NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F094605

Metagenome Family F094605

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094605
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 58 residues
Representative Sequence MTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK
Number of Associated Samples 79
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 24.53 %
% of genes from short scaffolds (< 2000 bps) 83.02 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (76.415 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(31.132 % of family members)
Environment Ontology (ENVO) Unclassified
(71.698 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(81.132 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.85%    β-sheet: 0.00%    Coil/Unstructured: 46.15%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF00118Cpn60_TCP1 0.95
PF04542Sigma70_r2 0.95
PF01510Amidase_2 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0459Chaperonin GroEL (HSP60 family)Posttranslational modification, protein turnover, chaperones [O] 0.95
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.95
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.95
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.95
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A76.42 %
All OrganismsrootAll Organisms23.58 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2006543006|2006909634Not Available763Open in IMG/M
2006543006|2006916885Not Available809Open in IMG/M
2006543006|2006917587Not Available813Open in IMG/M
2236876005|none_p140457Not Available534Open in IMG/M
3300000101|DelMOSum2010_c10067403All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1672Open in IMG/M
3300000116|DelMOSpr2010_c10207643Not Available623Open in IMG/M
3300000116|DelMOSpr2010_c10218121Not Available600Open in IMG/M
3300000149|LPaug09P1610mDRAFT_c1023964Not Available747Open in IMG/M
3300000159|LPaug08P2610mDRAFT_c1006858All Organisms → Viruses → Predicted Viral1571Open in IMG/M
3300000265|LP_A_09_P04_10DRAFT_1067616Not Available508Open in IMG/M
3300001450|JGI24006J15134_10027512All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2533Open in IMG/M
3300001450|JGI24006J15134_10043510All Organisms → Viruses → Predicted Viral1885Open in IMG/M
3300001450|JGI24006J15134_10161725Not Available722Open in IMG/M
3300001450|JGI24006J15134_10231365Not Available543Open in IMG/M
3300001460|JGI24003J15210_10010322All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium3793Open in IMG/M
3300001460|JGI24003J15210_10054542All Organisms → Viruses → Predicted Viral1317Open in IMG/M
3300001460|JGI24003J15210_10164358Not Available553Open in IMG/M
3300001472|JGI24004J15324_10037303Not Available1528Open in IMG/M
3300001472|JGI24004J15324_10124356Not Available628Open in IMG/M
3300001472|JGI24004J15324_10137111Not Available580Open in IMG/M
3300001718|JGI24523J20078_1016860Not Available927Open in IMG/M
3300001718|JGI24523J20078_1020451All Organisms → cellular organisms → Bacteria810Open in IMG/M
3300002524|JGI24927J35514_1012660Not Available658Open in IMG/M
3300002524|JGI24927J35514_1012660Not Available658Open in IMG/M
3300005239|Ga0073579_1151058Not Available895Open in IMG/M
3300005239|Ga0073579_1377134Not Available752Open in IMG/M
3300005590|Ga0070727_10212412Not Available1084Open in IMG/M
3300005600|Ga0070726_10712192Not Available507Open in IMG/M
3300005747|Ga0076924_1049313All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon6868Open in IMG/M
3300005825|Ga0074476_1718485Not Available577Open in IMG/M
3300005828|Ga0074475_10786837Not Available525Open in IMG/M
3300005828|Ga0074475_10993918Not Available901Open in IMG/M
3300006467|Ga0099972_10244021Not Available908Open in IMG/M
3300006802|Ga0070749_10229701Not Available1056Open in IMG/M
3300006868|Ga0075481_10126788Not Available938Open in IMG/M
3300006870|Ga0075479_10075781Not Available1410Open in IMG/M
3300006916|Ga0070750_10206812Not Available866Open in IMG/M
3300006919|Ga0070746_10026113All Organisms → Viruses → Predicted Viral3174Open in IMG/M
3300006924|Ga0098051_1152093Not Available611Open in IMG/M
3300007229|Ga0075468_10191690Not Available600Open in IMG/M
3300007863|Ga0105744_1186892Not Available520Open in IMG/M
3300007974|Ga0105747_1190848Not Available673Open in IMG/M
3300008012|Ga0075480_10052870All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2377Open in IMG/M
3300008012|Ga0075480_10248162Not Available922Open in IMG/M
3300008996|Ga0102831_1137745Not Available810Open in IMG/M
3300009026|Ga0102829_1192345Not Available661Open in IMG/M
3300009079|Ga0102814_10126772Not Available1397Open in IMG/M
3300009086|Ga0102812_10057188All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2165Open in IMG/M
3300009086|Ga0102812_10594813Not Available607Open in IMG/M
3300009136|Ga0118735_10010624All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2971Open in IMG/M
3300009172|Ga0114995_10478136Not Available682Open in IMG/M
3300009422|Ga0114998_10630665Not Available505Open in IMG/M
3300009432|Ga0115005_11258117Not Available603Open in IMG/M
3300009512|Ga0115003_10943467Not Available501Open in IMG/M
3300009705|Ga0115000_10094062All Organisms → Viruses → Predicted Viral2021Open in IMG/M
3300009705|Ga0115000_10712582Not Available619Open in IMG/M
3300009785|Ga0115001_10942338Not Available518Open in IMG/M
3300010392|Ga0118731_102975738Not Available816Open in IMG/M
3300013010|Ga0129327_10348585Not Available775Open in IMG/M
3300017726|Ga0181381_1041222Not Available1023Open in IMG/M
3300017727|Ga0181401_1173203Not Available517Open in IMG/M
3300017742|Ga0181399_1129049Not Available615Open in IMG/M
3300017743|Ga0181402_1133662Not Available632Open in IMG/M
3300017746|Ga0181389_1165049Not Available583Open in IMG/M
3300017749|Ga0181392_1233626Not Available521Open in IMG/M
3300017750|Ga0181405_1178327Not Available519Open in IMG/M
3300017751|Ga0187219_1118781Not Available786Open in IMG/M
3300017757|Ga0181420_1126892Not Available772Open in IMG/M
3300020165|Ga0206125_10261452Not Available656Open in IMG/M
3300021957|Ga0222717_10547084Not Available616Open in IMG/M
3300021957|Ga0222717_10604568Not Available574Open in IMG/M
3300021959|Ga0222716_10448809Not Available737Open in IMG/M
(restricted) 3300023210|Ga0233412_10393675Not Available619Open in IMG/M
(restricted) 3300024059|Ga0255040_10021862Not Available2215Open in IMG/M
(restricted) 3300024059|Ga0255040_10340753Not Available631Open in IMG/M
3300024346|Ga0244775_10020445All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium6040Open in IMG/M
3300024346|Ga0244775_10147502All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium1986Open in IMG/M
(restricted) 3300024519|Ga0255046_10671126Not Available501Open in IMG/M
(restricted) 3300024520|Ga0255047_10606773Not Available548Open in IMG/M
3300025048|Ga0207905_1009945All Organisms → Viruses → Predicted Viral1677Open in IMG/M
3300025048|Ga0207905_1037419Not Available772Open in IMG/M
3300025048|Ga0207905_1047257Not Available668Open in IMG/M
3300025071|Ga0207896_1003669All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2868Open in IMG/M
3300025071|Ga0207896_1072812Not Available533Open in IMG/M
3300025071|Ga0207896_1076237Not Available516Open in IMG/M
3300025120|Ga0209535_1007189Not Available6631Open in IMG/M
3300025137|Ga0209336_10038461Not Available1556Open in IMG/M
3300025168|Ga0209337_1165298Not Available940Open in IMG/M
3300025508|Ga0208148_1050388All Organisms → Viruses → Predicted Viral1031Open in IMG/M
3300025570|Ga0208660_1104349Not Available619Open in IMG/M
3300025645|Ga0208643_1000119Not Available50870Open in IMG/M
3300025653|Ga0208428_1053173All Organisms → Viruses → Predicted Viral1225Open in IMG/M
3300027186|Ga0208797_1045715Not Available556Open in IMG/M
3300027779|Ga0209709_10102770All Organisms → Viruses → Predicted Viral1493Open in IMG/M
3300027788|Ga0209711_10340949Not Available634Open in IMG/M
3300027791|Ga0209830_10341016Not Available654Open in IMG/M
(restricted) 3300027861|Ga0233415_10028292All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium2261Open in IMG/M
(restricted) 3300027881|Ga0255055_10676130Not Available551Open in IMG/M
3300027980|Ga0209475_10274085Not Available729Open in IMG/M
3300028125|Ga0256368_1037001Not Available869Open in IMG/M
3300031519|Ga0307488_10007828All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium8747Open in IMG/M
3300031519|Ga0307488_10018937All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium5565Open in IMG/M
3300031519|Ga0307488_10305548Not Available1022Open in IMG/M
3300031519|Ga0307488_10745455Not Available548Open in IMG/M
3300031637|Ga0302138_10001023All Organisms → cellular organisms → Bacteria13880Open in IMG/M
3300034375|Ga0348336_022764All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon3174Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine31.13%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous12.26%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater11.32%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine5.66%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine4.72%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.77%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine3.77%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine2.83%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment2.83%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.83%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine2.83%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)2.83%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.89%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.89%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.89%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine1.89%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.94%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.94%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.94%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.94%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.94%
Marine SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2006543006Marine microbial communities from anoxic basin of Saanich Inlet - SI040908_100EnvironmentalOpen in IMG/M
2236876005Estuarine microbial communities from Columbia River, sample from South Channel ETM site, GS313-3LG-ETM-15mEnvironmentalOpen in IMG/M
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000149Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2009 P16 10mEnvironmentalOpen in IMG/M
3300000159Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - August 2008 P26 10mEnvironmentalOpen in IMG/M
3300000265Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_A_09_P04_10EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300001718Marine viral communities from the Pacific Ocean - LP-48EnvironmentalOpen in IMG/M
3300002524Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C49A8_35EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005590Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2EnvironmentalOpen in IMG/M
3300005600Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.1EnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300005825Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBBEnvironmentalOpen in IMG/M
3300005828Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBIEnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006868Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007863Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459B_0.2umEnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300008996Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747EnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009136Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 82 cmbsfEnvironmentalOpen in IMG/M
3300009172Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154EnvironmentalOpen in IMG/M
3300009422Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138EnvironmentalOpen in IMG/M
3300009432Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M MetagenomeEnvironmentalOpen in IMG/M
3300009512Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009785Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130EnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017726Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017749Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300020165Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160331_1EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024519 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27EnvironmentalOpen in IMG/M
3300024520 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1EnvironmentalOpen in IMG/M
3300025048Marine viral communities from the Subarctic Pacific Ocean - LP-49 (SPAdes)EnvironmentalOpen in IMG/M
3300025071Marine viral communities from the Pacific Ocean - LP-36 (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025570Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027186Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027788Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88 (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300027861 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MGEnvironmentalOpen in IMG/M
3300027881 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_27EnvironmentalOpen in IMG/M
3300027980Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd47.1 (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300031637Marine microbial communities from Western Arctic Ocean, Canada - CBN3_32.1EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
20070588612006543006MarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMR
20070668282006543006MarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDYPTLKDSSNMT
20070676182006543006MarineMNHKELITFDKVFQYYLNDNDLDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS
none_14045712236876005Marine EstuarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYLTTMEAHTIHLEVWNEPVPPCMSNMT
DelMOSum2010_1006740313300000101MarineMTLQELTTFDRVFQNYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS*
DelMOSpr2010_1020764313300000116MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYLTTMETHTIHLEVWNEPVPPCMK*
DelMOSpr2010_1021812133300000116MarineMTLQELTTFDRVFQSYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
LPaug09P1610mDRAFT_102396413300000149MarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
LPaug08P2610mDRAFT_100685823300000159MarineMTLQELTTFDRVFQNYLLEHDHDEDARDLYIETMQAHTTHLEVWNDIFDIPTLKDSSDMT
LP_A_09_P04_10DRAFT_106761613300000265MarineMTLQELTTFDRVFQNYLNDNDHDXXAXDLYLTTMEAHTIHLEVWNEPXPPCMK*
JGI24006J15134_1002751253300001450MarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPV
JGI24006J15134_1004351053300001450MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYLTTMETHTTHLEVWNNMT*
JGI24006J15134_1016172523300001450MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMK*
JGI24006J15134_1023136513300001450MarineMTLQELTTFDRVFRDYLDRNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
JGI24003J15210_1001032253300001460MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHATHIKVWNDIFDIPQLKDINDMMDRMS*
JGI24003J15210_1005454213300001460MarineMTLQELTTFDRVFQNYLLEYDHDEDARDLYITTMQAHKTHLEVWNNMT*
JGI24003J15210_1016435813300001460MarineMTLQELXTFDRVFQNYLNDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
JGI24004J15324_1003730333300001472MarineMTLQELTTFDRVFQNYLLEYEHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYNEPVPPCMK*
JGI24004J15324_1012435623300001472MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPT
JGI24004J15324_1013711113300001472MarineMTLQELTTFDRVFQNYLNDNDHDXDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
JGI24523J20078_101686013300001718MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKNYDEPVPPCMK*
JGI24523J20078_102045113300001718MarineMTLQELTTFDRVFQNYLLEYEHDEDARDLYITTMQAHTTHLEVWNNMT*
JGI24927J35514_101266013300002524MarineMTLQEXTTFDRVFQNYLNDNDHDXXAXDLYLTTMEAHTIHLEVWNEPVPPCMK*
JGI24927J35514_101266023300002524MarineMSYVILSLTQNYLNDNDHDEEARDLYLTTMEAHTIHLEVWNEPVPPCMK*
Ga0073579_115105823300005239MarineMTLQELTTFDRVFLDYLDRNNHDEDARDLYLTTMETHTTHLEVWNDMTQCRTTYCH*
Ga0073579_137713423300005239MarineMTLQELTTFDRVFQNYLHDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0070727_1021241243300005590Marine SedimentMTLQELTTFDRVFQSYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0070726_1071219213300005600Marine SedimentMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0076924_104931313300005747MarineYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0074476_171848513300005825Sediment (Intertidal)MTLQELTTFDRVFQNYLNDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
Ga0074475_1078683713300005828Sediment (Intertidal)MNHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS*
Ga0074475_1099391823300005828Sediment (Intertidal)MTLQELTTFDRVFQNYLNDNDHDEEARDLYLTTMEAHTIHLEVWNEPVPPCMK*
Ga0099972_1024402143300006467MarineDRVFQNYLNDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
Ga0070749_1022970143300006802AqueousMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTIHLEVWNEPVPPCMK*
Ga0075481_1012678813300006868AqueousLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDSSDMT*
Ga0075479_1007578113300006870AqueousMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDY
Ga0070750_1020681233300006916AqueousMTLQELTTFDRVFLDYLDRNDHDEDARDLYLTTMEAHTIHLEVWNGPVPPCMK*
Ga0070746_1002611313300006919AqueousHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS*
Ga0098051_115209313300006924MarineMNHKELITFDKVFQYYLNDNDLDEEARDFYIETMEAHATHIKTWNDIFDIPVLKDINDMMNRMS*
Ga0075468_1019169013300007229AqueousFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0105744_118689213300007863Estuary WaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMR*HNVVCHTVTDALS*H
Ga0105747_119084813300007974Estuary WaterELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMK*
Ga0075480_1005287013300008012AqueousMTLQELTTFDLVFQNYLNDNDHDEDARDLYIETMEAHTIHLEVWNEPVPPCMK*
Ga0075480_1024816213300008012AqueousQELTTFDRVFQNYLTDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
Ga0102831_113774513300008996EstuarineMNHKELITFDKVFQYYLNDNDFDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS*
Ga0102829_119234513300009026EstuarineKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS*
Ga0102814_1012677233300009079EstuarineMNHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDVPVLKDINDMMNRMS*
Ga0102812_1005718813300009086EstuarineMTLQELTTYDRVFQNYLNDHDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK*
Ga0102812_1059481313300009086EstuarineMNHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHATHIKIWNDIFDIPVLKDINDMMNRMS*
Ga0118735_1001062463300009136Marine SedimentMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDYPTLKDSSDMT
Ga0114995_1047813623300009172MarineMTLQELTTFDRVFQNYLNDHDHDEDARDLYIETMEAHTTHLEVWNDIFDIPQLKDINDMMNRMS*
Ga0114998_1063066513300009422MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDIPQLKDINDMMNRMS*
Ga0115005_1125811723300009432MarineMTLQELTTFDRVFQNYLLEHDHDEDARDLYIETMQAHTTHLEVWNDIFDIPTLKDYDEPVPPCMK*
Ga0115003_1094346713300009512MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAPTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0115000_1009406213300009705MarineELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMK*
Ga0115000_1071258213300009705MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEIWNDIFDIPQLKDINDMMNRMS*
Ga0115001_1094233813300009785MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEIWNDIF
Ga0118731_10297573813300010392MarineMTLQELTTFDRVFQNYLNDNDHDEDARNLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK*
Ga0129327_1034858513300013010Freshwater To Marine Saline GradientMTLQELTTFDRVFQNYLNDNDHDEYARDLYLTTMEAHTIHLEVWNEPV
Ga0181381_104122233300017726SeawaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYLTTMEAHTIHLEVWNDIFDFPTLKDYDEPVPPCMR
Ga0181401_117320313300017727SeawaterMTHKELITFDKVFQYYLNDNDLDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINEMMNRMT
Ga0181399_112904913300017742SeawaterTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMR
Ga0181402_113366213300017743SeawaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYLTTMEAHTTHLEAWNDIFDFPTLKDYDEPVPPCMR
Ga0181389_116504913300017746SeawaterMNHKELITFDKVFQYYLNDNDLDEEARDFYIETMEAHATHIKIWNDIFDIPVLKDINDMMNRMS
Ga0181392_123362613300017749SeawaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYLITMEAHTIHLEVWNEPVPPCMK
Ga0181405_117832713300017750SeawaterMTLQELTTFDRVFQNYLNDNDHDEEARDLHLTTMEAHTIHLEVWNEPVPPCMK
Ga0187219_111878113300017751SeawaterMTHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS
Ga0181420_112689213300017757SeawaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMRXRNVVCHTVTDTLSXHNTLTIN
Ga0206125_1026145223300020165SeawaterMTHKELITFDKVFQYYLNDNDLDEEARDFYIDTMEAHTTHIKIWNDIFDIPVLKDINEMMNRMK
Ga0222717_1054708413300021957Estuarine WaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYLTTMEAHTIHLEVWNEP
Ga0222717_1060456813300021957Estuarine WaterMTLQELTTFDRVFQNYLNDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK
Ga0222716_1044880923300021959Estuarine WaterNYLNDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK
(restricted) Ga0233412_1039367513300023210SeawaterMTLQELTTFDRVFQNYLLEHDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMR
(restricted) Ga0255040_1002186293300024059SeawaterMTLQELTTFDRVFQNYLNDNDHDEDARDLYLTSMEAHTIHLEVWNEPVPPCMK
(restricted) Ga0255040_1034075313300024059SeawaterQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMR
Ga0244775_1002044593300024346EstuarineMNHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDIPVLKDINDMMNRMS
Ga0244775_1014750243300024346EstuarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYLTTMEAHTIHLEVWNEPVPPCMK
(restricted) Ga0255046_1067112613300024519SeawaterMTLQELTTFDRVFQNYLNDNEHDEDARDLYLTTMETHTIHLEVWNEPVPPCMK
(restricted) Ga0255047_1060677313300024520SeawaterMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMK
Ga0207905_100994573300025048MarineMTLQELTTFDRVFQNYLLEHEHDDDARDLYITTMQAHTNHLEVWNWIDDPKPPCMK
Ga0207905_103741923300025048MarineMTLQELTTFDRVFQNYLLEYEHDEDAQDLYITTMQAHTTHLEVWNNMT
Ga0207905_104725713300025048MarineMTLQELTTFDRVFLDYLDRNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK
Ga0207896_100366913300025071MarineMTLQELTTFDRVFQNYLNDNDHDEEARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK
Ga0207896_107281223300025071MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYLTTMETHTTHLEVWNNMT
Ga0207896_107623713300025071MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMKXHNV
Ga0209535_100718953300025120MarineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHATHIKVWNDIFDIPQLKDINDMMDRMS
Ga0209336_1003846123300025137MarineMTLQELTTFDRVFQNYLLEYEHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYNEPVPPCMK
Ga0209337_116529823300025168MarineMTLQELTTFDRVFRDYLDRNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK
Ga0208148_105038813300025508AqueousTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK
Ga0208660_110434913300025570AqueousRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK
Ga0208643_100011913300025645AqueousMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK
Ga0208428_105317353300025653AqueousQELTTFDRVFQNYLNDNDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK
Ga0208797_104571513300027186EstuarineMNHKELITFDKVFQYYLNDNDCDEEARDFYIETMEAHTTHIKIWNDIFDI
Ga0209709_1010277013300027779MarineMTLQELTTFDRVFQNYLNDHDHDEDARDLYIETMEAHTTHLEVWNDIFDIPQLKDINDMMNRMS
Ga0209711_1034094923300027788MarineNMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDIPTLKDYDEPVPPCMK
Ga0209830_1034101623300027791MarineMTLQELTTFDRVFQNYLSDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDSSNMT
(restricted) Ga0233415_1002829213300027861SeawaterMNHKELITFDKVFQYYLNDNDLDEEARDFYIETMEAHTIHIKIWNDIFDIPVLKDINDMMNRMS
(restricted) Ga0255055_1067613013300027881SeawaterMTLQELTTFDRVFQNYLLEHDHDEDARDLYLTTMEAHTIHLEVWNEPVPPCMK
Ga0209475_1027408523300027980Marine SedimentMTLQELTTFDRVFLDYLDRNDHDEDARDLYLTTMETHTTHLEVWNEPVPPCMK
Ga0256368_103700133300028125Sea-Ice BrineMTLQELTTFDRVFQNYLLEYEHDEDARDLYITTMQAHTTHLEVWNWIDDPKPPCMK
Ga0307488_1000782833300031519Sackhole BrineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMK
Ga0307488_10018937103300031519Sackhole BrineMTLQELTTFDRVFQNYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDSSDMT
Ga0307488_1030554813300031519Sackhole BrineMTLQELTTFDRVFQNYLSDNDHDEDARDLYIETMEAHTTHLEVWNDIFDFPTLKDYDEPVPPCMK
Ga0307488_1074545513300031519Sackhole BrineMTLQELTTFDRVFQNYLLEHDHDEDARDLYITTMEAHTIHLEVWNEPVPPCMK
Ga0302138_10001023103300031637MarineMTLQELTTFDRVFQNYLSDNDHDEDARDLYIETMEAHTTHLEVWNDIFDIPQLKDIND
Ga0348336_022764_368_5653300034375AqueousMTLQELTTFDRVFQSYLNDNDHDEDARDLYIETMEAHTTHLEVWNDIFDYPTLKDYDEPVPPCMK


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