Metagenome Family F094549

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094549
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	67 residues
Representative Sequence	MVETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR
Number of Associated Samples	47
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	15.09 %
% of genes near scaffold ends (potentially truncated)	39.62 %
% of genes from short scaffolds (< 2000 bps)	96.23 %
Associated GOLD sequencing projects	46
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.151 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere (24.528 % of family members)
Environment Ontology (ENVO)	Unclassified (41.509 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.321 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.54% β-sheet: 0.00% Coil/Unstructured: 49.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07750	GcrA	11.32
PF01656	CbiA	2.83
PF08546	ApbA_C	1.89
PF03401	TctC	0.94
PF02803	Thiolase_C	0.94
PF03162	Y_phosphatase2	0.94
PF13546	DDE_5	0.94
PF13437	HlyD_3	0.94
PF04191	PEMT	0.94
PF05598	DUF772	0.94
PF01475	FUR	0.94
PF13751	DDE_Tnp_1_6	0.94
PF01051	Rep_3	0.94
PF13700	DUF4158	0.94
PF04796	RepA_C	0.94
PF00690	Cation_ATPase_N	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG5352	Uncharacterized conserved protein	Function unknown [S]	11.32
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	1.89
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.94
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.94
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	0.94
COG2365	Protein tyrosine/serine phosphatase Oca4	Signal transduction mechanisms [T]	0.94
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.94
COG5527	Protein involved in initiation of plasmid replication	Mobilome: prophages, transposons [X]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
All Organisms	root	All Organisms	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
cellular organisms	root	All Organisms → cellular organisms	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	18.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	15.09 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16.04 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	15.09 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	15.09 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9.43 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.09 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.77 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	3.77 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.94 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.09 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.77 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	1.89 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.94 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.94 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.09 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.77 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	1.89 %
Roseomonas arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas arctica	0.94 %
Paraburkholderia aspalathi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	0.94 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.15 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	15.09 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	3.77 %
Skermanella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	1.89 %
Azospirillum sp. B506	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B506	0.94 %
Roseomonas arctica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas arctica	0.94 %
Paraburkholderia aspalathi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	0.94 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001431\|F14TB_106398340	Not Available	578	Open in IMG/M
3300002568\|C688J35102_118041285	Not Available	525	Open in IMG/M
3300002568\|C688J35102_119644059	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
3300002568\|C688J35102_119821208	Not Available	784	Open in IMG/M
3300004153\|Ga0063455_100541301	Not Available	739	Open in IMG/M
3300004153\|Ga0063455_101571091	Not Available	517	Open in IMG/M
3300004463\|Ga0063356_104905422	Not Available	575	Open in IMG/M
3300005539\|Ga0068853_102434440	Not Available	507	Open in IMG/M
3300005615\|Ga0070702_100493183	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	898	Open in IMG/M
3300005719\|Ga0068861_101756790	Not Available	614	Open in IMG/M
3300005844\|Ga0068862_102201502	Not Available	563	Open in IMG/M
3300006755\|Ga0079222_10178361	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1248	Open in IMG/M
3300006846\|Ga0075430_100028942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4703	Open in IMG/M
3300006847\|Ga0075431_102074884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	523	Open in IMG/M
3300006853\|Ga0075420_100431248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1139	Open in IMG/M
3300006876\|Ga0079217_10828437	Not Available	647	Open in IMG/M
3300006918\|Ga0079216_11234658	Not Available	604	Open in IMG/M
3300006918\|Ga0079216_11715314	Not Available	536	Open in IMG/M
3300009094\|Ga0111539_10615270	Not Available	1265	Open in IMG/M
3300009094\|Ga0111539_10805127	Not Available	1093	Open in IMG/M
3300009094\|Ga0111539_12745794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	571	Open in IMG/M
3300009094\|Ga0111539_13508930	Not Available	503	Open in IMG/M
3300009101\|Ga0105247_11615013	Not Available	533	Open in IMG/M
3300009147\|Ga0114129_12216136	Not Available	661	Open in IMG/M
3300009156\|Ga0111538_11259514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia aspalathi	934	Open in IMG/M
3300009156\|Ga0111538_12409633	Not Available	660	Open in IMG/M
3300009156\|Ga0111538_12727792	Not Available	619	Open in IMG/M
3300009156\|Ga0111538_13894991	Not Available	516	Open in IMG/M
3300012212\|Ga0150985_100581001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1055	Open in IMG/M
3300012212\|Ga0150985_102105955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	699	Open in IMG/M
3300012212\|Ga0150985_102706458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1330	Open in IMG/M
3300012212\|Ga0150985_103044711	Not Available	789	Open in IMG/M
3300012212\|Ga0150985_103898514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1759	Open in IMG/M
3300012212\|Ga0150985_104092533	Not Available	806	Open in IMG/M
3300012212\|Ga0150985_106225078	Not Available	607	Open in IMG/M
3300012212\|Ga0150985_106858287	Not Available	959	Open in IMG/M
3300012212\|Ga0150985_107108754	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300012212\|Ga0150985_110607748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas arctica	1429	Open in IMG/M
3300012212\|Ga0150985_110937870	Not Available	518	Open in IMG/M
3300012212\|Ga0150985_110956372	Not Available	1120	Open in IMG/M
3300012212\|Ga0150985_112649367	Not Available	531	Open in IMG/M
3300012212\|Ga0150985_113400856	Not Available	688	Open in IMG/M
3300012212\|Ga0150985_113915262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2638	Open in IMG/M
3300012212\|Ga0150985_114501575	Not Available	639	Open in IMG/M
3300012212\|Ga0150985_114657565	Not Available	604	Open in IMG/M
3300012212\|Ga0150985_117798975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1653	Open in IMG/M
3300012212\|Ga0150985_117828483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	971	Open in IMG/M
3300012212\|Ga0150985_119248922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	1200	Open in IMG/M
3300012212\|Ga0150985_121177826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	940	Open in IMG/M
3300012212\|Ga0150985_121678795	Not Available	967	Open in IMG/M
3300012212\|Ga0150985_121681581	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300012212\|Ga0150985_123035192	Not Available	2236	Open in IMG/M
3300012469\|Ga0150984_104853947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Skermanella	1171	Open in IMG/M
3300012469\|Ga0150984_104883424	Not Available	573	Open in IMG/M
3300012469\|Ga0150984_105948976	Not Available	859	Open in IMG/M
3300012469\|Ga0150984_106196605	Not Available	615	Open in IMG/M
3300012469\|Ga0150984_107940427	Not Available	633	Open in IMG/M
3300012469\|Ga0150984_109868856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	650	Open in IMG/M
3300012469\|Ga0150984_111700164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1495	Open in IMG/M
3300012469\|Ga0150984_113717618	Not Available	712	Open in IMG/M
3300012469\|Ga0150984_117482688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	520	Open in IMG/M
3300012469\|Ga0150984_119751200	Not Available	1059	Open in IMG/M
3300012469\|Ga0150984_119790489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1580	Open in IMG/M
3300012469\|Ga0150984_123545655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3761	Open in IMG/M
3300014325\|Ga0163163_12761335	Not Available	548	Open in IMG/M
3300014326\|Ga0157380_11936630	Not Available	650	Open in IMG/M
3300017792\|Ga0163161_10224889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1454	Open in IMG/M
3300018432\|Ga0190275_11428993	Not Available	769	Open in IMG/M
3300018432\|Ga0190275_12456225	Not Available	599	Open in IMG/M
3300018465\|Ga0190269_11512278	Not Available	553	Open in IMG/M
3300018466\|Ga0190268_10667718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	755	Open in IMG/M
3300018469\|Ga0190270_11063872	Not Available	840	Open in IMG/M
3300019767\|Ga0190267_10712300	Not Available	648	Open in IMG/M
3300026075\|Ga0207708_10591530	Not Available	939	Open in IMG/M
3300027787\|Ga0209074_10054612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1232	Open in IMG/M
3300027909\|Ga0209382_11616884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	640	Open in IMG/M
3300028608\|Ga0247819_10513779	Not Available	710	Open in IMG/M
3300028809\|Ga0247824_10799008	Not Available	583	Open in IMG/M
3300028889\|Ga0247827_10944174	Not Available	582	Open in IMG/M
3300031548\|Ga0307408_102470988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	505	Open in IMG/M
3300031731\|Ga0307405_11151762	Not Available	669	Open in IMG/M
3300031824\|Ga0307413_10989363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	720	Open in IMG/M
3300031852\|Ga0307410_10592434	Not Available	924	Open in IMG/M
3300031901\|Ga0307406_11172919	Not Available	666	Open in IMG/M
3300031903\|Ga0307407_11187133	Not Available	596	Open in IMG/M
3300031911\|Ga0307412_10854608	Not Available	794	Open in IMG/M
3300031911\|Ga0307412_11690288	Not Available	580	Open in IMG/M
3300031911\|Ga0307412_11998145	Not Available	537	Open in IMG/M
3300031995\|Ga0307409_100307554	Not Available	1478	Open in IMG/M
3300031995\|Ga0307409_100669457	Not Available	1034	Open in IMG/M
3300031995\|Ga0307409_101561467	Not Available	688	Open in IMG/M
3300031995\|Ga0307409_102647716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	530	Open in IMG/M
3300032002\|Ga0307416_102188248	Not Available	654	Open in IMG/M
3300032002\|Ga0307416_103332320	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	538	Open in IMG/M
3300032002\|Ga0307416_103772255	Not Available	507	Open in IMG/M
3300032004\|Ga0307414_10368259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1239	Open in IMG/M
3300032004\|Ga0307414_11424494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	644	Open in IMG/M
3300032004\|Ga0307414_11643147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B506	599	Open in IMG/M
3300032004\|Ga0307414_11844541	Not Available	564	Open in IMG/M
3300032005\|Ga0307411_10631664	Not Available	925	Open in IMG/M
3300032005\|Ga0307411_10926614	Not Available	776	Open in IMG/M
3300032005\|Ga0307411_10981362	Not Available	755	Open in IMG/M
3300032005\|Ga0307411_11588810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	603	Open in IMG/M
3300032080\|Ga0326721_10139319	Not Available	1217	Open in IMG/M
3300032126\|Ga0307415_100352847	Not Available	1239	Open in IMG/M
3300032126\|Ga0307415_101389123	Not Available	668	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	78.30%
Environmental	Environmental	21.70%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	78.30%
Terrestrial	Environmental → Terrestrial	21.70%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	50.00%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.36%
Soil	Environmental → Terrestrial → Soil	21.70%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	38.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	22.64%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.15%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.32%
Loam	Environmental → Terrestrial → Soil → Loam	7.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.72%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	38.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	22.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.60%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.72%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.89%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	24.53%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	22.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.26%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	11.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.60%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.89%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.94%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1063983402	3300001431	Soil	MVETKTSHETLAAARMRRMRQRQGRGXFLVTLELEPDDLKALRVFSPDHAGQAIFRLIDRLKASR*
C688J35102_1180412852	3300002568	Soil	MVETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAS*
C688J35102_1196440593	3300002568	Soil	LHLCTAAWYIPAMTEMNTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALAVSSPDHAGQAIFRLIDRLKAAR*
C688J35102_1198212082	3300002568	Soil	MLAYYIPAMVETKTSHETLAAARMRRMRQRKGRGAFLVTLELEPDDLKALRVASPDLAGQAIFRLIDRLKASR*
Ga0063455_1005413011	3300004153	Soil	TAAWYIPAMVETKTSHETLAAARMRRMRRRKGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAAR*
Ga0063455_1015710911	3300004153	Soil	LPDVAEGQAKQISTRYPQQKLHLCMPAWYIPAMTEMRAQETLAAARMRRMRQRSRRGAFLVTLELEPDDLKALRVTSPDHAGQAIFRLIDRLKSSR*
Ga0063356_1049054221	3300004463	Arabidopsis Thaliana Rhizosphere	MDETNTSHQTLAAARMRRMRQRQGRGAFLVTLELETDDLKALRVASSDHAGQAIFRLIDRLKASR*
Ga0068853_1024344401	3300005539	Corn Rhizosphere	AKQMSSRYPQQKLHLCMSSWYIPTMTETKACQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPDHAGQAIFRLIDRLKASR*
Ga0070702_1004931831	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	AAWYNPAMVETKTSHETLAAARMRRMRQRRGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR*
Ga0068861_1017567901	3300005719	Switchgrass Rhizosphere	MVETTTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLKALRVSSPDLAGQAIFRLIDRLKASR*
Ga0068862_1022015021	3300005844	Switchgrass Rhizosphere	MDETNTSHQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAAR*
Ga0079222_101783612	3300006755	Agricultural Soil	MPSWYFAAMMETNTCQATPAARMRRMRQRRARGALLVTLELGPDDLAALGAATPDHAGQAIFRLIDRLKESR*
Ga0075430_1000289422	3300006846	Populus Rhizosphere	MNETKTRHETLAAARMRRMRQRARRGAFLVTLELEPDDLKALHVASPDLAGQAIFRLIDRLKSAR*
Ga0075431_1020748841	3300006847	Populus Rhizosphere	MPAWYNPAMVETKTSHETLAAARMRRMRQRARRGAFLVTLELEPDDLKALHVASPDLAGQAIFRLIDRLKSAR*
Ga0075420_1004312481	3300006853	Populus Rhizosphere	PTRYPQQELHLCMPSWYNPAMVETKTSHETLAAARMRRMRQRSRRGAFLVTLELEPDDLTALRVSSPNLAGQAIFRLIDRLKASG*
Ga0079217_108284371	3300006876	Agricultural Soil	MAETKTSYETLAAARMRRMRQRQGRGAFLVTLELDAQDLAVLRVSSPNLAGQTIFRLIDRLKASR*
Ga0079216_112346581	3300006918	Agricultural Soil	MVETKTSHETLAAARMRRMRRRQGRGAFLVTLELDVQDLAALRVKSPDHAGQAIFRLIDRLKAAR*
Ga0079216_117153142	3300006918	Agricultural Soil	MMETKTSHQTLAAARMRRMRQRSRRGAFLVTLELEPDDLKALRVASPDHAGQAIFRLIDRLKAAR*
Ga0111539_106152702	3300009094	Populus Rhizosphere	MPSWYIPAMIETKASQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLTALRVASPEHAGQAIFRLIDRLKAAR*
Ga0111539_108051272	3300009094	Populus Rhizosphere	MVETKTSHETLAAARMRRMRQRKGRGAFLVTLELEPDDLAALAVASPDLAGQAIFRLIDRLKASR*
Ga0111539_127457941	3300009094	Populus Rhizosphere	MDETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPNLAGQAIFRLIDRLKDAR*
Ga0111539_135089301	3300009094	Populus Rhizosphere	TKTSYETLAAARMRRMRQRARRGAFLVTLELDAQDLAALRVSSPNHAGQAIFRLIDRLKAAR*
Ga0105247_116150132	3300009101	Switchgrass Rhizosphere	MPSWYIPAMIETKASQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPNLAGQAIFRLIDRLKAAR*
Ga0114129_122161361	3300009147	Populus Rhizosphere	MSSRYPQQKLHLCTPAWYNPAMVETKTSHETLAAARMRRMRQRSRRGAFLVTLELEPDDLAALRVSSPDHAGQAIFRLIDRLKASR*
Ga0111538_112595141	3300009156	Populus Rhizosphere	MSSRYPQQKLHLCTPAWYNPAMVETKTSHETLAAARMRRMRQRSRRGAFLVTLELEPDDLAALRVSSPDHAGQAIFRLIDRLK
Ga0111538_124096331	3300009156	Populus Rhizosphere	MTETKMFQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLKALRVASPDHAGQAIFRLIDRLKAAR*
Ga0111538_127277921	3300009156	Populus Rhizosphere	MPSWYNLAMMAMKACQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLKALRVTSPDHAGQAIFRLIDRLKAAR*
Ga0111538_138949911	3300009156	Populus Rhizosphere	MDETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPDRVGQAIFRLIDRLKASR*
Ga0150985_1005810011	3300012212	Avena Fatua Rhizosphere	TKTSHETLAAARMRRMRQRKGRGAFLVTLELEPDDLAALRVASPDHTGQAIFRLIDRLKAVL*
Ga0150985_1021059551	3300012212	Avena Fatua Rhizosphere	MIKTKTSHETLAAARMRRMRQRKGRGAFLVTLELEPDDLAALRVTSPDHAGQAIFRLIDRLKAVR*
Ga0150985_1027064583	3300012212	Avena Fatua Rhizosphere	GYQETLAAARMRRMRQRSRRGAFLVILELEPDDLAALRVTSSDHAGQAIFRLIDRLKAAR
Ga0150985_1030447114	3300012212	Avena Fatua Rhizosphere	RMRRMRQRARRGAFLVTLELEPDDLAALRVPSPDLAGQAIFRLIDRLKAAR*
Ga0150985_1038985141	3300012212	Avena Fatua Rhizosphere	PTRYPQQELHLRMLAYYIPAMVETKTSHETLAAARMRRMRQRKGRGAFLVTLELEPDDLKALRVASPDLAGQAIFRLIDRLKASR*
Ga0150985_1040925332	3300012212	Avena Fatua Rhizosphere	MVETKTSHETLAAARMRRMRQRQGRGVFLVTLELEPDDLAALRVASPDHAGQAIFRLID
Ga0150985_1062250781	3300012212	Avena Fatua Rhizosphere	KTSHETLAAARMRRMRQRQGRGAFLVTLELEPGDLKALRVASPDHAGQAIFRLIDRLKAAR*
Ga0150985_1068582871	3300012212	Avena Fatua Rhizosphere	MIETKTSHETLAAARMRRMRRRQGRGAFLVTLELEPDDLKALRVPSPDLAGRAIFRLIDRLKGAR*
Ga0150985_1071087541	3300012212	Avena Fatua Rhizosphere	TLAAARMRRMRQRQGRGAFLVTLELEPDDLKALRVTSPDHAGQAIFRLIDRLKASR*
Ga0150985_1106077482	3300012212	Avena Fatua Rhizosphere	MAAWYIPAMVETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAS*
Ga0150985_1109378701	3300012212	Avena Fatua Rhizosphere	MVETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR*
Ga0150985_1109563722	3300012212	Avena Fatua Rhizosphere	MVETKACQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAVLRVASPDHAGQAIFRLIDRLKAAR*
Ga0150985_1126493672	3300012212	Avena Fatua Rhizosphere	HETLAAARMRRMRQRSRRGAFLVTLELEPDDLAALAVSSPDLAGQAIFRLIDRLKDAR*
Ga0150985_1134008562	3300012212	Avena Fatua Rhizosphere	KTSQQTLAAARMRRMRQRRDRGALLVTLELEPDDLVALRVATPDHAGQAIFRMIDRLKGSG*
Ga0150985_1139152621	3300012212	Avena Fatua Rhizosphere	NTSHQTLAAARMRRMRQRARRGAFLVTLELEPDDLAALRVSSPDHAGQAIFRLIDRLKASR*
Ga0150985_1145015751	3300012212	Avena Fatua Rhizosphere	MMQTKASQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR*
Ga0150985_1146575652	3300012212	Avena Fatua Rhizosphere	QQLYCRMDSWYLLDMSEKKGYQETSAAARMRRMRQRSRRGAFLVTLELEPDDLTALQAKSPHHAGQAIFRLIDQLKAA*
Ga0150985_1177989751	3300012212	Avena Fatua Rhizosphere	MNETKASHETLAAARMRRMRQRQGRGAFLVTLELEPDDVKALRVPSPDHAGPAIFRLIDRLKASR*
Ga0150985_1178284833	3300012212	Avena Fatua Rhizosphere	MVETNTSHQTLAAARMRRMRQRARRGAFLVTLELEPDDLAALRVASPDHAGQTIFRLIDRLKAAR*
Ga0150985_1192489221	3300012212	Avena Fatua Rhizosphere	ARMRRMRQRARRGAFLVTLELEPDDLAALAVASPDHAGQAIFRLIDRLKGAR*
Ga0150985_1211778263	3300012212	Avena Fatua Rhizosphere	ACQQTLAAARMRRMRQRQGRGAFLVTLEFEPDDLAALRVPSPDLAGQAIFRLIDRLKASR
Ga0150985_1216787952	3300012212	Avena Fatua Rhizosphere	AARMRRMRRRQGRGAFLVTLELEPDDLAALAVSSPDLAGQAIFRLIDRLKAAR*
Ga0150985_1216815812	3300012212	Avena Fatua Rhizosphere	AARMRRMRRRQGRGAFLVTLELEPDDLAALRVSSPNLAGQAIFRLIDRLKASR*
Ga0150985_1230351921	3300012212	Avena Fatua Rhizosphere	QETLAAARMRRMRQRSRRGAFLVTLELEPDDLKALRVTSPDHAGQAIFRLIDRLKSSR*
Ga0150984_1048539471	3300012469	Avena Fatua Rhizosphere	QTLAAARMRRMRQRARRGAFLVTLELEPDDLAALAVASPDHAGQAIFRLIDRLKGAR*
Ga0150984_1048834242	3300012469	Avena Fatua Rhizosphere	LAAARMRRMRRRQGRGAFLVTLELEPDDLAALRVPSPDLAGQAIFRLIDRLKTAR*
Ga0150984_1059489761	3300012469	Avena Fatua Rhizosphere	TKTSQQTLAAARMRRMRQRRDRGALLVTLELEPDDLVALRVATPDHAGQAIFRMIDRLKGSG*
Ga0150984_1061966052	3300012469	Avena Fatua Rhizosphere	EMKACHQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPDLAGQAIFRLIDRLKAAR*
Ga0150984_1079404272	3300012469	Avena Fatua Rhizosphere	MTAWYIPAMTEMKTSQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAVLRVASPDHAGQAIFRLIDRLKAAR*
Ga0150984_1098688561	3300012469	Avena Fatua Rhizosphere	KISHETLAAARMRRMRQRQGRGAFLVTLELDAQDLAALRVPSPDLAGQAIFRLIDRLKASR*
Ga0150984_1117001641	3300012469	Avena Fatua Rhizosphere	KGYQETLAAARMRRMRQRSRRGAFLVILELEPDDLAALRVTSSDHAGQAIFRLIDRLKAAR*
Ga0150984_1137176182	3300012469	Avena Fatua Rhizosphere	KTSHETLAAARMRRMRRRQGRGAFLVTLELEPDDLAALAVSSPDLAGQAIFRLIDRLKAAR*
Ga0150984_1174826881	3300012469	Avena Fatua Rhizosphere	TSHQTLAAARMRRMRQRSRRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAAR
Ga0150984_1197512003	3300012469	Avena Fatua Rhizosphere	MSEKKEYQETSAAARMRRMRQRSRRGAFLLTLELEPDDLTALQAKSPHHAGQAIFRLIDQLKAA*
Ga0150984_1197904891	3300012469	Avena Fatua Rhizosphere	MKACQQTLAAARMRRMRQRQGRGAFLVTLEFEPDDLAALRVPSPDLAGQAIFRLIDRLKASR*
Ga0150984_1235456556	3300012469	Avena Fatua Rhizosphere	AARMRRMRQRARRGAFLVTLELEPDDLAALRVSSPDHAGQAIFRLIDRLKASR*
Ga0163163_127613351	3300014325	Switchgrass Rhizosphere	MPSWYIPAMIETKASQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPNHAGQAIFRLIDRLKSSR*
Ga0157380_119366302	3300014326	Switchgrass Rhizosphere	MNETKTSYETLAAARMRRMRQRARRGAFLVTLELEPDDLTALRVASPEHAGQAIFRLIDRLKAAR*
Ga0163161_102248892	3300017792	Switchgrass Rhizosphere	MIETKASQQTLSAARMRRMRQRQGRGAFLVTLELEPDDLTALRVASPEHAGQAIFRLIDRLKAAR
Ga0190275_114289931	3300018432	Soil	KTSHETLAAARMRRMRQRSRRGAFLVTLELEPDDLAALRVASPDLAGQAIFRLIDRLKAS
Ga0190275_124562251	3300018432	Soil	MSEKKGYQETSAAARMRRMRQRSRRGAFLVTLELEPDDLTALRVASPNHAGQAIFRLIDQLKAAR
Ga0190269_115122782	3300018465	Soil	MMEKKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVTSPDHAGQAIFRLIDRLKASR
Ga0190268_106677182	3300018466	Soil	MNETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALAVASPDHAGQAIFRLIDRLKPAR
Ga0190270_110638721	3300018469	Soil	MKETNTSHQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALAVTSPDHAGQAIFRLIDRLKASR
Ga0190267_107123002	3300019767	Soil	MVKTKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLIDRLKAAR
Ga0207708_105915301	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MSEKKQYQETSAAARMRRMRQRSRRGAFLVTLELEPDDLKALRVASPDHAGQAIFRLIDRLKAAR
Ga0209074_100546121	3300027787	Agricultural Soil	MPSWYFAAMMETNTCQATPAARMRRMRQRRARGALLVTLELGPDDLAALGAATPDHAGQAIFRLIDRLKESR
Ga0209382_116168841	3300027909	Populus Rhizosphere	MNETKTRHETLAAARMRRMRQRARRGAFLVTLELEPDDLKALHVASPDLAGQAIFRLIDRLKSAR
Ga0247819_105137792	3300028608	Soil	MDETNTSHQTLAAARMRRMRQRQGRGAFLVTLELETDDLKALRVASSDHAGQAIFRLIDRLKASR
Ga0247824_107990082	3300028809	Soil	MPSWYIPAMIETKASQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLTALRVASPEHAGQAIFRLIDRLKAAR
Ga0247827_109441742	3300028889	Soil	ARMRRMRQRQGRGAFLVTLELEPDDLTALRVASPEHAGQAIFRLIDRLKAAR
Ga0307408_1024709881	3300031548	Rhizosphere	MMEMKACQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLKALRVSSPDLAGQAIFRLIDRLKGAR
Ga0307405_111517621	3300031731	Rhizosphere	MMETKTSHETLAAARMRRMRQRQGRGAFLVTLELDPDDLKALRVSSPDHAGQAIFRLIDRLKAAR
Ga0307413_109893631	3300031824	Rhizosphere	MIEMKACQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPDHAGQVIFRLIDRLKTAR
Ga0307410_105924341	3300031852	Rhizosphere	MPAWYNPAMVETKTSHETLSAARMRRMRRRQGRGAFLVTLELEPEDLKALRVSSPDLAGQAIFRLIDRLKTAR
Ga0307406_111729191	3300031901	Rhizosphere	MVETKTSHQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPDLAGQAIFRLIDRLKAVL
Ga0307407_111871331	3300031903	Rhizosphere	MNETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLKALRVTSPDHAGQAIFRLIDRLKAAR
Ga0307412_108546081	3300031911	Rhizosphere	MTEMNTSHETLAAARMRRMRRRKGRGAFLVTLELELDDLKALRVPSPDLAGQAIFRLID
Ga0307412_116902881	3300031911	Rhizosphere	MPTCYPQQELHLCIPSWYIPAMMETKASQQTLAAVRMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR
Ga0307412_119981451	3300031911	Rhizosphere	MVETKAYHETLAAARMRRMRRRQGRGAFLVTLELEPDDLAALRVPSPDLAGQAIFRLIDRLKAVR
Ga0307409_1003075543	3300031995	Rhizosphere	MTEMNTSHETLAAARMRRMRRRKGRGAFLVTLELEPDDLKALRVPSPDLAGQAIFRLIDRLKAAR
Ga0307409_1006694571	3300031995	Rhizosphere	MTAWYIPAMVETKASHQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAS
Ga0307409_1015614672	3300031995	Rhizosphere	MMETKTCQATSAAARMRRMRQRRDRGALLVTLELGPDDLAALRVMTPDQAGQAIFRLIDRLKGSQ
Ga0307409_1026477161	3300031995	Rhizosphere	MLSWYIPAMTNTSQQTLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVSSPNLAGQAIFRLIDRLKVAR
Ga0307416_1021882481	3300032002	Rhizosphere	KTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLKALAVSSPDLAGQAIFRLIDRLKAA
Ga0307416_1033323201	3300032002	Rhizosphere	MNETKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR
Ga0307416_1037722551	3300032002	Rhizosphere	MTEMNTSHETLAAARMRRMRRRKGRGAFLVTLELELDDLKALRVPSPDLAGQAIFRLIDRLKAAR
Ga0307414_103682591	3300032004	Rhizosphere	MVETNTSHETLAAARMRRMRRRQGRGAFLVTLELEPDDLKALRVSSPDLAGQAIFRLIDRLKGAR
Ga0307414_114244941	3300032004	Rhizosphere	TSHETLAAARMRRMRRRQGRGAFLVTLELEPDDLAALRVPSPDLAGQAIFRLIDRLKGAR
Ga0307414_116431472	3300032004	Rhizosphere	LCTAAWYIPAMTEMNTSYETLAAARMRRMRRRKGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKAAR
Ga0307414_118445411	3300032004	Rhizosphere	MPAWYNPAMVETKTSHETLSAARMRRMRRRQGRGAFLVTLELEPDDLAALRVTSPDHAGQAIFQLIDRLGPAPTVVS
Ga0307411_106316642	3300032005	Rhizosphere	MTEMNTSHETLAAARMRRMRRRKGRGAFLVTLELESDDLKALRVTSPDHAGQAIFRLIDRLKAAR
Ga0307411_109266143	3300032005	Rhizosphere	MSKKKGYQETSAAARMRRMRQRQRRGAFVVTLELEPDDLTALRVTSPDHAGQAIFRLIDRLKAAR
Ga0307411_109813622	3300032005	Rhizosphere	MAPWYLNAMMETKAHQTTSAARMRRMRQRWDREAFLMALEREPDDLAALRVASPDHAGQAIFRLIDRLKASR
Ga0307411_115888101	3300032005	Rhizosphere	MVQTKTSHETLAAARMRRMRQRQGRGAFLVTLELEPDDLAALRVASPDHAGQAIFRLIDRLKASR
Ga0326721_101393193	3300032080	Soil	MPSWYIPAMNETKTSHQTLAAARMRRMRQRSRRGAFLVTLELEPDDLAALAVTSPDHAGQAIFRLIDRLKASR
Ga0307415_1003528474	3300032126	Rhizosphere	MAPWYLDAMMETKAHQTTSAARMRRMRQRWDREAFLMALEREPDDLAALRVASPDHAGQAIFRLIDRLKASR
Ga0307415_1013891232	3300032126	Rhizosphere	MPAWYIPAMTETNTSQQTLAAARMRRMRQRSRRGAFLVTLELEPDDLAALRVSSPDHAGQAIFRLIDRLKAAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094549

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences