Metagenome / Metatranscriptome Family F094920

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094920
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	81 residues
Representative Sequence	SYPLMPAEEAQQTDSPPVNAYLLTMLLLACSFGASVLRMVLTNARRQGAICSWSGDDRRWLSVAYEDPSFLGVFRL
Number of Associated Samples	37
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	18.45 %
% of genes near scaffold ends (potentially truncated)	64.76 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.476 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (65.714 % of family members)
Environment Ontology (ENVO)	Unclassified (67.619 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.524 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 45.19% β-sheet: 0.00% Coil/Unstructured: 54.81%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF13473	Cupredoxin_1	10.48
PF07883	Cupin_2	3.81
PF02416	TatA_B_E	0.95
PF08734	GYD	0.95
PF11387	DUF2795	0.95
PF00132	Hexapep	0.95
PF05048	NosD	0.95
PF01566	Nramp	0.95
PF00127	Copper-bind	0.95
PF07366	SnoaL	0.95
PF07676	PD40	0.95
PF00144	Beta-lactamase	0.95
PF01872	RibD_C	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.95
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.95
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.95
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.95
COG1914	Mn2+ or Fe2+ transporter, NRAMP family	Inorganic ion transport and metabolism [P]	0.95
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.95
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.95
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.48 %
Unclassified	root	N/A	49.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.48 %
Unclassified	root	N/A	49.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.48 %
Unclassified	root	N/A	49.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	26.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	24.76 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.90 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	14.29 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.95 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	14.29 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	14.29 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	11.43 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	1.90 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	49.52 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	8.57 %
Rubrobacter tropicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	1.90 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1.90 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	0.95 %
Rubrobacter aplysinae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter aplysinae	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004081\|Ga0063454_100563089	Not Available	821	Open in IMG/M
3300005562\|Ga0058697_10095871	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300007790\|Ga0105679_10363462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1420	Open in IMG/M
3300009789\|Ga0126307_10123226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	2065	Open in IMG/M
3300009789\|Ga0126307_10274899	Not Available	1355	Open in IMG/M
3300009789\|Ga0126307_10388897	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300009789\|Ga0126307_10525857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	955	Open in IMG/M
3300009789\|Ga0126307_10875743	Not Available	725	Open in IMG/M
3300009789\|Ga0126307_11604635	Not Available	528	Open in IMG/M
3300009840\|Ga0126313_10075774	All Organisms → cellular organisms → Bacteria	2429	Open in IMG/M
3300009840\|Ga0126313_10225975	All Organisms → cellular organisms → Bacteria	1445	Open in IMG/M
3300009840\|Ga0126313_10280236	Not Available	1299	Open in IMG/M
3300009840\|Ga0126313_10799963	Not Available	767	Open in IMG/M
3300009840\|Ga0126313_11339105	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	592	Open in IMG/M
3300009840\|Ga0126313_11392740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	581	Open in IMG/M
3300009840\|Ga0126313_11410163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	577	Open in IMG/M
3300009840\|Ga0126313_11602392	Not Available	542	Open in IMG/M
3300010036\|Ga0126305_10005594	All Organisms → cellular organisms → Bacteria	6045	Open in IMG/M
3300010036\|Ga0126305_10375409	Not Available	934	Open in IMG/M
3300010036\|Ga0126305_10425295	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300010036\|Ga0126305_10582761	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300010036\|Ga0126305_11229961	Not Available	517	Open in IMG/M
3300010037\|Ga0126304_10003176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8253	Open in IMG/M
3300010037\|Ga0126304_10073257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300010037\|Ga0126304_10217656	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300010037\|Ga0126304_10219787	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300010037\|Ga0126304_10741200	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010037\|Ga0126304_10759689	Not Available	656	Open in IMG/M
3300010037\|Ga0126304_10818607	Not Available	632	Open in IMG/M
3300010037\|Ga0126304_10953890	Not Available	584	Open in IMG/M
3300010038\|Ga0126315_10140328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1423	Open in IMG/M
3300010038\|Ga0126315_10172820	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300010038\|Ga0126315_10683922	Not Available	668	Open in IMG/M
3300010039\|Ga0126309_10060246	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1846	Open in IMG/M
3300010039\|Ga0126309_10351622	Not Available	867	Open in IMG/M
3300010039\|Ga0126309_10751465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	631	Open in IMG/M
3300010040\|Ga0126308_10186740	All Organisms → cellular organisms → Bacteria	1327	Open in IMG/M
3300010040\|Ga0126308_10302972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1051	Open in IMG/M
3300010040\|Ga0126308_10328048	Not Available	1010	Open in IMG/M
3300010040\|Ga0126308_10428100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	886	Open in IMG/M
3300010040\|Ga0126308_10685762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	703	Open in IMG/M
3300010040\|Ga0126308_10725703	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300010041\|Ga0126312_10060311	All Organisms → cellular organisms → Bacteria	2548	Open in IMG/M
3300010041\|Ga0126312_10076314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	2265	Open in IMG/M
3300010041\|Ga0126312_10475461	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	893	Open in IMG/M
3300010041\|Ga0126312_10649006	Not Available	760	Open in IMG/M
3300010041\|Ga0126312_11315956	Not Available	535	Open in IMG/M
3300010041\|Ga0126312_11340419	Not Available	530	Open in IMG/M
3300010042\|Ga0126314_10048709	All Organisms → cellular organisms → Bacteria	2743	Open in IMG/M
3300010042\|Ga0126314_10357131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1049	Open in IMG/M
3300010042\|Ga0126314_10379649	Not Available	1016	Open in IMG/M
3300010042\|Ga0126314_10438518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	944	Open in IMG/M
3300010042\|Ga0126314_10574180	Not Available	822	Open in IMG/M
3300010042\|Ga0126314_10609840	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	797	Open in IMG/M
3300010042\|Ga0126314_10754366	Not Available	715	Open in IMG/M
3300010042\|Ga0126314_10881114	Not Available	661	Open in IMG/M
3300010042\|Ga0126314_11372027	Not Available	531	Open in IMG/M
3300010044\|Ga0126310_11013400	Not Available	655	Open in IMG/M
3300010044\|Ga0126310_11375854	Not Available	574	Open in IMG/M
3300010044\|Ga0126310_11430684	Not Available	564	Open in IMG/M
3300010044\|Ga0126310_11785257	Not Available	513	Open in IMG/M
3300010044\|Ga0126310_11802171	Not Available	510	Open in IMG/M
3300010045\|Ga0126311_10189134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1494	Open in IMG/M
3300010045\|Ga0126311_10277516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter aplysinae	1253	Open in IMG/M
3300010045\|Ga0126311_10464926	All Organisms → cellular organisms → Bacteria	984	Open in IMG/M
3300010045\|Ga0126311_10698526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	811	Open in IMG/M
3300010045\|Ga0126311_11144424	Not Available	642	Open in IMG/M
3300010045\|Ga0126311_11259035	Not Available	613	Open in IMG/M
3300010045\|Ga0126311_11458148	Not Available	572	Open in IMG/M
3300010045\|Ga0126311_11900583	Not Available	506	Open in IMG/M
3300010166\|Ga0126306_10472656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	988	Open in IMG/M
3300011332\|Ga0126317_10898227	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300014487\|Ga0182000_10627093	Not Available	522	Open in IMG/M
3300014488\|Ga0182001_10071999	Not Available	996	Open in IMG/M
3300014488\|Ga0182001_10241525	Not Available	691	Open in IMG/M
3300018432\|Ga0190275_13418823	Not Available	514	Open in IMG/M
3300018465\|Ga0190269_10354147	Not Available	885	Open in IMG/M
3300018466\|Ga0190268_10189318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300018466\|Ga0190268_10904200	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300018466\|Ga0190268_12394334	Not Available	501	Open in IMG/M
3300018469\|Ga0190270_11516865	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	720	Open in IMG/M
3300018469\|Ga0190270_11988485	Not Available	639	Open in IMG/M
3300018469\|Ga0190270_12271999	Not Available	603	Open in IMG/M
3300018476\|Ga0190274_11067805	Not Available	885	Open in IMG/M
3300028744\|Ga0307318_10276676	Not Available	587	Open in IMG/M
3300030496\|Ga0268240_10011412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter tropicus	1525	Open in IMG/M
3300030513\|Ga0268242_1031797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	937	Open in IMG/M
3300031548\|Ga0307408_101117670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	732	Open in IMG/M
3300031548\|Ga0307408_102314172	Not Available	520	Open in IMG/M
3300031731\|Ga0307405_11441339	Not Available	603	Open in IMG/M
3300031852\|Ga0307410_10255344	All Organisms → cellular organisms → Bacteria	1365	Open in IMG/M
3300031852\|Ga0307410_10806874	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300031852\|Ga0307410_12050903	Not Available	511	Open in IMG/M
3300031901\|Ga0307406_10453244	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300031901\|Ga0307406_11622920	Not Available	572	Open in IMG/M
3300031911\|Ga0307412_10736153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	850	Open in IMG/M
3300031911\|Ga0307412_11434078	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031995\|Ga0307409_100451985	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300032002\|Ga0307416_101733404	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300032004\|Ga0307414_10856889	Not Available	831	Open in IMG/M
3300032004\|Ga0307414_11576834	Not Available	612	Open in IMG/M
3300032005\|Ga0307411_11008759	Not Available	746	Open in IMG/M
3300032159\|Ga0268251_10467994	Not Available	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.81%
Host-Associated	Host-Associated	16.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.86%
Plants	Host-Associated → Plants	16.19%
Aquatic	Environmental → Aquatic	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.29%
Phylloplane	Host-Associated → Plants → Phylloplane	1.90%
Freshwater	Environmental → Aquatic → Freshwater	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.29%
Loam	Environmental → Terrestrial → Soil → Loam	1.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.95%
Sand	Environmental → Terrestrial → Soil → Sand	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	80.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.29%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.95%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.95%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	65.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300030513	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG (v2)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1185402171	3300002568	Soil	MAPAEEVQKTDRHPVNASLLTMLLLACSFGTSVLKVLITNARKQRAISSRSGDDRPWLALAYGEPSV
Ga0063454_1005630891	3300004081	Soil	MAPAEEVQKTDRHPVNASLLTMLLLACSFGTSVLRMLLTNARKQGAICSWSGDDRPWLALAYGELSVLEVFRL*
Ga0058697_100958712	3300005562	Agave	MPAEEAQQTYSPPVNAYLLTMLMLACSFGASVLRMLLINAWREGAICSWSGDDRAWMAVAHEDPSFLGVFRL*
Ga0105679_103634623	3300007790	Soil	LPDDGSYPLTPAEEVQKTDRHPVNAYLLTMLLLACSFGASVLRILLTNARKQGATCSWIGDDPRWLSVTYEEPSFLGVFRL*
Ga0126307_101232264	3300009789	Serpentine Soil	VEHVDRGANAPAPLPDGSYPLMPAEEAQQTDSPPVNAYLLTMLTLACSFGSSVLMMLLINAWREGAICSWIGDDRAWMAVAHEGPSFLGVFRL*
Ga0126307_102748992	3300009789	Serpentine Soil	MSAEEAQQTDSLPVNAHLLTMLMLACSFGVSVSRILLTNARGQGATCSWSGDDRAWLAVAYEDPSFLGVFRL*
Ga0126307_103888971	3300009789	Serpentine Soil	EEAQQTYSPPVNAYLLTMLTLACSFGVSVLMMLLINARRQGVTCSWIGDNRPWLAVAYEEPSFLGVFRL*
Ga0126307_105258572	3300009789	Serpentine Soil	GANVEHVDRGANAPAPLPNGSYPLMPAEEAQQTDSPPVNASLLTMLMLACSFGASVLRMLLTNARRQGAICSWSGDDRPWLDVAHEDPSFLGVFRL*
Ga0126307_108757432	3300009789	Serpentine Soil	MPAEEAQQTDSPPVNAYLLTMLLLACSFGASVLRMVLTNARRQGAICSWSGDDRRWLSVAYEDPSFLGVFRL*
Ga0126307_116046351	3300009789	Serpentine Soil	LPDESYLLTPAEEVRETDRLPGNAYLLTMLMLACSFGASVLRTLLTSAGRQGATCSWIGDDRAWLAVACE
Ga0126307_117059181	3300009789	Serpentine Soil	MPAEEAQQTDRLPVNASLLTMLMLACSFGASVLRKLLTNARRQGAICSWSGDDRP
Ga0126313_100757743	3300009840	Serpentine Soil	MPAEEAQETDSPPVNAYLLTMLMLACSFGASVLRMLLTNARRQGAICSWMGDDRRWLTVAHEDPSFLGVFRL*
Ga0126313_102259751	3300009840	Serpentine Soil	EHVDRGANAPAPLPDGSYPLTPAEEVQDAFTSPVNAYLLTMLLLACSFGASVLMLGTLLTNARRRGAICSWSGDDRPWLTGAYEDPSFLGVFRL*
Ga0126313_102802362	3300009840	Serpentine Soil	MPAEEAQQTNSLPVNAHLLTMLLLACSIGVSVLMKLLTNARREGAICSWSGDDLRWLTVAHEDPSFLGVFRL*
Ga0126313_107999631	3300009840	Serpentine Soil	LPDGSYPLTPAEEVQQTDRHPVNASLLTMLVLACSFGASVLRMVLTNTRKQGATCSWIGDDRRWLAVSYEEPSFLGVFRL*
Ga0126313_113391052	3300009840	Serpentine Soil	TPAEEAQQTDNNPVNAYLLTMLLLACSFEARVLRMLLIKARRQGTSCSSSGDDRSWLSMVYEEPSFLGVFRL*
Ga0126313_113927401	3300009840	Serpentine Soil	VQQTDRHPVNASLLTMLVLACSFGASILRMVLTNARKQGAICSWIGDDRRWLSVTYEEPSFLGVFRL*
Ga0126313_114101631	3300009840	Serpentine Soil	SPPVNAYLLTMLTLACSFGSSVLRMLLINAWREGAICSWIGDDRAWMAVAHEDPSFLGVFRL*
Ga0126313_116023922	3300009840	Serpentine Soil	LAGANVGHVDRGANAPAPLPNGSYPLTLAEELQQTDRHPVNAYLLTMLMLACSFGASVLRMVLTNARRQEAICSWIGDDRRWLSVTYEEPSFLGVFRL*
Ga0126305_100055941	3300010036	Serpentine Soil	QTYSPPVKAYLLTMLMLACSFGASVLMMLLTNARRQVAICSWSGDDHGWLSVAHEDPSLLGVFRL*
Ga0126305_103754091	3300010036	Serpentine Soil	MPAEEAQQTDSHPVNAYLLTMLVLACSFGASVLRMVLTNARRQGAICSWSGDDRGWLSVAYEDPSFLGVFRL*
Ga0126305_104252951	3300010036	Serpentine Soil	VNAHLLTMLLLACSFGASVLRMVLTNARRQGATCSWMGDDRRWLDVAYEEPSFLGVFRL*
Ga0126305_105827612	3300010036	Serpentine Soil	MPAEEAQQTYSPPVNAYLLTMLTLACSFGVSVLMMLLINARRQGVTCSWIGDNRPWLAVAYEEPSFLGVFRL*
Ga0126305_112299611	3300010036	Serpentine Soil	PHVSSALGGANVEHVDRGANAPAPLPDASYPLMPAEEAQQTYRPPVNAYLLTMLMLACSFGASVLRMLLINAWREGAICSWSGDDRPWLAVAHEDPSLLGVYRL*
Ga0126304_100031761	3300010037	Serpentine Soil	PHVSSALGGANVEHVDRGANAPAPLPGASYPLMPAEEAQQTDSPPVNAYLLTMLMLACSFGSSVLRMLLTNARRQGAICSCSGDDRGWLAVAHEDPSFLGVFRL*
Ga0126304_100732571	3300010037	Serpentine Soil	MPAEEAQETDRHPVNAYLLTVLVLGCSFGTSVLKMLLTNARRQGAICSWIGDDRRWVTVAYEDPSLLGVFRL*
Ga0126304_102176562	3300010037	Serpentine Soil	LLDGSYLLTLAEEAQESDRHPVNAYLLTMLLLVCSFGASVLRMLLTNARKQGAICSWSGDDGLWSAVAYGEPSFLGVFRL*
Ga0126304_102197871	3300010037	Serpentine Soil	RGADAPAPLPDASHLLTPAEEAQDMNGYPVNAYLLTMLLLACSFGARISRTLLTNAQRQGSTCSWSGYNLPWLTVAHEAPSFLGVFRL*
Ga0126304_107412001	3300010037	Serpentine Soil	NVGHVERGANAPAPLPNTSYPLTPAEEVQETDRPPANAHLLTMLLLACSFGASVLRMLLTNARRQGATCSWIDDNRPWLAVAYEEPSFLGVFRL*
Ga0126304_107596891	3300010037	Serpentine Soil	EHVDRGANAPAPLPDGSYPLMPAEEAQETNSLPVNAHLLTMLTLACSIGVSVLMKLLTNARREGAICSWSGDDLRWLTVAHEDPSFLGVFRL*
Ga0126304_108186071	3300010037	Serpentine Soil	PHVSSALGGANVEHVDRGANAPAPLPGASYPLMPAEEAQQTDSPPVNAYLLTMLLLACSFGASVLRMVLTNARRQGAICSWSGDDRRWLSVAYEDPSFLGVFRL*
Ga0126304_109538901	3300010037	Serpentine Soil	SYPLMPAEEAQQTYRPPVNAYLLTMLMLACSFGASVLRMLLINAWREGAICSWSGDDRPWLAVAHEDPSLLGVYRL*
Ga0126315_101403281	3300010038	Serpentine Soil	VEHVERGANAPAPLPDASYPLMPAEEAQQTDRPPVNAYLLTMLTLACSFGASVLMMLLINAWREGAICSWSGDDRPWLAVAHEDPSLLGVFRL*
Ga0126315_101728202	3300010038	Serpentine Soil	ANVEHVDSAANAPAPLPPDASYPLMPAEEAQEAYTSPVKAYLLTMLMLACSFGASVLRMLLTNARRQGAICSWMGDDRRWLTVAHEDPSFLGVFRL*
Ga0126315_106839221	3300010038	Serpentine Soil	MPAEEAQQTDRPPVNAYLLTVLVLVCSIGASVLKMLLTNARRQGAICSRSGDDRRWVTVAYEDPSLLGVFR
Ga0126309_100602463	3300010039	Serpentine Soil	LPDESYLLTPAEEVRETNRLLGNAYHLTMLLLACSFGASVLRTLLTSAGRQGATCAWIGDDRAWLAVACEDPSFLGVFRL*
Ga0126309_103516221	3300010039	Serpentine Soil	MPAEEAQEAYTSPVKAYLLTMLMLACSFGASVLRMLLTNARRQGVTCSWIDDNRRWLAVAYEEPSFLGVFRL*
Ga0126309_107514653	3300010039	Serpentine Soil	PSGSYPLMPAEEAQQTDSPPVKAYLLTMLMLACSFGASVLRMVLTNARRQGAICSWSGDDRAWVSVAHEDPSFLGVFRL*
Ga0126308_101867402	3300010040	Serpentine Soil	MPAEEAQQTYSPPVNAYLLTMLTLACSFGASVLMMLLINAWREGAICSWSGDDRAWMAVAHEDPSFLGVFRL*
Ga0126308_103029721	3300010040	Serpentine Soil	PLPGGSSPLTPPEEAQEMDSLPVNVYLLTMLVLACSFGASVLMMLLTNIRRQGAICSWSGHDRRWLYVAYKDPSFLGVFRL*
Ga0126308_103280481	3300010040	Serpentine Soil	AEEAQQTDSPPVNAYLLTMLMLACSFGASVLMMLLINAWREGAICSWIGDDRAWMAVAHEAPSFLGVYRL*
Ga0126308_104281002	3300010040	Serpentine Soil	VAGVPSALAGTNVGHVERGANAPAPLPNGSYPLTPAELVQETDRPPANAYLLTMLMLACSFGASPLRTLLTSARRQGAIRSWVDDDRWWLSVAYEEPSFLGVFRL*
Ga0126308_106857621	3300010040	Serpentine Soil	LPDESYLLTPAEEAQQTDRLPGNAYLLTMLMLACSFGASVLRTLLTSAGRQGATCSWIGDDRAWLAVACEEPSFLGVFRL*
Ga0126308_107257032	3300010040	Serpentine Soil	APAPLPDGSYPLMPAEEAQQTYSPPVNAYLLTMLTLACSFGVSVLMMLLINARRQGVTCSWIGDNRPWLAVAYEEPSFLGVFRL*
Ga0126312_100603112	3300010041	Serpentine Soil	LPDGSYPLTPAEEVQQTDRHPVNASLLTMLVLASSFEASILRMVLTNARKQGATCSWIGDDRRWLSVSYEEPSFLGVFRL*
Ga0126312_100763141	3300010041	Serpentine Soil	MPEGSYALTLPEEAQETDSPPVNAYLLTMLLLACSFGSSVLRMLLTNAWREGAICSCSGDDRRWLAVAHENRSFLGVFRL*
Ga0126312_104754611	3300010041	Serpentine Soil	MGHMDRGADAPAPLPDASYPLMPAEEAQQTDSPPVKASLLTMLMLACSFGASVLRMLLINAWREGAICSWSGDDRGWLTVAHEDPCVLGVYRL*
Ga0126312_106490061	3300010041	Serpentine Soil	LPNGSYPPTPAEEVQQTDRHPVNAHLLTILLLACSLGASLLRILLTNARRQGAICSWIGDDRGWLSVVHEEPSFLGVFRL*
Ga0126312_113159561	3300010041	Serpentine Soil	EEAQQTYSPPVNAYLLTMLTLACSFGVSVLRMLLTNAWREGTICSWIGDDRGWVDVAHEDPSFLGVFRL*
Ga0126312_113404191	3300010041	Serpentine Soil	LPGASYPLTLAEKAQQTNSLPVNAYLLTMLLLACSFGSSVLRKLLTNALRQGAICSWMGDDRRWLTVAHEDPSFLGVF
Ga0126314_100487093	3300010042	Serpentine Soil	MPAEEAQQTYSPPVNAYLLTMLTLACSIGVSVLMMLLINARRQGVTCSWMGDDRRWLSVAYEEPSFLGVFRL*
Ga0126314_103571312	3300010042	Serpentine Soil	QTDRPPVKAYLLTMLMLACSFGASVLRMLLTNALRQGAICSWIGDDRPWLTVAHEEPSFLGVFRL*
Ga0126314_103796491	3300010042	Serpentine Soil	MPAEEAQQTDRPPVKAYLLTMLMLACSFGASVLRMLLTNALRQGAICSWIGDDRRWLSVAHEEPSFLGVFRL*
Ga0126314_104385181	3300010042	Serpentine Soil	EEVRETNSLPGNAYLLTMLVLACSFGASVLRTLLSSAGRQGATCSWIGDDRAWLAVACEEPSFLGVFRL*
Ga0126314_105741801	3300010042	Serpentine Soil	MPAEEAQQTYSPPVNAYLLTMLTLACSFGVSVLMMLLINAWREGAICSSWIGDDRAWMAVAHEEPSFLGVFRL*
Ga0126314_106098401	3300010042	Serpentine Soil	VPSALAGANVEHVERAANPPAPLPGGSYPLMPGEEAQQTDSPPVNASLLTMLMLACSFGASVLRMLLTNAWREGAICSWSGDDRSWLAVAHEDPSFLGVFRL*
Ga0126314_107543662	3300010042	Serpentine Soil	MPAEEAQQTDRPPVNAYLLTMLTLACSFGASVLMMLLINAWREGAICSWSGDDRPWLAVAHEDPSFLGVFRL*
Ga0126314_108811142	3300010042	Serpentine Soil	LPNGSYPLTPAEEVQQTDGHPVNAHLLTMLMLACSLGASLLRILLTNARRHGAICSSWIGDDRGWLSVVHEEPAFLGVFRL*
Ga0126314_113720271	3300010042	Serpentine Soil	GGANVEHVDRGANAPAPLPDASYPLMPAEEAQQTDSPPVNAYLLTMLTLACSFGASVLRMVLINAWREGAICSWSGDDRAWMAVAHEDPSFLGVFRL*
Ga0126310_110134002	3300010044	Serpentine Soil	MPAEEAQQTDSPPVNASLLTMLLLACSFGASVLRMVLTNARRQGAICSWSGDDRRWLSVAYEDPSFLGVFRL*
Ga0126310_113758542	3300010044	Serpentine Soil	LPDASYPLTLAGELQQTDMPPVNAHLLTMLMLACSFGASVLRMVLTNARSQGATCSWIGDDRGWLDVAYEEPSFLGVFRL*
Ga0126310_114306842	3300010044	Serpentine Soil	PAEEAQDMNGYPVNAYLLTMLLLACSFGARISRTLLTNAQRQGSTCSWSGYNLPWLTVAHEAPSFLGVFRL*
Ga0126310_117852571	3300010044	Serpentine Soil	MGHMERGADAPAPLPDASYPLTPAEEAQQTYEHPVNAYLLTMLLLACSSGASVLRMLLTNARRQGATCSWSGDDRPWLTVAHEAPSFLGVFRL*
Ga0126310_118021711	3300010044	Serpentine Soil	MPAEAQETDSAPVNASLLTMLMLACSLGASVMRILLTNARRQGAIFSSLIGDDRGWLAVVHEDPSFLGV
Ga0126311_101891344	3300010045	Serpentine Soil	PLPDGSYPLMPAEEAQQTYSPPVNAYLLTMLTLACSFGSSVLRMLLINAWREGAICSWIGDDRAWMAVAHEDPSFLGVFRL*
Ga0126311_102775162	3300010045	Serpentine Soil	LPNGSYPLTPAEELQRTDRHPVNAYLLTMLLLACLFGASVLRMLLTNARRQEAISSWIGDDRWWLSVAYENPSFLGVFRL*
Ga0126311_104649262	3300010045	Serpentine Soil	VEHVERGANAPAPLPDASYPLMPAEEAQQTDSPPVKASLLTMLTLACSFGASVLRMVLTNARRQGATCSWSGDDRA
Ga0126311_106985261	3300010045	Serpentine Soil	APLPDGSYPLTPAEEVQQTDRHPVNAYLLTMLVLACSFGASILRMVLTNARRQGAICSWIGDDRRWLSVSYENPSFLGVFRL*
Ga0126311_111444242	3300010045	Serpentine Soil	PAPLPDASYPLMPAEEAQQTYSPPVNAYLLTMLMLACSFGASVLRMLLINAWREGAICSWSGDDRPWLAVAHEDPSFLGVYRL*
Ga0126311_112590352	3300010045	Serpentine Soil	VSSALAGANVEHVDRAANAPAPLPNGSYPLMPAEEAQQTDRLPVNAHLLTMLMLACSLGASVLRMLLTNARRQSAICSWSGDDRRWLSVAHEEPSFLGVFRL*
Ga0126311_114581481	3300010045	Serpentine Soil	MDSLPVNVYLLTMLVLACSFGASVLMMLLTNIRRQGAICSWSGHDRRWLYVAYEDPSFLGVFRL*
Ga0126311_119005831	3300010045	Serpentine Soil	SYPLMPAEEAQQTDSPPVNAYLLTMLLLACSFGASVLRMVLTNARRQGAICSWSGDDRRWLSVAYEDPSFLGVFRL*
Ga0126306_104726562	3300010166	Serpentine Soil	GGANVEHVDRGANAPAPLPDGSYPLMPAEEAQQTDSPPVKAYLLTMLMLACSFGASVLMMLLINAWREGAICSWIGDDRAWMAVAHEGPSFLGVFRL*
Ga0126317_108982272	3300011332	Soil	LTPAEEVKLTDRHPVNAHLLTMLLLACSFGASVLRMVLTNARRQGVTCSWIGDDRPWLAVAYEEPSFLGVFRL*
Ga0182000_106270931	3300014487	Soil	NVEHVDRAANAPAPLPDRSYPLMLAEEAQQTDSPPVNAYLLTMVVLCLSFGTSVLMMLLTDARREGTICSRMGEDGGWLAVAHEDPSFLGVFRL*
Ga0182001_100719992	3300014488	Soil	AEAAQEMDGGPLAPLPDGSYPPTLAEEVQETDSPPVNASLLTMLVLCFSFGASVLRMLLTNARRQGAICSSSGDDRRWLSVAYEDPSFLGVLRL*
Ga0182001_102415252	3300014488	Soil	MPAEAQETDSAPVNASLLTMLMLACSFGASVLRMLLTNARRQGATCSWIGDDRGWLTVAHEDPSLLGVFRL
Ga0190275_134188232	3300018432	Soil	NAPAPLLDASYPLRLAEEAQQTDRHPVNAYLMTMLMLACCFGASVLRMVLTNARRQGAICSWIGDDRGWLAVAHEDPSLLGVFRL
Ga0190269_103541472	3300018465	Soil	VEHVHRAANAPAPLPEGSYPLTLAEEAQETDSPPVNAYLLTMLLLACSFGSSVLRMLRTNAQREGAICSWCGDDGGWLAVAHEEPSLLGVFRL
Ga0190268_101893181	3300018466	Soil	LPDESYLLTPPEEVREMDRLPGNAYLLTMLMLACSFGASVLRTLLTSAGRQGATCSWIGDDRAWLAVACEEPSVL
Ga0190268_109042001	3300018466	Soil	DRAANAPAPLPDRSYPLRLAEETQETDRDPVNAYLLTMLVLACSFGASVLMMVLTDARRQGAIYSWMGDDRGWLTVAFEEPSLLGVFRL
Ga0190268_123943341	3300018466	Soil	APHASSALGGANVEHVDRGANAPAPLPNGSYPLMPAEEAQQTDRPPVKAYLLTMLVLACSFGSSVLRMLLIITRRQGAICSCSGDDRRWVTVAHEDPSFLGVFRL
Ga0190270_115168652	3300018469	Soil	PAEEVRETNRLPGNAYLLTMLLLACSFGASVLRTLLTSAGRQGATCSWIGDDRAWLAVACEEPSFLGVFRL
Ga0190270_119884853	3300018469	Soil	PAPLPDESYPLMPAEEAQETDRPPVNASLLTMLVLACSFGASVLRMLLTNARKQGAICFWSGDDRPWLAVAHEEPSLLGVFRL
Ga0190270_122719992	3300018469	Soil	PLPNGSYPLMPAEEAQETDSPPVNASLLTMLMLACSFGASILRMLLTNARSTRRPGAICSWCGDDRPWLAVAHEEPSLLGVFRL
Ga0190274_110678054	3300018476	Soil	PAEEVQEADRDPVNAYLLTMLVLACSFGASILMMALTNARRQGVICSWIGDDRGWLAVTHDEPSLLGVFRL
Ga0307318_102766761	3300028744	Soil	ANAPAPLPDESYPLMPAEEAQDTDSPPVNAYLLTMLMLACSLGASVLRMLLTNARRQGAICSWSGDDRPWLTVAHEDPSFLGVFRL
Ga0268240_100114121	3300030496	Soil	LPEGSYTLTPAEEAQETDSPPVNSYLLTMLLLACSFGSSVLRMLLTNARREGAICSCRGDDRPWLAVAHEEPSLLEVFRL
Ga0268242_10317972	3300030513	Soil	AAQEMDGGPLAPLPDGSYPPTLAEEVQETDSPPVNASLLTMLVLCFSFGASVLRMLLTNARRQGAICSSSGDDRRWLSVAYEDPSFLGVLRL
Ga0307408_1011176701	3300031548	Rhizosphere	ESYLLTPAEEVRETNSLPGNAYLLTMLVLACSFGASVLRTLLTSAGRQGATCSWIGDDRAWLAVACEEPSFLGVFRL
Ga0307408_1023141721	3300031548	Rhizosphere	PLPNGSYPLTPAEEVQETDRHPANAYLLTMLLLACSFGASVLRMLLTNARRQGVTCSWIDDNRGWLAVAYEEPSFLGVFRL
Ga0307405_114413391	3300031731	Rhizosphere	ALAGANVGHVDREAGTSAPLPDESYLLTPAEEVRETNSLPGNAYLLTMLVLACSFGASVLRTLLSSAGRQGATCSWIGDDRAWLAVACEEPSFLGVLRL
Ga0307410_102553441	3300031852	Rhizosphere	MPAQEAQQTYSSPVNAYLLTMLTLACSIGASVLMMLLINARRQGVTCSWIGDDRRWLAVAYEEPSFLGVFRL
Ga0307410_108068741	3300031852	Rhizosphere	DMNPANAYLLTMLMLACSFGASVLRMLLTNARRQGVTCSWIDDDRPWLAVAYEEPSFLGVFRL
Ga0307410_120509031	3300031852	Rhizosphere	ANAPTPLLDASYPLTLAEEAQQTDSTPVNSHLLTMLVLAWCFGSSVLRMVLTNARRRGAICSWIGDDRGWLAVAHEDPSLLGVFRL
Ga0307406_104532442	3300031901	Rhizosphere	HVDRAANAPGPLGDASYPLMPAEEAQETDRPPVNAYLLTVLVLVCSFGASVLKMLRTNARRQGAICSRSGDDRRWLTVAYEDPSLLGVFRL
Ga0307406_116229202	3300031901	Rhizosphere	EEVQETDRHPANAHLLTMLLLACSFGASVLRMLLTNARRQGVTCSWIDDNRGWLAVAYEEPSFLGVFRL
Ga0307412_107361531	3300031911	Rhizosphere	AEEAQQTYSPPVNAYLLTMLTLACSFGVSVLRMLLINARRQGAICSWIGDDRGWVDVAHEDPSFLGVFRL
Ga0307412_114340781	3300031911	Rhizosphere	TPAEEVQETDRHPANAYLLTMLLLACSFGASVLRMLLTNARRQGVTCSWIDDNRGWLAVAYEEPSFLGVFRL
Ga0307409_1004519851	3300031995	Rhizosphere	TPLGEGSYALTPAEEPQETDSTPVNSYLLTMLVLACCFGASVLTMVLTNARRRGAICSWIGDDRGWLAVAHEEPSFLGVFRL
Ga0307416_1017334042	3300032002	Rhizosphere	VEHVDRGANAPAPLPDGSYPLMPAEEAQQTYSPPVNAYLLTMLTLACSFGVSVLMMLLINARRQGVTCSWIGDDRRWLSVAYEEPSFLGVFRL
Ga0307414_108568891	3300032004	Rhizosphere	VEHVDRAANAPAPLGDASYPLMPAEEAQETDRPPVNAYLLTVLVLVCSFGASVLKMLRTNARRQGAICSRSGDDRRWLTVAYEDPSLLGVFRL
Ga0307414_115768342	3300032004	Rhizosphere	PLPNGSFPLTPAEEIQETDRNPANAYLLTMLMLACSFGASVLRMLLTNARRQGVTCSWIDDDRPWLAVAYEEPSFLGVFRL
Ga0307411_110087591	3300032005	Rhizosphere	EAQETYSLPVNAHLLTMLVLACSIGVSVLMKLLTNARREGAICSWSGDDLRWLAVAHEDPPFLGVFRL
Ga0268251_104679941	3300032159	Agave	LGGANVEHVDRGANAPAPLPNGSYPLGPAEEAQETDSLPVNASLLTMLMLACFFGASVLRMLLTNARRQGAICSWCGDDRPWLAVAHEDPSSLGVFRI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F094920

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences