NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F095016

Metagenome / Metatranscriptome Family F095016

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095016
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 51 residues
Representative Sequence VPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHRSKLD
Number of Associated Samples 86
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 96.94 %
% of genes near scaffold ends (potentially truncated) 92.38 %
% of genes from short scaffolds (< 2000 bps) 82.86 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (93.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(39.048 % of family members)
Environment Ontology (ENVO) Unclassified
(41.905 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(44.762 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 48.75%    β-sheet: 0.00%    Coil/Unstructured: 51.25%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF03918CcmH 80.00
PF16327CcmF_C 14.29
PF03100CcmE 1.90
PF01578Cytochrom_C_asm 1.90

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG3088Cytochrome c-type biogenesis protein CcmH/NrfFPosttranslational modification, protein turnover, chaperones [O] 80.00
COG2332Cytochrome c biogenesis protein CcmEPosttranslational modification, protein turnover, chaperones [O] 1.90

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.33 %
UnclassifiedrootN/A6.67 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000955|JGI1027J12803_109499374All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1047Open in IMG/M
3300001593|JGI12635J15846_10063754All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2751Open in IMG/M
3300002906|JGI25614J43888_10024743All Organisms → cellular organisms → Bacteria → Acidobacteria1906Open in IMG/M
3300002906|JGI25614J43888_10058383All Organisms → cellular organisms → Bacteria → Acidobacteria1134Open in IMG/M
3300003219|JGI26341J46601_10111468All Organisms → cellular organisms → Bacteria → Acidobacteria789Open in IMG/M
3300005176|Ga0066679_10141723All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1498Open in IMG/M
3300005176|Ga0066679_10642183All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300005187|Ga0066675_10569573All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae850Open in IMG/M
3300005332|Ga0066388_107247785All Organisms → cellular organisms → Bacteria → Acidobacteria557Open in IMG/M
3300005447|Ga0066689_10094899All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1700Open in IMG/M
3300005537|Ga0070730_10226074All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1242Open in IMG/M
3300005538|Ga0070731_10933910All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium575Open in IMG/M
3300005764|Ga0066903_100218450All Organisms → cellular organisms → Bacteria → Acidobacteria2885Open in IMG/M
3300005764|Ga0066903_105978543All Organisms → cellular organisms → Bacteria → Acidobacteria638Open in IMG/M
3300006034|Ga0066656_10174255All Organisms → cellular organisms → Bacteria1358Open in IMG/M
3300006046|Ga0066652_102007125All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300006047|Ga0075024_100089655All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1336Open in IMG/M
3300006914|Ga0075436_100539466All Organisms → cellular organisms → Bacteria → Acidobacteria856Open in IMG/M
3300007076|Ga0075435_100048519All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia3412Open in IMG/M
3300007255|Ga0099791_10272817All Organisms → cellular organisms → Bacteria → Acidobacteria804Open in IMG/M
3300009012|Ga0066710_100595291All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1677Open in IMG/M
3300009038|Ga0099829_11800407All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300009089|Ga0099828_10260235All Organisms → cellular organisms → Bacteria → Acidobacteria1557Open in IMG/M
3300009090|Ga0099827_11983339All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300010336|Ga0134071_10493380All Organisms → cellular organisms → Bacteria → Acidobacteria632Open in IMG/M
3300010361|Ga0126378_12862920All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300010362|Ga0126377_12107346All Organisms → cellular organisms → Bacteria → Acidobacteria640Open in IMG/M
3300010398|Ga0126383_13607966All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
3300011120|Ga0150983_11199581All Organisms → cellular organisms → Bacteria → Acidobacteria866Open in IMG/M
3300011269|Ga0137392_11437153All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300011270|Ga0137391_10778767All Organisms → cellular organisms → Bacteria → Acidobacteria790Open in IMG/M
3300012096|Ga0137389_10251003All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1487Open in IMG/M
3300012189|Ga0137388_11900458All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300012202|Ga0137363_10027284All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3905Open in IMG/M
3300012202|Ga0137363_10763347All Organisms → cellular organisms → Bacteria → Acidobacteria820Open in IMG/M
3300012202|Ga0137363_11403893All Organisms → cellular organisms → Bacteria → Acidobacteria588Open in IMG/M
3300012203|Ga0137399_10084389All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2420Open in IMG/M
3300012203|Ga0137399_10166841All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1769Open in IMG/M
3300012205|Ga0137362_11386825All Organisms → cellular organisms → Bacteria → Acidobacteria589Open in IMG/M
3300012206|Ga0137380_10631791All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter934Open in IMG/M
3300012209|Ga0137379_11538282All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300012211|Ga0137377_11554033All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300012285|Ga0137370_10202985All Organisms → cellular organisms → Bacteria1163Open in IMG/M
3300012349|Ga0137387_10963132All Organisms → cellular organisms → Bacteria → Acidobacteria614Open in IMG/M
3300012361|Ga0137360_10935918All Organisms → cellular organisms → Bacteria → Acidobacteria747Open in IMG/M
3300012362|Ga0137361_11380625All Organisms → cellular organisms → Bacteria → Acidobacteria628Open in IMG/M
3300012363|Ga0137390_10549310All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1126Open in IMG/M
3300012363|Ga0137390_10630086All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1038Open in IMG/M
3300012363|Ga0137390_10882712All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae849Open in IMG/M
3300012363|Ga0137390_11673158All Organisms → cellular organisms → Bacteria → Acidobacteria572Open in IMG/M
3300012385|Ga0134023_1068971All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M
3300012404|Ga0134024_1018471All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300012405|Ga0134041_1192359All Organisms → cellular organisms → Bacteria930Open in IMG/M
3300012683|Ga0137398_10333131All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1025Open in IMG/M
3300012925|Ga0137419_11617773All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300012925|Ga0137419_11864268All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300012927|Ga0137416_10521127All Organisms → cellular organisms → Bacteria → Acidobacteria1026Open in IMG/M
3300012927|Ga0137416_11710609All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300012929|Ga0137404_10168171All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1837Open in IMG/M
3300012975|Ga0134110_10093509All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1211Open in IMG/M
3300015054|Ga0137420_1087266All Organisms → cellular organisms → Bacteria → Acidobacteria648Open in IMG/M
3300015264|Ga0137403_10276005All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1583Open in IMG/M
3300017823|Ga0187818_10016835All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3122Open in IMG/M
3300017943|Ga0187819_10850666All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300018468|Ga0066662_12732481All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300019789|Ga0137408_1133139All Organisms → cellular organisms → Bacteria1316Open in IMG/M
3300019789|Ga0137408_1450597All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2651Open in IMG/M
3300020170|Ga0179594_10015015All Organisms → cellular organisms → Bacteria2247Open in IMG/M
3300020581|Ga0210399_10130080All Organisms → cellular organisms → Bacteria → Acidobacteria2072Open in IMG/M
3300020581|Ga0210399_10551192All Organisms → cellular organisms → Bacteria956Open in IMG/M
3300020582|Ga0210395_11080540All Organisms → cellular organisms → Bacteria → Acidobacteria593Open in IMG/M
3300021046|Ga0215015_10464005All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1114Open in IMG/M
3300021046|Ga0215015_10763486All Organisms → cellular organisms → Bacteria → Acidobacteria667Open in IMG/M
3300021168|Ga0210406_10941920All Organisms → cellular organisms → Bacteria → Acidobacteria647Open in IMG/M
3300021178|Ga0210408_10052489All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3187Open in IMG/M
3300021474|Ga0210390_11160354All Organisms → cellular organisms → Bacteria → Acidobacteria625Open in IMG/M
3300021477|Ga0210398_10812513All Organisms → cellular organisms → Bacteria → Acidobacteria752Open in IMG/M
3300021477|Ga0210398_11259977All Organisms → cellular organisms → Bacteria → Acidobacteria582Open in IMG/M
3300022724|Ga0242665_10171245All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300025915|Ga0207693_10949981All Organisms → cellular organisms → Bacteria → Acidobacteria658Open in IMG/M
3300025916|Ga0207663_11295021All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300026304|Ga0209240_1113173All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae945Open in IMG/M
3300026538|Ga0209056_10271749All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1191Open in IMG/M
3300026540|Ga0209376_1033391All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3183Open in IMG/M
3300026557|Ga0179587_10665847All Organisms → cellular organisms → Bacteria → Acidobacteria685Open in IMG/M
3300027297|Ga0208241_1081796All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300027846|Ga0209180_10763423All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300027875|Ga0209283_10800096All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300028381|Ga0268264_10999815All Organisms → cellular organisms → Bacteria → Acidobacteria843Open in IMG/M
3300030693|Ga0302313_10267904All Organisms → cellular organisms → Bacteria → Acidobacteria683Open in IMG/M
3300030940|Ga0265740_1005972All Organisms → cellular organisms → Bacteria → Acidobacteria1000Open in IMG/M
3300031753|Ga0307477_10730558All Organisms → cellular organisms → Bacteria → Acidobacteria661Open in IMG/M
3300031754|Ga0307475_11153456All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300031947|Ga0310909_11516663All Organisms → cellular organisms → Bacteria → Acidobacteria533Open in IMG/M
3300031962|Ga0307479_12033451All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300032174|Ga0307470_11375534All Organisms → cellular organisms → Bacteria → Acidobacteria581Open in IMG/M
3300032205|Ga0307472_100368678All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1187Open in IMG/M
3300032515|Ga0348332_14286476All Organisms → cellular organisms → Bacteria → Acidobacteria646Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil39.05%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil8.57%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil8.57%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.76%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.86%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.86%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.90%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.90%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.95%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.95%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.95%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.95%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.95%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002906Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cmEnvironmentalOpen in IMG/M
3300003219Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006047Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013EnvironmentalOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012385Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012404Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012405Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027297Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300030693Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2EnvironmentalOpen in IMG/M
3300030940Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI1027J12803_10949937433300000955SoilLPVLATLQITSSDWAVFGACVALAAATVLVIFYIRPDASDLAPHRSKLDQL
JGI12635J15846_1006375413300001593Forest SoilMVPALYTVAIFQIASADWAVLGACMALAVATMLFIFYIQPDASDLAPHRTKLDQ
JGI25614J43888_1002474333300002906Grasslands SoilMAGAYLNLAAVLISSADGAVLGLCLALAVATLLFIFYIQPDASDLAPRRSKLDQLM
JGI25614J43888_1005838333300002906Grasslands SoilMAGAYLNLAAVLISSADGAVLGACLALAVATLLFIFYIQPDASDLAPRRSKLDQLM
JGI26341J46601_1011146833300003219Bog Forest SoilVPLPTLAASLVASTDWLALGACLALAVATLVFLFFIQADASDLAPHRTSLDQ
Ga0066679_1014172333300005176SoilMVLALLAFANFEIASADWAVLGACLALAVAVLLFIFYIQPDASDLAPHRTKLDQLL
Ga0066679_1064218333300005176SoilMAVVFLNLVAAFAISSADGAVLGACLALAVSTLLFIFYIQPDASDLAPHRSKLDQLME
Ga0066675_1056957333300005187SoilMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDASDLAPHRTRLDQ
Ga0066388_10724778513300005332Tropical Forest SoilLSGFLIAAAQITSSDWAVLGACAALAVATGLFIFYIRPDASDLAP
Ga0066689_1009489933300005447SoilMVLPVYTLAIFLIASADWAVLGACLALAVATLLFIFYIQPDASDLAPHRTKLDQLL
Ga0070730_1022607413300005537Surface SoilLSAALAAALLVDSLAASPQVTPADWGVLGACFALAAATGLFIFYIQPDASDLAPHRSRLDQLLERR
Ga0070731_1093391023300005538Surface SoilLSLALFANVLFVLTSSDGAVLGACLALAMATVLFIFYIQPDASDLAPHRTKLD
Ga0066903_10021845013300005764Tropical Forest SoilLVQLLLALFSTEIRPNDLAVLGACLALAAATGLFVFYIRPDASDLAPHRSKLDQL
Ga0066903_10597854323300005764Tropical Forest SoilLSGLELAAAQITSSEWAVLGACAALAAATGLFIFHIRPDASDLAPHRS
Ga0066656_1017425513300006034SoilMVLPVYTLAIFLIASADWAVLGACLALAVATLLFIFYIQPDASDLAPHRTKLDQ
Ga0066652_10200712513300006046SoilVPVLFSVASFEIASGDWAVLGACLALAAATLLFIFYIQPDAS
Ga0075024_10008965513300006047WatershedsMATLLNLSGVIVLGSSDWAVLGACLALAIVTLLFIFYIQPDASDLAPHRSKL
Ga0075436_10053946613300006914Populus RhizosphereLFCLLLATSQIASSDWAVLGACFALAAATGLFIFYIRPDASDLAPHRSKLD
Ga0075435_10004851913300007076Populus RhizosphereLLVSLLAAAQISSADWAVLGACFALAAATGLFIFYIRPDASDLAPHRSKLDQLL
Ga0099791_1027281713300007255Vadose Zone SoilMVPTLCAIAAVEIASGDWVILGACLALAVAVGLFIFYIQPDASDLA
Ga0066710_10059529113300009012Grasslands SoilVKLLPALVAFLITSADWAVVGACLTLAISTILFIFYIQPDASDLAPRRTKLDQL
Ga0099829_1180040723300009038Vadose Zone SoilVPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPH
Ga0099828_1026023533300009089Vadose Zone SoilVPAIYTLAIFEIASADWAILGACLALAVATMLFIFYLQPDASDLAPHRSKLDQLLER
Ga0099827_1198333923300009090Vadose Zone SoilVKLLPALVAFLITSADWAVVGACLTLAISTILFIFYIQPDASDLAPRRTKLDQ
Ga0134071_1049338013300010336Grasslands SoilMAPTLYILATLEIASGDLAILGACVALAIAVGLFIFYIQPDASDLAPH
Ga0126378_1286292023300010361Tropical Forest SoilMEAIPLVAILLNDSGNWAVLGACLMLAVAIALFIFYIQPDASDLAPHRTRLDQLLER
Ga0126377_1210734613300010362Tropical Forest SoilMAPAALAAQIPSGDWAVLGACFALAAATFLFIFYIRPDASDLAPHRSALDQLL
Ga0126383_1360796613300010398Tropical Forest SoilLVGFLIAAAQIASSDWAVLGACVALAAATGLFIFYIRPDPSDLAPHRS
Ga0150983_1119958113300011120Forest SoilLILTVGTPIAAFLITSVDWAVLGACLALAFATGLFIFYIQPDASDLAPHRSKLDQLLE
Ga0137392_1143715323300011269Vadose Zone SoilMVAAFYTLAIFVINSADWAMLGACLALAAATVLFIFYIQPDASDLAP
Ga0137391_1077876713300011270Vadose Zone SoilMVAALYTFAIFVINSADWAVLGACLALAAATVLFIFYIQPDASDLA
Ga0137389_1025100333300012096Vadose Zone SoilMVFALYTAALFLIASADWAVLGACLALAVATMLLIFYIQPDASDLA
Ga0137388_1190045813300012189Vadose Zone SoilMVPAINTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHRSKLDQ
Ga0137363_1002728453300012202Vadose Zone SoilMATAFSMLAALEIGSRDWAVLGACVALAAAVLLFIFYIQPDASDLAPHRTKLDQLL
Ga0137363_1076334713300012202Vadose Zone SoilMVAALYTLAIFLIASGDWAVLGACLALAVATMLFVVYIQRDASDLAPHRTKLD
Ga0137363_1140389323300012202Vadose Zone SoilMVLALYTLAIFLIASADWAVLGACLALAVATLLFIFYIQPDASDLAPHRTRLDQLL
Ga0137399_1008438913300012203Vadose Zone SoilLAAAFLISSADSAVLGACLALAIATLLFIFYIQPDASDLAPHRSKLDHLME
Ga0137399_1016684113300012203Vadose Zone SoilLVAPFLVFAIFVIASEDWAVLGACLALAVAAMLFIFYIQPDASDL
Ga0137362_1138682523300012205Vadose Zone SoilVPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHR
Ga0137380_1063179133300012206Vadose Zone SoilMVPALYTLAIFLIASGDWAVLGACLALAVATLLFIFYIQPDASDLAP
Ga0137379_1153828223300012209Vadose Zone SoilMMPALYTSALFVIGSGDWAVLGACLALAVAVMLFVFYIQPDASDL
Ga0137377_1155403313300012211Vadose Zone SoilMMVPALYSLAIFLIASGDWAVLGACLALAIATMLFIFYIQPDASDLAPH
Ga0137370_1020298513300012285Vadose Zone SoilVTVLLTFASFEIASADWAVLGACLALAAATLLFIFYIQPDASDLAPHRTRLDQL
Ga0137387_1096313223300012349Vadose Zone SoilMAIFLIASADWAVLGACLALAVAVVLFIFYIQPDASDLAPHRTK
Ga0137360_1093591823300012361Vadose Zone SoilMVPTLYTLATLEIGSGDWAILGACLALAVAVGLFIFYIQPDASDLAPHRTKLDQLL
Ga0137361_1138062513300012362Vadose Zone SoilMAVVFLNLVAAFAISSADGAVLGACLALAVSTLLFIFYIQPDASDLAPHRSKL
Ga0137390_1054931033300012363Vadose Zone SoilMVPALYSLSIFLIASGDWAVLGACLALAVATMLFIFYIQPDASDLAP
Ga0137390_1063008633300012363Vadose Zone SoilVPALYTRANFEVASADWAVLVACLALAVATMLFIFYIQPDASDLAPHR
Ga0137390_1088271213300012363Vadose Zone SoilVPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAP
Ga0137390_1167315823300012363Vadose Zone SoilMVPAIYALAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAP
Ga0134023_106897113300012385Grasslands SoilMMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDASDLAPHRTR
Ga0134024_101847133300012404Grasslands SoilMMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDASDLAPHRTRLDQLLERR
Ga0134041_119235913300012405Grasslands SoilMMVPALYPLAIFLIASGDWAVLGACLALAIATMLFIFYIQPDASDLAPHR
Ga0137398_1033313133300012683Vadose Zone SoilMTVVFLNLFAAFTISSADGAVLGACLALAVSTLLFIFYIQPDASDLAPHRSKLDHLMERR
Ga0137413_1132914223300012924Vadose Zone SoilVAFFTLFAASVIASGDWVVLGACVALAVATMLFIFYIQPD
Ga0137419_1143263113300012925Vadose Zone SoilMVLYTLLAVSVIASGDWAVLGACVALAVATMLFIFYIQPDASDL
Ga0137419_1161777313300012925Vadose Zone SoilVVVAFLLFAMFVIASEDWAVLGACLALAVATMLFIFYIQPDASDLAPHRTKLDQL
Ga0137419_1186426823300012925Vadose Zone SoilMLPALYSLSIFLIASGDWAVLGACLALAVATMLFVFYIQPDASDLAPHRTKLDQLL
Ga0137416_1052112713300012927Vadose Zone SoilMVAALCSLAIYLIESADWAVLGACLALAVAVMLFIFYIQ
Ga0137416_1171060923300012927Vadose Zone SoilMAGVFLNLAAAFLLSSADGAVLGACLALAIATLLFIFYIQPDASDLAPHRSKLDQL
Ga0137404_1016817113300012929Vadose Zone SoilMLFAAGPDWAIYGACLGLAAAVFLFIFYIQPDASDLAPHRTKLDQLLE
Ga0134110_1009350913300012975Grasslands SoilMMVPALYPLAIFLIASGDWAVLGACLALAIATVLFIFYIQPDAS
Ga0137420_108726613300015054Vadose Zone SoilVPALYTVAIFLIASGDWAVLGACLALAVATMLFIFYIQPDASDLAPHRTKLSCA
Ga0137403_1027600533300015264Vadose Zone SoilMAATFSIFATFEIASGDWAILGACLALAVAVVLFLFHIQPDACDLA
Ga0187818_1001683513300017823Freshwater SedimentVALFSTLAALPLASSDWAVLGACLALAVATLVFIFYIQPDASDLA
Ga0187819_1085066623300017943Freshwater SedimentVALIFAQAALPLASSDWAVLGACLALAVATLVFIFYIQPDASDLAPHRT
Ga0066662_1273248123300018468Grasslands SoilVPTLCAIAAVEIASGDWAILGACLALAVAVGLFIFYIQPDASDLAPHRTR
Ga0137408_113313933300019789Vadose Zone SoilMLPLFHSLTMIEAASGDWAIVGACLALALAVGLFIFYIQPDASDLAPHRTKRDQ
Ga0137408_145059713300019789Vadose Zone SoilMLPLFHSLTMIEAASGDWAIVGACLALALAVGLFIFYIQPDASDLAPHRTKLDQ
Ga0179594_1001501533300020170Vadose Zone SoilMVPALLTFVTFETASADWAVLGACLALAVATLLFIFYIQPDASDLAPH
Ga0210399_1013008013300020581SoilVPAISALAMVEIASADWAILGACLALAVAVILFIFYIQPDASDL
Ga0210399_1055119233300020581SoilMLPLFLSLATIEIATRDGAILGACLALALAVGLFIFYIQPDASDLAPHRTKLDQ
Ga0210395_1108054023300020582SoilVTLFNVFAVLEIGSADWAVLGACLALAVATVLFIFYIQPDASDLAPHRTKL
Ga0215015_1046400533300021046SoilMAPPLAVSASFLLPSADWAVLGACLALAVATLLFIFYIHPDASDLASHRSKLD
Ga0215015_1076348623300021046SoilMAPLLHLFAAVILASADWAVLGACLALAIATLLFIFYINPDASDLAPHRSKLDQLLE
Ga0210406_1094192023300021168SoilMTCFFFFPLAATVITSADAAVLGACLALAISTLLFIFYIQPDASDLAPHRSKLDQLM
Ga0210408_1005248943300021178SoilVTLFYMFAVLEIGSADWAVLGACLALAVATMLFIFYIQPDASDLAPHRTKL
Ga0210390_1116035423300021474SoilLTVGTPIAAFLITSVDWAVLGACLALAFATGLFIFYIQPDASDLAPH
Ga0210398_1081251323300021477SoilLTIVTTTTVFLIASADWAVIGACLALAIATGLFIFYIQPDASDLAPHRSKLDQLLER
Ga0210398_1125997713300021477SoilLTATIATSIFLITSADWSVLGACMALALATGLFIFYIQPDASDLAPRRSKLDQLLER
Ga0242665_1017124523300022724SoilVTLATILAIVSIASADWAVLGACVALAVATMLFIFYIQPDASDLA
Ga0207684_1091080523300025910Corn, Switchgrass And Miscanthus RhizosphereVAIVLLFAVSVIASEDWVVLSACVALAVATMLFIFYIQPDASDL
Ga0207693_1094998123300025915Corn, Switchgrass And Miscanthus RhizosphereLIAVPVAVFLKIGSADGAVLGACLALAAATLLFIFYIQPDASDLAPRRSKLDQLM
Ga0207663_1129502113300025916Corn, Switchgrass And Miscanthus RhizosphereMALEIAVLMISSGDGAVLGACLALAAATILFIFYIQQDASDLAPHRSKLD
Ga0209240_111317333300026304Grasslands SoilMAGAYLNLAAVLISSADGAVLGACLALAVATLLFIFYIQPDASDLAPRRSKLDQ
Ga0209056_1027174933300026538SoilMVPALYLLAIFLIASGDWAVLGACLALAVATMLFVFYIQPDASDLAPHRTKLDQL
Ga0209376_103339113300026540SoilMVPALYPLAIFLIASGDWAVLGACLALAIATMLFIFYIQPDASDLAPHRTRLDQLLERR
Ga0179587_1066584723300026557Vadose Zone SoilMAVVFLNLVAASAISSTDGAVLGACLALAVATLLFIFYIQPDASDLAPHRSKLDQLM
Ga0208241_108179613300027297Forest SoilLTPVICIAVFLITSADWAVLGACLALALATGLFIFYIQPDASDLAPHRSKL
Ga0209180_1076342313300027846Vadose Zone SoilVPAIYTLAIFEIASADWAVLGACLALAVAVMLFIFYIQPDASDLAPHRSKLD
Ga0209283_1080009623300027875Vadose Zone SoilMAVVFLNLVAVFEISSADGAVLGACLALAVATLLFIFYIQPDASDLAPHRSKLDHL
Ga0268264_1099981523300028381Switchgrass RhizosphereLFCSLLATSQIVSSDWAVLGACFALAAATGLFIFYIRPDASDLAPHRS
Ga0302313_1026790423300030693PalsaMAPVPIVFAAFLEITSTDGAILGACLALAVATTLFIFYIQPDASDLAPRRSQLDQLLER
Ga0265740_100597213300030940SoilLTFVTATTVFLIASADWAVIGACLALAIATGLFIFYIQPDASDLAPHRSKLDQLLER
Ga0307469_1080794233300031720Hardwood Forest SoilVTFFLLFAVSVITSEDWVVLGACVALAVATMLFIFYIQPDASDL
Ga0307469_1114308623300031720Hardwood Forest SoilLTGFTIIATYLITSADWVVLGACLALALATGLFIFYIQPDASDLA
Ga0307469_1154718123300031720Hardwood Forest SoilVAFFTLFAASVIASGDWVVLGACAALAVATMLFIFYIQPDAS
Ga0307477_1073055823300031753Hardwood Forest SoilMAPAIHSLAIFEIGSADWAVLGACLALAVAVMLFIFYIQPDASDLA
Ga0307475_1115345623300031754Hardwood Forest SoilMVAALCSLAIFLIESADWAVLGACLALAVAVMLFIFYIQPD
Ga0310909_1151666323300031947SoilVAGTPAFAAMLAASGDWAVLGACLMLAAAVTLFIFYIQPDASDLAPHRTRLDQLLE
Ga0307479_1203345123300031962Hardwood Forest SoilMQTTLYTIAAIEIASGDWAILGACAALAIAALLFIFYIQPDASDLAPH
Ga0307470_1020108713300032174Hardwood Forest SoilMAVVVLNLVAAFLISSADGAVLGACLALAVATLLFIFYIQPDASDLAPHRS
Ga0307470_1137553423300032174Hardwood Forest SoilMPPLAFAAFLAVPAEWAIIGACLGLAAAVFLFIFYIQPDASDLAPHRTKLD
Ga0307472_10036867813300032205Hardwood Forest SoilMAMLLNLSGVIVLSSADWAVLGACLALAIVTLLFIFYIHPDASDLAPHRSKLDQL
Ga0348332_1428647613300032515Plant LitterLTVGTPIAAFLITSADWAVLGACLALAFATGLFIFYIQPDASDLAPHRSKLD

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.