ga0326724_0418858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	705	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.06%
Host-Associated	Host-Associated	0.94%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.09%
Aquatic	Environmental → Aquatic	33.96%
Plants	Host-Associated → Plants	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	34.91%
Freshwater	Environmental → Aquatic → Freshwater	32.08%
Peat	Environmental → Terrestrial → Peat	29.25%
Sediment	Environmental → Aquatic → Sediment	1.89%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.94%
Peat Moss	Host-Associated → Plants → Peat Moss	0.94%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	32.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	29.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	20.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.43%
Loam	Environmental → Terrestrial → Soil → Loam	4.72%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.89%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	29.25%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	27.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.81%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.89%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	20.75%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	18.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	16.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.72%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	4.72%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.72%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	4.72%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.77%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.77%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.77%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.77%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.89%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.94%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.94%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.94%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300009510	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fd - Sphagnum fallax MG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009618	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300018002	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029954	I_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030043	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034091	Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12659J15293_1000013825	3300001546	Forest Soil	MELTMTEFTFQATLLASIRVMADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED*
JGI12635J15846_100912251	3300001593	Forest Soil	MADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED*
Ga0062385_103407332	3300004080	Bog Forest Soil	MTEFTFQATLLASIRVKAKTQAEAELKLRTALEGSDANLGMLDDAPIVVPVEIEGDLDLIDTIESASEE*
Ga0062385_104451431	3300004080	Bog Forest Soil	MREFTLQATLIATIRVTAETRAEAERKLRAALEASDANLGMLDDEPIVVPVEIEGDLDLIETREDTGEEP*
