NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F094903

Metagenome Family F094903

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F094903
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 69 residues
Representative Sequence MLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Number of Associated Samples 83
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 16.35 %
% of genes near scaffold ends (potentially truncated) 81.90 %
% of genes from short scaffolds (< 2000 bps) 91.43 %
Associated GOLD sequencing projects 80
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (60.952 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(39.048 % of family members)
Environment Ontology (ENVO) Unclassified
(37.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.952 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 60.32%    β-sheet: 0.00%    Coil/Unstructured: 39.68%
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Variant

51015202530354045505560MLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSISequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
39.0%61.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Freshwater Sediment
Iron-Sulfur Acid Spring
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Peatlands Soil
Soil
Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
17.1%4.8%39.0%9.5%3.8%7.6%4.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1007545633300001356Peatlands SoilESAPGREHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLSALVSLHEAMRKRADDGDAAVKAALDELGLGTVSI*
JGI12269J14319_1011505323300001356Peatlands SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLSALVSLHEAMRKRADDGDAAVKAALDELGLGTVSI*
Ga0062389_10013389753300004092Bog Forest SoilYEDIMLRRVPAAVAHRFRGAAGARGFTHARYLTALGALHEAVRGRADDGDEAAAADLGRLGLGTVSI*
Ga0062595_10065243613300004479SoilGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI*
Ga0066684_1057310013300005179SoilSAGGREFEDIMLRRVPATVAHRFRGAAGARGFTHAQYLTALVTLHEAMRRRADEGDAEVAAVLDQLRLGTVSI*
Ga0066388_10208484513300005332Tropical Forest SoilMYWAAEGDSGGGREYEDIMLRRVPAAVASRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADVAAALQHLGLGTVSI*
Ga0066388_10360228113300005332Tropical Forest SoilVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADMAAALDQLGLGTVSI*
Ga0070761_1094537313300005591SoilVPAVVARRFRGAAGARGFTHAQFLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI*
Ga0070763_1015644833300005610SoilGQNVFWSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI*
Ga0066903_10739485713300005764Tropical Forest SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRQRADGGDAEVAAALHELGLGTVSI*
Ga0066903_10804906523300005764Tropical Forest SoilYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI*
Ga0066903_10810206913300005764Tropical Forest SoilYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHETMRKRADGGDADTAAALDQLGLGTVSI*
Ga0070717_1036881443300006028Corn, Switchgrass And Miscanthus RhizosphereVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI*
Ga0102924_120753523300007982Iron-Sulfur Acid SpringVWMHNPNLDPESRDFEDIMLRSVPHTVAYRFRGAAGARGLTHAQYLAALVRLHEVVREHADNGDTELAVVLQELGLGTVSI*
Ga0116224_1013809123300009683Peatlands SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLSALVSLHEAMRRRADEGDAEVAAALDELGLGTVSI*
Ga0126380_1198340623300010043Tropical Forest SoilGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI*
Ga0126373_1085930323300010048Tropical Forest SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDAEAAAALDQLGLNTVSI*
Ga0126373_1134865213300010048Tropical Forest SoilMFWATESEGGGGREHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRQRADGGDAEVAAALHELGLGTVSI*
Ga0126373_1282657623300010048Tropical Forest SoilGKNVVFWATESDSQEGRGPEDIMLRRVPATVAHRFRGAAGARGFTHARYLTALVALHEAMRERADSGDAEVAAVLGQLGLGTVAI*
Ga0126376_1197020413300010359Tropical Forest SoilMYWAAEGESGGGREYEDIMLRRVPAAVASRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADVAAAL
Ga0126378_1008826443300010361Tropical Forest SoilYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADMAAALDHLGLGTVSI*
Ga0126378_1100576223300010361Tropical Forest SoilGPLFSPPPGNRLVFWAAESDSPGGREYEDIMLRRVRGAVAHRFRGAAGARDFTHAQYLAALVALHEAMRQRADGGDAEVAAVLEQLGLGTVSI*
Ga0126378_1318589713300010361Tropical Forest SoilMYWAAEGDSGGGREYEDIMLRRVPAAVASRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADVAAALQQLGLGTVSI*
Ga0126378_1328334823300010361Tropical Forest SoilLKAGENVVFWAKESDSSAGREHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLAALVALHEAMRELADRSDGDVAAVLSQLGLGTVTI*
Ga0126379_1118628613300010366Tropical Forest SoilHRFRGAAGARRFTHAQYLTALVSLHEAMRKRADEGDADMAAALDQLGLGTVSI*
Ga0134128_1249950413300010373Terrestrial SoilRVPAAVAHRFRGAAGARGFTHARYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0126381_10008465123300010376Tropical Forest SoilMLRRVPAGVAHRFRGAAGARGFTHAQYLAALVALHESMRQRADSGDAEVAAALDQLGLSTVSI*
Ga0126381_10064499823300010376Tropical Forest SoilMYWAAEGESGGGREYEDIMLRRVPAMVAYRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADVAAALQQLGLGTVSI*
Ga0126381_10099688813300010376Tropical Forest SoilVMYWAAEGDSGGGREYEDIMLRRVPAAVASRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADVAAALQHLGLGTVSI*
Ga0126381_10245587623300010376Tropical Forest SoilAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALDQLGLGTVSI*
Ga0126381_10421064213300010376Tropical Forest SoilESDSSGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI*
Ga0136449_10104543713300010379Peatlands SoilEHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLSALVSLHEAMRKRADDGDAAVKAALDELGLGTVSI*
Ga0126383_1023999243300010398Tropical Forest SoilPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADMAAALDQLGLGTVSI*
Ga0137384_1068456313300012357Vadose Zone SoilKVLIWRGAAESPDGNEFEDLMLWRTPSGLAHRFGGAAAARGLTPAQHLSALVTLHQTMRQRADGGDADIAAMLDQLGLNTVAI*
Ga0137407_1067961723300012930Vadose Zone SoilREFEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVTLHEAMRRRADEGDADVAAVLEQLGLGTVSI*
Ga0182041_1010495613300016294SoilDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0182033_1081422623300016319SoilVPAAVAHRFRGAAGARGFTHAQYLTALVSLHETMRKRADGGDADMAAALDQLGLGTVSI
Ga0182035_1205046613300016341SoilAAVAHRFRGAAGARGFTHGQYLTALVSLHEAMRKRADDGDAEVAAALDRLGLGTVSI
Ga0182032_1163582313300016357SoilREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADLAAALDQLGLGTVSI
Ga0182040_1160012713300016387SoilEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0182038_1033740113300016445SoilVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALAQLGLGTVSI
Ga0187814_1013554613300017932Freshwater SedimentDVFFWKAGEDGPPGREHEDIMLRRVPAGVAHRFRGAAGARGFTHAQYLAALVALHEAMRARADGGDTEVAAALDQLGLGTVSI
Ga0187783_1025292423300017970Tropical PeatlandDIMLRKVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADMAAALGQLGLGTVSI
Ga0187780_1030019823300017973Tropical PeatlandASVAHRFRGAAGARGFTHALYLTALVRLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0187815_1015618713300018001Freshwater SedimentEHEDIMLRRVPATVAHRFRGAAGARGFTHAQYLSALVSLHEAMRRRADDGDAEVKAALDELGLGTVSI
Ga0187766_1011529733300018058Tropical PeatlandMLRKVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMAAALDQLGLGTVSI
Ga0187766_1119995213300018058Tropical PeatlandEDIMLRRVPAAVAYRFRGAAGARGFTHAQYLSALVALHEEMRKRADTGNAEVAAVLDQLGLGTVSI
Ga0187766_1146535113300018058Tropical PeatlandFWAVESDSAGGREHEDIMLRRVPAAVAYRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADAAAALQQLGLGTVSI
Ga0187772_1001315443300018085Tropical PeatlandMYWAAEGDSGGGREYEDIMLRRVPAAVAYRFRGAAGARGFTHAQYLTALVSLHEAMRKRADQGDTDTAAALQQLGLGTVSI
Ga0187772_1023287113300018085Tropical PeatlandNFFYAAEAAEGDSPGSREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLAALVSLHEAMRKRADGGDTETAAALEQLGLGTVSI
Ga0187772_1053022113300018085Tropical PeatlandGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALDQLGLGTVSI
Ga0210399_1021580223300020581SoilMPDNETFHMLRRVPAAVAHRFRGAAGARGFTHAQFLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0210399_1022276513300020581SoilMYWAAEGDSGAGREHEDIMLRRVPAGVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADVAAALQQLGLGTVSI
Ga0210395_1071201023300020582SoilHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDTEMAAALNQLGLGTVSI
Ga0210401_1073192423300020583SoilWSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDTEMAAALNQLGLGTVSI
Ga0210401_1082081413300020583SoilRVPAAVAHRFRGAAGARGFTHAQFLTALVSLHEAMRKRADGGDAEMAAALDQLGLGTVSI
Ga0210385_1055557223300021402SoilDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDTEMAAALNQLGLGTVSI
Ga0210385_1097228223300021402SoilMVWRMPSLLAHRFRGAAGARGLTLAQHLSALISLHEAMRQRAESGDEQAATLLEQFSLGTVSI
Ga0210383_1172348923300021407SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0210391_1122866023300021433SoilESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0210390_1074929213300021474SoilWSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQFLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0210402_1072207023300021478SoilRVPAAIAHRFRGAAGARGLTHAQYLTALVSLHEAMRKRADEGDADVAAALQQLGLGTVSI
Ga0210410_1103460113300021479SoilSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDTEMAAALNQLGLGTVSI
Ga0126371_1240469913300021560Tropical Forest SoilPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVSI
Ga0126371_1263156023300021560Tropical Forest SoilPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLGTVST
Ga0207693_1023865723300025915Corn, Switchgrass And Miscanthus RhizosphereMYWAAEGDSGGGRENEDIMLRRVPAGVAHRFRGAAGARGFTHAQYLTALVSLHEVMRKRADEGDADVAAALQQLGLGTVSI
Ga0318538_1055674813300031546SoilRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALDQLGLGTVS
Ga0318528_1029521523300031561SoilVAHRFRGAAGARGFTHGQYLTALVSLHEAMRKRADEGDAEVAAALDQLGLGTVSI
Ga0318555_1068686313300031640SoilTVFYAAESDSGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0318574_1087485913300031680SoilAAESDSGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0318572_1076334023300031681SoilEYEDIMLRRVPAAVAHRFRGAAGARGFTHGQYLTALVSLHEAMRKRADEGDAEVAAALDQLGLGTVSI
Ga0307469_1188778713300031720Hardwood Forest SoilFGAAELDRAGGREFEDIMLRRVPAGVAHRFRGAAGARGFTHAQYLTALVTLHEAMRKRADEGDADVAAALEQLRLGTVSI
Ga0307468_10247559123300031740Hardwood Forest SoilSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVTLHEAMRKRADEGDADVAAALEQLRLGTVSI
Ga0318502_1032041713300031747SoilSGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI
Ga0318492_1024572133300031748SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALGQLGLGTVSI
Ga0318494_1007711833300031751SoilFYAVESESGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI
Ga0307475_1149725213300031754Hardwood Forest SoilGKNVMFWAAEGEGGGREHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDAEVAAALQELGLGTVSI
Ga0318537_1013653213300031763SoilMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI
Ga0318535_1051524723300031764SoilVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEVAAALDRLGLGTVSI
Ga0318546_1077367213300031771SoilLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0318543_1051564023300031777SoilNVFYALESDSGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALGQLGLGTVSI
Ga0318566_1046662523300031779SoilIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0318552_1055647623300031782SoilSGGGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0318503_1003101313300031794SoilVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADLTAALDQLGLGTVSI
Ga0318576_1016389113300031796SoilEDIMLRRVPAAVAHRFRGAAGARGFTHGQYLTALVSLHEAMRKRADEGDAEVAAALDQLGLGTVSI
Ga0318565_1047902323300031799SoilEHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEVAAALDRLGLGTVSI
Ga0318497_1084834623300031805SoilATVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADEGDADLAAALDQLGLGTVSI
Ga0306925_1009353863300031890SoilSAAGREYEDIMLRRVPAAVAHRFRGAAGARGFTHGQYLTALVSLHEAMRKRADEGDAEVAAALDQLGLGTVSI
Ga0318551_1059628223300031896SoilVAHRFRGAAGARGFTHGQYLTALVSPHEAMRKRADEGDAEVAAALDQLGLGTVSI
Ga0306923_1019791023300031910SoilMPKAPGIAPGRGDIFWSAESESGGGREHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEVAAALDRLGLGTVSI
Ga0306923_1205349313300031910SoilGREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALGQLGLGTVSI
Ga0310910_1148756013300031946SoilVPAGVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALAQLGLGTVSI
Ga0310909_1091953323300031947SoilEYEDIMLRKVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALGQLGLGTVSI
Ga0306922_1154708523300032001SoilLPPDQNVFWSAGSERGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMA
Ga0318532_1011783413300032051SoilHEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEVAAALDRLGLGTVSI
Ga0318506_1008690813300032052SoilRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVS
Ga0318533_1107370123300032059SoilMLRRVPAAVAHRFLGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADLTAALDQLGLGTVSI
Ga0318514_1053800323300032066SoilVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALDQLGLGTVSI
Ga0318524_1052323313300032067SoilHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI
Ga0318525_1062649323300032089SoilMLRRVPAAVAHRVRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMTAALDQLGLGTVSI
Ga0318577_1059065823300032091SoilREYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHETMRKRADGGDADMAAALDQLGLGTVSI
Ga0311301_1132213913300032160Peatlands SoilLRRVPAAVAHRFRGAAGARGFTHAQYLSALVSLHEAMRKRADDGDAAVKAALDELGLGTVSI
Ga0307472_10028913233300032205Hardwood Forest SoilFWSAESESGGGRDYEDIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDAEMAAALDQLGLSTVSI
Ga0335072_1004730213300032898SoilAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADGGDADMAAALDQLGLGTVSI
Ga0310914_1138732023300033289SoilIMLRRVPAAVAHRFRGAAGARGFTHAQYLTALVSLHEAMRKRADDGDADMTAALDQLGLGTVSI


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