Ga0062384_1011779251	3300004082	Bog Forest Soil	MEFLFQVTLLASIRVKAETQAEAEQKLRAALEASEANLGMLDDRPIVRPVEIEGDLDLIEALENAGEE*
Ga0062387_1008787211	3300004091	Bog Forest Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0062389_1026881371	3300004092	Bog Forest Soil	MTEFTFQATLLASIRVMADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED*
Ga0062389_1041223372	3300004092	Bog Forest Soil	EFTFQATLLASIRVKAKTQAEAELKLRTALEGSDANLGMLDDAPIVVPVEIEGDLDLIDTIESASEE*
Ga0062386_1000918171	3300004152	Bog Forest Soil	MKEFTFQATLLASIRVKAKTRAEAELKLRTALEGSDANLGMLDDAPIVVPVEIEGDLDLIDTIESTSEE*
Ga0062386_1005744272	3300004152	Bog Forest Soil	MMEFMFHVITRVDPRQAETHAEAEQLSAALEGSEANLGMLGDTPIVVPVEIEGDLDLIEAIENAGEE*
Ga0075029_1002384572	3300006052	Watersheds	MREFLFQVTLLASIRVKAETQGEAELKLGAALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0075017_1003148741	3300006059	Watersheds	MTEFTFQVTLLASIRVKAETQGEAELKLGAALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0116230_106612881	3300009510	Host-Associated	MREFALQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETREGTGEEPSASRATGCFARGICRSW*
Ga0116214_11552092	3300009520	Peatlands Soil	MSEFMFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEATENTGEE*
Ga0116218_14986231	3300009522	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE*
Ga0116127_11762052	3300009618	Peatland	MREFTFQATLLASIRVKAETRAEAEEKLRMALAVSDANLGMLDDALIVVPVEIEGDL
Ga0116117_10340782	3300009635	Peatland	MREFTLQATLIATIRVKAETRAEADQKLHSVLAASDANLGMLDDEPIVVPVEVEGDLDLIETCEDTGEEPLRKWSK*
Ga0116122_11189853	3300009639	Peatland	MREFTFQATLIASIRVKAETRAEAEQKLRVALAASDANLGMLDGAPIVVPVEIEGDLDLIETMESTGEEWRL*
Ga0116135_14984191	3300009665	Peatland	MCNKSTLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETREGTGEEPSASRATGCFARGICRSR*
Ga0116224_104649131	3300009683	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0116216_101569351	3300009698	Peatlands Soil	KGPAMMEFLFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEATENTGEE*
Ga0116216_102758322	3300009698	Peatlands Soil	MMEFLFQVTLLASIRVNAETQAEAELKLRGALEASEANLGMLDDTPIVVPVEIEGDLDLLEAMENTGEE*
Ga0116217_107712232	3300009700	Peatlands Soil	MMEFLFQVTLLASIPVKAETQGEAELKLRSALEASAANLGMLDDTPIVVPVAIEGDLDLIEALENTGEE*
Ga0074046_102229663	3300010339	Bog Forest Soil	MMREFLFHATLLVSIRVKAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGDLDLVETI*
Ga0074046_103443781	3300010339	Bog Forest Soil	MMREFLFHATLLASIRVKAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGD
Ga0074045_102027453	3300010341	Bog Forest Soil	MEFLIQVTLLASIPVKAETQAEAELKLRSALEASEANLGMLDDTPIVVPVEIEGDLDLIEALENTGEE*
Ga0074044_108872562	3300010343	Bog Forest Soil	VDASNVEDRFARKEPAMMEFLFHVTLLASIRVKAETQAEAELKLRTALEASEANLGMLDDTPIVVPVEIEGDLDLIEAIENAGEE*
Ga0136449_1001053385	3300010379	Peatlands Soil	MTEFTFQATLLASIRVKAETQAEAEQKLRAALEASEANLGTLDDAPIVVPVEIEGDLDLIE*
Ga0136449_1001250262	3300010379	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDRPIVVPVEIEGDLDLIEALENTGEE*
Ga0136449_1033281181	3300010379	Peatlands Soil	MKEYVFQATLIASIGVKAETRAEADLKLRAALAASEANLGMLDNEPIVCTVEVEGDLDLIEICERSGDE*
Ga0136449_1046136321	3300010379	Peatlands Soil	MKEFTFQATLLASIRVKAETRAEAEQKLRAALMASKANLEMLDATPIVVPVEIEGDLDLIETIESAGEE*
Ga0181533_10423653	3300014152	Bog	EPVMREFTFQATLLASIRVTAETRAEAEQKLRVALAASDASLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL*
Ga0181527_10191932	3300014153	Bog	MREFTFQATLLASIRVTAETRAEAEQKLRVALAASDASLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL*
Ga0181530_104351461	3300014159	Bog	MREFTFQATLLASIRVKAETRAEAEQKLRVALAASDANLGMLDDAPVVVPVEIEGDLDLTETMESAGEEWRS*
Ga0182015_104170812	3300014495	Palsa	MPEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAARDASLGTLDDEPIVVPVEVEGDLDLIETCEDTSAGPLSK*
Ga0182024_1000670018	3300014501	Permafrost	MERPTPPCPSVETQRESIMKEFTFQATLIASICVEAETQAEAEQKLRVALAASDANLGMLDDAPLVVSVEIEGDLDLIEIMESSGR*
Ga0182024_100249508	3300014501	Permafrost	MTEFTFQATLLASIRVRAETQAEAERKLRAALEAADATLGRLDGSPIVVPVEIEGDLDLIETAEYPREK*
Ga0182024_104361362	3300014501	Permafrost	MREFTLQATLIATIRVKAETRAEAEQKLHSVLAARDASLGTLDDEPIVVPVEVEGELDLIETSEETGEKPVSRATDCSARRMCRSR*
Ga0182024_107704191	3300014501	Permafrost	MKEFTLQATLIATIRVKAETRAEAELKLRGALEASDANLGTLDDEPIVVPVEIEGDFDLIETTEDPGEEPLRN*
Ga0181536_100421436	3300014638	Bog	MREFTFQATLLASIRVKAETRAEAEQKLRVALAASDANLGMLDDAPVVVPVEIEGDLDLIETMESTGEEWRL*
Ga0187848_100669823	3300017935	Peatland	MREFTFQATLLASIRVTAETRAEAEQKLRVALAASDASLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL
Ga0187819_106988542	3300017943	Freshwater Sediment	MMEFLFQVTLLASIRVKAEMQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEAMDNTGEE
Ga0187868_12633561	3300018002	Peatland	MREFTFQATLIASIRVKAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETVESAGEEWRL
Ga0187863_105031681	3300018034	Peatland	MPEGNQVMREFTLQATLIATIRVKAETEAEAELKLRAALDASEANLGMLDDTPIVVPVEIEGDLDLIEAMENTGEGIVTSSK
Ga0187875_107331601	3300018035	Peatland	MMEFLFQVTLLASIRVKAETQAEAELKLRAALESSEANLGMLDETPIVVPVEIEGDLDLIEAMENTGED
Ga0187883_102085462	3300018037	Peatland	MREFLFQVTLLASIRVKAETEAEAELKLRAALDASEANLGMLDDTPIVVPVEIEGDLDLIEAMENTGEGIVTSSK
Ga0182025_10117662	3300019786	Permafrost	MKEFTFQATLIASICVEAETQAEAEQKLRVALAASDANLGMLDDAPLVVSVEIEGDLDLIEIMESSGR
Ga0210383_113459551	3300021407	Soil	MTEFTFQVTLLGSIRVKAKTQAEAELKLRTALEESDANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE
Ga0208324_10053643	3300027604	Peatlands Soil	MFQVTLLASIRVKAETQAEAELKLRAALEASEANLGTLDDAPIVVPVEIEGDLDLIE
Ga0209530_10248012	3300027692	Forest Soil	MADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED
Ga0208696_11156392	3300027696	Peatlands Soil	MSEFMFQVTLLASIRVKAETQAEAELKLRAALEASEANLGMLDDTPIVVPVEIEGDLDLIEATENTGEE
Ga0209446_10117801	3300027698	Bog Forest Soil	GTLRSASKTLIERPRAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGKEPLRK
Ga0209447_100085754	3300027701	Bog Forest Soil	LIERPRAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEEPLRK
Ga0209248_100087221	3300027729	Bog Forest Soil	LIERPRAMCNKSMLEGNQVMREFTLQATLIATICVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCKDTGEEPLRK
Ga0209655_100121343	3300027767	Bog Forest Soil	MCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEEPLRK
Ga0209139_100077754	3300027795	Bog Forest Soil	MCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDAGKEPLRK
Ga0209139_100941072	3300027795	Bog Forest Soil	MIEFTLQATLIATIRVTAETRAEAERKLRAALEASDANLGMLDDEPIVVPVEIEGDLDLIETREDTGEEP
Ga0209656_100200173	3300027812	Bog Forest Soil	MMEFTFQATLLASIRVKADTEAEAEQKLRAALMASEANLGMLDDTPIVVPVEIEGELDLSETIESTGEK
Ga0209656_101388182	3300027812	Bog Forest Soil	MMEFTFQATLLASIRVKADTEAEAEQKLRAALMASEANLGMLDDTPIVVPVEIEGDLDLSETIESTVEE
Ga0209040_100559032	3300027824	Bog Forest Soil	MREFLFQATLLASIRVRAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGDLDLVGTI
Ga0209040_102608333	3300027824	Bog Forest Soil	MMREFLFQATLLASIRVKAETQAEAELKLREALSASDANLGMLDDAPIVVPVEIEGDLDLVETI
Ga0209040_102929902	3300027824	Bog Forest Soil	MMREFLFHATLLASIRVKAETQAEAELKLREALSASDANLGMLDDAPIIVPVEIEGDLDLVEII
Ga0209773_100172253	3300027829	Bog Forest Soil	MCNNSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEGPLRK
Ga0209624_100016632	3300027895	Forest Soil	MTEFTFQATLLASIRVMADTQAEAELKVRAALEASDANLGMLDGAPIVVPVEIEGELDLIETIENTSED
Ga0209415_101271784	3300027905	Peatlands Soil	MKEYVFQATLIASIGVKAETRAEADLKLRAALAASEANLGMLDNEPIVCTVEVEGDLDLIEICERSGDE
Ga0209006_101531061	3300027908	Forest Soil	MRRSGTLRSASKTLIERPRAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGELDLIETCEDTGEEPLRK
Ga0302224_103707661	3300028759	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDDAPIVVTIEIEGDLDLIDAVESGCVQWPPPAPPLHS
Ga0302225_101973882	3300028780	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGDLDLIDAVEGACG
Ga0311330_105989982	3300029945	Bog	MREFTLQATLIATIRVKAETRAKAEQKLHAALAASDANLGTLDDEPIVVPVEVEGDLDLIETCEDTSAGP
Ga0311371_107003611	3300029951	Palsa	MSMYRFQVTLLASIAVEANASVEAERKLREALSASDANLGMLNDEPIVATLEIEGELDLI
Ga0311371_121375691	3300029951	Palsa	VTEFTFQVTLIASIHVKAETRADAEHKLREALAASDVNLGMLDDEPIVVAIEIEGDLDLIDAVQSAGGDPLRVLSL
Ga0311346_110286081	3300029952	Bog	MKEFTLQATLIATIRVKAETRAEAEQKLRAALEASDANLGMLDGEPIVVPVEIEGDLDLIETSE
Ga0311346_113379441	3300029952	Bog	SISVNAETSDEADSKLRTALATSDARLGILDGEPIVVPVEIEGDLDLI
Ga0311331_102680822	3300029954	Bog	MREFTLQATLIATIRVKAETRAKAEQKLHAALAASDANLGTLDDEPIVVPVEVEGDLDLIETCEDTSAGPLSK
Ga0302306_103909912	3300030043	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGD
Ga0302179_102702661	3300030058	Palsa	NSVSVLSTEPNMMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGDLDLIDAVEGACG
Ga0311353_111892022	3300030399	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDDAPIVVTIEIEGDLDLIDAVESACVQWPPPAPPLHS
Ga0311353_115500051	3300030399	Palsa	MREFAFQVTLIATIRVKAETRAEAERKLHAALAASDANLGMLDDEPIVVPVEVEGDLDLIETCEDTGEEPLRK
Ga0310037_100931352	3300030494	Peatlands Soil	MMEFLFQVTLLASIRVNAETQAEAELKLRGALEASEANLGMLDDTPIVVPVEIEGDLDLLEAMENTGEE
Ga0311370_112985412	3300030503	Palsa	MTEFTFQVTLVASIRVKAVTTADAEHKLREALARSDANLGMLDDQPIVVTIEIEGDLDLIDAVEGAYG
Ga0311370_114959861	3300030503	Palsa	MTEFTFQVTLIASIRVRAETTADAEHKLREALAASHANLGMLDDQPIVVTIEIEGDLDLI
Ga0311372_111851122	3300030520	Palsa	MKEYTLQATLLASIRVKAKTSAEAEQKLRAALAVSDANLGMLDDAPIVVPVEIEGDLDLIETKEAPGATSTAN
Ga0311372_117531072	3300030520	Palsa	MCNKSILEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETCEDTGEEPLRK
Ga0311355_116775671	3300030580	Palsa	VRAETTADAEHKLREALAASHANLGMLDDKPIVVTAEIEGDLDLIDAVEGACGEPLRVLSLKVQTHSQPERHTCG
Ga0311355_116837291	3300030580	Palsa	QVMKEFTLQATLIATIRVKAETRAEAEQRLRAALEASSDANLGMLDDEPIVVPVEIEGDFDLIETTEDPGEEPLRN
Ga0311354_101121952	3300030618	Palsa	MMEFTFQVTLIASIRVKAKTRAQAEHKLREALAASDANLGMLDEKPIVVTVEIEGDLDMIDAVEGACG
Ga0311354_109488592	3300030618	Palsa	MKEFTLQATLIATIRVKAETRAEAELKLRGALEASDANLGTLDDEPIVVPVEIEGDLDLIETREDTGEEPRDN
Ga0311354_117369791	3300030618	Palsa	FSREPNMTEFTFQVTLIASIHVKAETRADAEHKLREALAASDANLGMLDDEPIVVAIEIEGDLDLIDAVQSAGGEPLRVLSL
Ga0302314_116906481	3300030906	Palsa	MKEYTLQATLLASIRVKAKTSAEAEQKLRTALAVSDANLGMLDDAPIVVPVEIEGDLDLIETKEAPGATSTAN
Ga0302325_109520572	3300031234	Palsa	VTEFTFQVTLIASIHVKAETRADAEHKLREALAASDANLGMLDDEPIVVAIEIEGDLDLIDAVQSAGGEPLRVLSL
Ga0302324_1015217192	3300031236	Palsa	MREFTLQATLIATIRVEAETRAEAERKVRAALAASDANLGTLDDEPIVVPVEIEGDLDLIETSGSPGEQPLGK
Ga0302326_116658022	3300031525	Palsa	MSIKSMLEGKQVMKEFTLQATLIATIRVKAETRAEAEQRLRAALEASSDANLGMLDDEPIVVPVEIEGDFDLIETTEDPGEEPLRN
Ga0302326_134710152	3300031525	Palsa	MMEFLFQVTLLASIRVKAETQAEAELKLRAALEGPEANLGVLDDMPIVAPVEIEGDLDLIEAMENAGEE
Ga0310686_1019083233	3300031708	Soil	MCNKSMLEGNQVMREFTLQATLIATICVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGESDLIETCEDTGEEPLRK
Ga0310686_1044965972	3300031708	Soil	ERPHAMCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGMLDDEPIVVPVEIEGELDLIETCEDTGEEPLPE
Ga0310686_1165874511	3300031708	Soil	MREFTLQATLIATIRVKAETRAEAEQKLRAALEASDANLGTFDDEPIVVPVEIEGDLDLIETREDTGEDSLRK
Ga0311301_100894834	3300032160	Peatlands Soil	MTEFTFQATLLASIRVKAKTQAEAELKLRTALEGADANLGMLDDAPIVVPVEIEGDLDLIDTIESASEE
Ga0311301_101129527	3300032160	Peatlands Soil	MMEFLFQVTLLASIRVKAETQAEAELKLRSALEASEANLGMLDDRPIVVPVEIEGDLDLIEALENTGEE
Ga0311301_102377754	3300032160	Peatlands Soil	MTEFTFQATLLASIRVKAETQAEAEQKLRAALEASEANLGTLDDAPIVVPVEIEGDLDLI
Ga0311301_112152292	3300032160	Peatlands Soil	KRPAMMEFLFQVTLLASIPVKAETQAEAELKLRSALEASEANLGMLDDAPIVVPVEIEGDLDLIEAMENTGEE
Ga0348332_123698401	3300032515	Plant Litter	MCNKSMLEGNQVMREFTLQATLIATIRVKAETRAEAEQKLHSVLAASDANLGTLDDEPIVVPVEVEGDLDLIETCENTGEEPLRK
Ga0326728_100646445	3300033402	Peat Soil	MTEFTFQATLLASIRVQVETRAEAEQKLRVALAVSDANLGMLDDAPIVVPVEIEGDLDLIETMESAGEESPRG
Ga0326728_101501852	3300033402	Peat Soil	MTEFTFQATLLASIRVTAETRAEAEQKLRVALAASDANLGMLDDAPVVVPVEIEGDLDLIETVESAGEEWRL
Ga0371489_0109031_1411_1593	3300033755	Peat Soil	SIRVNAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETMESAGEEWRL
Ga0371488_0142661_539_757	3300033983	Peat Soil	MREFTFQATLLASIRVNAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETMESAGEEWRL
Ga0326724_0418858_1_198	3300034091	Peat Soil	MREFTFQATLLASIRVNAETRAEAEQKLRVALAASDANLGMLDDAPIVVPVEIEGDLDLIETMESA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094512

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences