Metagenome / Metatranscriptome Family F095124

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095124
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	58 residues
Representative Sequence	FPMVYHDLVRWIDERGYHAVAGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Number of Associated Samples	95
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.15 %
% of genes near scaffold ends (potentially truncated)	86.67 %
% of genes from short scaffolds (< 2000 bps)	77.14 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.190 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.238 % of family members)
Environment Ontology (ENVO)	Unclassified (34.286 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (54.286 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.79% β-sheet: 27.91% Coil/Unstructured: 59.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF02492	cobW	9.52
PF12029	DUF3516	7.62
PF00248	Aldo_ket_red	3.81
PF02733	Dak1	2.86
PF00294	PfkB	1.90
PF12399	BCA_ABC_TP_C	1.90
PF01980	TrmO	1.90
PF00406	ADK	1.90
PF13424	TPR_12	1.90
PF06197	DUF998	1.90
PF02585	PIG-L	0.95
PF00106	adh_short	0.95
PF13561	adh_short_C2	0.95
PF05368	NmrA	0.95
PF14833	NAD_binding_11	0.95
PF08281	Sigma70_r4_2	0.95
PF00903	Glyoxalase	0.95
PF06445	GyrI-like	0.95
PF00004	AAA	0.95
PF04672	Methyltransf_19	0.95
PF08241	Methyltransf_11	0.95
PF13240	zinc_ribbon_2	0.95
PF01327	Pep_deformylase	0.95
PF02657	SufE	0.95
PF01663	Phosphodiest	0.95
PF03313	SDH_alpha	0.95
PF14310	Fn3-like	0.95
PF01370	Epimerase	0.95
PF06262	Zincin_1	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2376	Dihydroxyacetone kinase	Carbohydrate transport and metabolism [G]	2.86
COG0563	Adenylate kinase or related kinase	Nucleotide transport and metabolism [F]	1.90
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	1.90
COG3371	Uncharacterized membrane protein	Function unknown [S]	1.90
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.95
COG1760	L-serine deaminase	Amino acid transport and metabolism [E]	0.95
COG2120	N-acetylglucosaminyl deacetylase, LmbE family	Carbohydrate transport and metabolism [G]	0.95
COG2166	Sulfur transfer protein SufE, Fe-S cluster assembly	Posttranslational modification, protein turnover, chaperones [O]	0.95
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
All Organisms	root	All Organisms	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
cellular organisms	root	All Organisms → cellular organisms	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	42.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.05 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.05 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	3.81 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.95 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3.81 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	2.86 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.90 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.90 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.95 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.95 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3.81 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2.86 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.90 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.90 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.95 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3.81 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.90 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.95 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.95 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.95 %
Longimycelium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium	0.95 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.90 %
Saccharopolyspora erythraea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora erythraea	0.95 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.95 %
Longimycelium tulufanense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	0.95 %
Micromonospora lupini	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini	0.95 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria bacterium 13_1_20CM_3_71_11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3.81 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.90 %
Micromonospora lupini str. Lupac 08	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini → Micromonospora lupini str. Lupac 08	0.95 %
Saccharopolyspora erythraea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora erythraea	0.95 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.95 %
Longimycelium tulufanense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	0.95 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.95 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.95 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_100116753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Longimycelium → Longimycelium tulufanense	1458	Open in IMG/M
3300004082\|Ga0062384_101244276	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300004091\|Ga0062387_100753926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	720	Open in IMG/M
3300004092\|Ga0062389_102723623	Not Available	659	Open in IMG/M
3300004635\|Ga0062388_100918353	Not Available	843	Open in IMG/M
3300005176\|Ga0066679_10171039	Not Available	1372	Open in IMG/M
3300005332\|Ga0066388_107561873	Not Available	545	Open in IMG/M
3300005537\|Ga0070730_10013239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6656	Open in IMG/M
3300005712\|Ga0070764_10826827	Not Available	577	Open in IMG/M
3300005952\|Ga0080026_10021515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1575	Open in IMG/M
3300006806\|Ga0079220_10391838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	903	Open in IMG/M
3300010341\|Ga0074045_10988381	Not Available	530	Open in IMG/M
3300010366\|Ga0126379_13136351	Not Available	553	Open in IMG/M
3300010371\|Ga0134125_11807780	Not Available	664	Open in IMG/M
3300010379\|Ga0136449_103850787	Not Available	564	Open in IMG/M
3300010398\|Ga0126383_11567202	Not Available	748	Open in IMG/M
3300011120\|Ga0150983_12315483	Not Available	575	Open in IMG/M
3300012211\|Ga0137377_10166037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2118	Open in IMG/M
3300012961\|Ga0164302_11301895	Not Available	587	Open in IMG/M
3300014169\|Ga0181531_10179794	Not Available	1283	Open in IMG/M
3300016357\|Ga0182032_11122111	Not Available	675	Open in IMG/M
3300016371\|Ga0182034_10624689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	911	Open in IMG/M
3300016387\|Ga0182040_10960429	All Organisms → cellular organisms → Bacteria → Terrabacteria group	711	Open in IMG/M
3300017926\|Ga0187807_1019691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2081	Open in IMG/M
3300017932\|Ga0187814_10007396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4374	Open in IMG/M
3300017936\|Ga0187821_10497151	Not Available	509	Open in IMG/M
3300018001\|Ga0187815_10464904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	541	Open in IMG/M
3300018060\|Ga0187765_10735027	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	652	Open in IMG/M
3300018086\|Ga0187769_11350433	Not Available	539	Open in IMG/M
3300020150\|Ga0187768_1036097	Not Available	1084	Open in IMG/M
3300020583\|Ga0210401_10996715	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	696	Open in IMG/M
3300021180\|Ga0210396_10060821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3447	Open in IMG/M
3300021180\|Ga0210396_11248125	Not Available	620	Open in IMG/M
3300021401\|Ga0210393_11195202	Not Available	612	Open in IMG/M
3300021406\|Ga0210386_10462681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1095	Open in IMG/M
3300021406\|Ga0210386_10824433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	796	Open in IMG/M
3300021474\|Ga0210390_10226425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	1582	Open in IMG/M
3300021474\|Ga0210390_10454617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1080	Open in IMG/M
3300021477\|Ga0210398_10036183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4111	Open in IMG/M
3300021477\|Ga0210398_10071343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	2825	Open in IMG/M
3300021560\|Ga0126371_11719589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	751	Open in IMG/M
3300022529\|Ga0242668_1011538	Not Available	1200	Open in IMG/M
3300024288\|Ga0179589_10488333	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	570	Open in IMG/M
3300027080\|Ga0208237_1048393	Not Available	634	Open in IMG/M
3300027625\|Ga0208044_1145243	Not Available	661	Open in IMG/M
3300027684\|Ga0209626_1083171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	821	Open in IMG/M
3300027701\|Ga0209447_10117372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	731	Open in IMG/M
3300027767\|Ga0209655_10010673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_71_11	3110	Open in IMG/M
3300027842\|Ga0209580_10529821	Not Available	586	Open in IMG/M
3300027857\|Ga0209166_10569254	Not Available	578	Open in IMG/M
3300028775\|Ga0302231_10038799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2026	Open in IMG/M
3300028806\|Ga0302221_10225676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	819	Open in IMG/M
3300028877\|Ga0302235_10066739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1689	Open in IMG/M
3300029910\|Ga0311369_10668361	Not Available	857	Open in IMG/M
3300029944\|Ga0311352_10135739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2139	Open in IMG/M
3300030007\|Ga0311338_10205015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2268	Open in IMG/M
3300030053\|Ga0302177_10041433	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2832	Open in IMG/M
3300030677\|Ga0302317_10221408	Not Available	864	Open in IMG/M
3300030730\|Ga0307482_1138936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	700	Open in IMG/M
3300031233\|Ga0302307_10045748	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	2352	Open in IMG/M
3300031236\|Ga0302324_100010759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18880	Open in IMG/M
3300031543\|Ga0318516_10027459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2974	Open in IMG/M
3300031544\|Ga0318534_10279874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	961	Open in IMG/M
3300031561\|Ga0318528_10179032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1133	Open in IMG/M
3300031679\|Ga0318561_10763763	Not Available	531	Open in IMG/M
3300031708\|Ga0310686_107670786	Not Available	1395	Open in IMG/M
3300031723\|Ga0318493_10427951	Not Available	726	Open in IMG/M
3300031748\|Ga0318492_10744308	Not Available	526	Open in IMG/M
3300031754\|Ga0307475_11432054	Not Available	532	Open in IMG/M
3300031770\|Ga0318521_10162002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora → Saccharopolyspora erythraea	1276	Open in IMG/M
3300031771\|Ga0318546_10472583	Not Available	879	Open in IMG/M
3300031771\|Ga0318546_10803606	Not Available	662	Open in IMG/M
3300031781\|Ga0318547_11085918	Not Available	501	Open in IMG/M
3300031796\|Ga0318576_10343154	Not Available	706	Open in IMG/M
3300031833\|Ga0310917_11043334	Not Available	547	Open in IMG/M
3300031910\|Ga0306923_10990678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	914	Open in IMG/M
3300031910\|Ga0306923_11835556	Not Available	621	Open in IMG/M
3300031912\|Ga0306921_11131154	Not Available	876	Open in IMG/M
3300031945\|Ga0310913_10093091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2028	Open in IMG/M
3300031954\|Ga0306926_12319097	Not Available	594	Open in IMG/M
3300032001\|Ga0306922_11599232	Not Available	648	Open in IMG/M
3300032010\|Ga0318569_10380567	Not Available	658	Open in IMG/M
3300032042\|Ga0318545_10357314	Not Available	526	Open in IMG/M
3300032059\|Ga0318533_11308560	Not Available	530	Open in IMG/M
3300032067\|Ga0318524_10075226	Not Available	1645	Open in IMG/M
3300032067\|Ga0318524_10709625	Not Available	531	Open in IMG/M
3300032076\|Ga0306924_11777109	Not Available	643	Open in IMG/M
3300032091\|Ga0318577_10223707	All Organisms → cellular organisms → Bacteria → Terrabacteria group	901	Open in IMG/M
3300032261\|Ga0306920_101664849	All Organisms → cellular organisms → Bacteria → Terrabacteria group	905	Open in IMG/M
3300032783\|Ga0335079_12183573	Not Available	529	Open in IMG/M
3300032892\|Ga0335081_10756542	Not Available	1168	Open in IMG/M
3300032895\|Ga0335074_10605780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora lupini → Micromonospora lupini str. Lupac 08	1091	Open in IMG/M
3300032895\|Ga0335074_10656644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1026	Open in IMG/M
3300032955\|Ga0335076_11733967	Not Available	513	Open in IMG/M
3300033134\|Ga0335073_10293509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1955	Open in IMG/M
3300033289\|Ga0310914_11881268	Not Available	503	Open in IMG/M
3300034163\|Ga0370515_0202785	Not Available	845	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.05%
Host-Associated	Host-Associated	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.62%
Aquatic	Environmental → Aquatic	11.43%
Plants	Host-Associated → Plants	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.10%
Freshwater	Environmental → Aquatic → Freshwater	11.43%
Peat	Environmental → Terrestrial → Peat	9.52%
Roots	Host-Associated → Plants → Roots	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.43%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.43%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.52%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.33%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.52%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	3.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.95%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.52%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	9.52%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	3.81%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.81%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.90%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.95%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.95%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.95%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.95%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005952	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022529	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300027080	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028775	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2	Environmental	Open in IMG/M
3300028806	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_1	Environmental	Open in IMG/M
3300028877	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_3	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030677	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1001167531	3300004082	Bog Forest Soil	FPMVYQDLVRWIDERGYRAVPGPGREVWVNEIDDVADVAQQVFEIQVPFTRPALTEGT*
Ga0062384_1012442761	3300004082	Bog Forest Soil	ADAHGYQTSGPGREVWVNEVDDVAEVNQQVFEVQLPFTRPV*
Ga0062387_1007539263	3300004091	Bog Forest Soil	IFPMVYQDLVRWIDERGYRAVPGPGREVWVNEIDDVADVAQQVFEIQLPFTRPAGTAGT*
Ga0062389_1027236231	3300004092	Bog Forest Soil	PAASIFPMVYHDLVRWIEERGYRVVPGPGREVWVHDKDDLTDPGPQVFEIQLPFTRPAGTDEPERRPAL*
Ga0062388_1009183531	3300004635	Bog Forest Soil	ADAHGYQTSGPGREVWVNEVGDIAEVDQQVFEVQLPFTRPEPGPV*
Ga0066679_101710393	3300005176	Soil	VVYHDLVRWIDERGYRAVIGSNREVWVNEVDDIADVAQQVFEIQLPFTRPGPPAAA*
Ga0066388_1075618731	3300005332	Tropical Forest Soil	ASIFPMVYHDLVRWIGERGYQVAASAGRDVWVHEVDDIADVAQQVFEIQLAFTRPASTDE
Ga0070730_100132394	3300005537	Surface Soil	MVYHDLLRWAEEHGYEATGPGREIWVNEVDDIADVDQQVFEIQLPFTRPETPLA*
Ga0070764_108268273	3300005712	Soil	WIEERGYQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAGT*
Ga0080026_100215151	3300005952	Permafrost Soil	VYHDLARWADERGYQTAGPGREVWVHRVDDVADVSQQVFEIQLPFSRPEA
Ga0079220_103918382	3300006806	Agricultural Soil	VYHDLVRWIDERGYRAVIGSNREVWVNEVDDSADVAQQVVEIQLPFTRPCPPAAD*
Ga0126373_108294972	3300010048	Tropical Forest Soil	DLVRWADEHGYQVSPPGREVWVHEVHDIAEASQQVFEIQLPFSRPGVPPA*
Ga0074045_109883811	3300010341	Bog Forest Soil	PAASIFPVVYHDLVRWIHERGYHAAAGPGREVWVNEVDDIADVAQQVFEIQLPFTRTME*
Ga0126379_131363512	3300010366	Tropical Forest Soil	SDERGYHAAGPGREVWVNELDDIAEVAQQVFEIQLPFTRPAGTDGT*
Ga0134125_118077801	3300010371	Terrestrial Soil	HDLVRWIDERGYRAVIGSNREVWVNEVDDIADVAQQVFEIQLPFTRPGPPAAD*
Ga0136449_1038507871	3300010379	Peatlands Soil	AGIFPVVYHDLVRWIDERGYRAVTGSNREVWVNEVDDIADVAQQVFETQLPFTRPDAPSAG*
Ga0126383_115672022	3300010398	Tropical Forest Soil	AASIFPVVYHDLARWADEHGYQVSPPGREVWVHEVDDIAEASQQVFEVQLPFTRPEDPSA
Ga0150983_123154832	3300011120	Forest Soil	GIFPMVYHDLLRWIEERGYRRLPGSGQERDVWIHEIDDVADVAQQVFEIQLPFTRPAGAGGN*
Ga0137377_101660371	3300012211	Vadose Zone Soil	AVRSGPAASIFPVVYHDLVRWIDERGYRAVTGSNREVWVNEVDDIADVAQQVFEIQLPFTCPGPPAAD*
Ga0164302_113018951	3300012961	Soil	HDLVRCIDERGYRAVIGSNREVWVNEVDDIADVAQQVFEIQLPFTRPGPPAAD*
Ga0181531_101797942	3300014169	Bog	TRGIFPMVYHDLLRWIEERGYRRLPGSGQERDVWIHEIDDVADVAQQVFEIQLPFTRPAGAGGN*
Ga0182032_111221111	3300016357	Soil	IEAVIAVRNGAAASIFPMVYYDLARWIDERGYRAAGPGREVWVNEVHDIADAAQQVFEVQLPFTRPAGTDGT
Ga0182034_106246892	3300016371	Soil	AASIFPMVYHDLVRWIDERGYHAAAGPGREVWVNEVDDIAEVAQQVFEIQLPFIRTAGPDGT
Ga0182040_109604293	3300016387	Soil	YHDLARWIDERGYHAAGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Ga0187807_10196911	3300017926	Freshwater Sediment	PMVYHDLLRWAEEHGYEAHGPGREIWVNEVDDIADIDQQVFEIQLPFTRPETPPG
Ga0187814_100073961	3300017932	Freshwater Sediment	IFPMVYHDLLMFAGEHGYEADGPGREIWVNEVDDIADVDQQVFEIQLPFTRPETPPG
Ga0187821_104971511	3300017936	Freshwater Sediment	SGPAASIFPVVYHDLVRWIDERGYRAVIGSNREVWVNEVDDIADVAQQVFEIQLPFTRPDAQPAD
Ga0187815_104649041	3300018001	Freshwater Sediment	AAGIFPVVYQDLIRWASEHGYESHPPGREVWVHEVDDIADVSQQVIEIQLPFTRPEATAA
Ga0187765_107350273	3300018060	Tropical Peatland	ASIFPVVYHDLVRWIDERGYRAAAGPGREVWVNEVDDIADVAQQVFEVQLPFTRPAGPEG
Ga0187769_113504332	3300018086	Tropical Peatland	GPAVSIFPMVYHDLVRWIDEHGYRAVGPGREVWINEVDDIADVAQQVFEVQLPFVRSAGS
Ga0187768_10360973	3300020150	Tropical Peatland	ASIFPMVYHDLARWIDERGYHAAGPGREVWVNEVDDIADAAQQVFEIQLPLTRPAGTQET
Ga0210401_109967153	3300020583	Soil	DLFRWIEERGFQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAET
Ga0210396_100608211	3300021180	Soil	FPMVYQDLFRWIEERGFQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAET
Ga0210396_112481253	3300021180	Soil	FPMVYNDLVRWIEEQGYHPVPGPGREVWLHEIDDIADVAQQVFEIQLPFIRAAGTDEN
Ga0213875_105007521	3300021388	Plant Roots	PAVEMATAVRSGPAASIYPMVLHDLVRWIEERGYQAAAGGGRDVWLHEVDDVADVALQTFEIQMPFIRPAAGAADAG
Ga0210393_111952022	3300021401	Soil	MVYQDLARWIEEHGYQPVPGPGREVWVHDKDEIIDPGPQVLEIQLPFTRLAGTDEN
Ga0210386_104626813	3300021406	Soil	RSGPAASIFPMVYQDLFRWIEERGFQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAET
Ga0210386_108244333	3300021406	Soil	RSGPAASIFPMVYQDLFRWIEERGFQAVPGPGREVWVNEIDDVADVAQQVFEIQLPFTRPADTAGT
Ga0210390_102264253	3300021474	Soil	ASIFPMVYQDLFRWIEERGFQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAE
Ga0210390_104546171	3300021474	Soil	ASIFPMVYQDLFRWIEERGFQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAG
Ga0210398_100361831	3300021477	Soil	IFPMVYQDLVRWAEEHGYWYQVPGREVWINEVDDVSQIDQQVFEIQLPFTRSKAAAG
Ga0210398_100713433	3300021477	Soil	PAASIFPMVYQDLFRWIEERGFQAVPGPGREVWVNEIDDIADVAQQVFEIQLPFTRPAGTAGT
Ga0126371_117195891	3300021560	Tropical Forest Soil	RWIDERGCRAAGPGREVWVNEVHDIADVAQQVFEIQLPFTRPEPRRPE
Ga0242668_10115382	3300022529	Soil	AVRSGPSASIYPMVYQDLVRWVEERGYRPVPGPGRDVWVHEVDDIADVDQQVFEIQLPFTRPEAAGEN
Ga0179589_104883331	3300024288	Vadose Zone Soil	DLVRWIGDRGYRAAAGPCREVWVHEVDDIADVAQQVFEIQLPFTRPDVPPTG
Ga0208237_10483933	3300027080	Forest Soil	IFPMVYGDLVRWIGERGYQAVPGPGREVWVHVIDDVADVAQQVFEIQLPFVRPDTAPA
Ga0208044_11452432	3300027625	Peatlands Soil	VYHDLVRWIHERGYHAAAGPGREVWVNEVDDIADVAQQVFEVQLPFTRTME
Ga0209626_10831711	3300027684	Forest Soil	VYHDLVRWIDERGYRALIGSNREVWVNEVDDIADVAQQVFEIQLPFTHPGPPAAD
Ga0209447_101173721	3300027701	Bog Forest Soil	MPLTLPWVSGPAASIFPMVYQDLVRWIDERGYRAVPGPGREVWVNEIDDVAEVAQQVFEIQLPFTRPAGTAGT
Ga0209655_100106731	3300027767	Bog Forest Soil	VRSGPAAGIFPMVYQDLVRWIDERGYRAVPGPGREVWVNEIDDVAEVAQQVFEIQLPFTRPAGTAGT
Ga0209580_105298211	3300027842	Surface Soil	PMVYHDLLRWAEEHGYEATGPGREIWGNEVDDIADVDQQVFEIQLPFTRPETLLA
Ga0209166_105692542	3300027857	Surface Soil	VRNGPAANIFPMVYHDLLRWAEEHGYEATGPGREIWVNEVDDFADVDQQVFEIQLPFTRPETPLA
Ga0302231_100387991	3300028775	Palsa	AVRSGPAAGIFPMVYHDLVRWIEEQGYHPVPGPGREVWLHEVDEITDVAQQVFEIQLPFIRAAGTDEN
Ga0302221_102256763	3300028806	Palsa	HDLALWADEHGYHAAGPGREVWVNMVDDPADVSQQVFEVQLPFSRPEATPS
Ga0302235_100667391	3300028877	Palsa	LWADEHGYHAAGPGREVWVNMVDDPADVSQQVFEVQLPFSRPEATPS
Ga0311369_106683611	3300029910	Palsa	RSGPAAGIFPMVYHDLVRWIEEQGYHPVPGPGREVWLHEVDEITDVAQQVFEIQLPFIRAAGTDED
Ga0311352_101357391	3300029944	Palsa	AGIFPMVYNDLVGWIEEQGYHPVPGPGREVWLHEVDEIADVAQQVFEIQLPFIRAAGPSPDTGE
Ga0311338_102050151	3300030007	Palsa	NGPAASIFPFVYHDLALWADEHGYHAAGPGREVWVNMVDDPADVSQQVFEVQLPFSRPEATPS
Ga0302177_100414331	3300030053	Palsa	AATVRSGPAAGIFPMVYNDLVGWIEEQGYHPVPGPGREVWLHEVDEIADVAQQVFEIQLPFIRAAGPSPDTGE
Ga0302317_102214081	3300030677	Palsa	VYNDLVGWIEEQGYHPVPGPGREVWLHEVDEIADVAQQVFEIQLPFIRAALADTVE
Ga0307482_11389362	3300030730	Hardwood Forest Soil	SAMIFPMVYHDLARWADVHGYRTAGDSREIWINEVDDIADVEQQVFEIQLPFTR
Ga0302307_100457483	3300031233	Palsa	PAAGIFPMVYHDLVRWIEEQGYHPVPGPGREVWLHEVDEITDVAQQVFEIQLPFIRAAGTDEN
Ga0302324_10001075917	3300031236	Palsa	WADEHGYHAAGPGREVWVNMVDDPADVSQQVFEVQLPFSRPEATPS
Ga0318516_100274595	3300031543	Soil	YHDLARWIDERGYRAAGTGREVWVNEVHDIADAAQQVFEVQLPFTRPAGTDGT
Ga0318534_102798741	3300031544	Soil	DERGYHAAAGPGREVWVNEVDDIAEVAQQVFEIQLPFIRTAGSDGT
Ga0318528_101790321	3300031561	Soil	IDERGYHAAWPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Ga0318515_107556512	3300031572	Soil	RSGPAAGIFPFVYHDLIRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPEAPHA
Ga0318561_107637631	3300031679	Soil	VRSGPAASIFPMVYHDLVRWIDERGYHAAAGPGREVWVNEVDDIAEVAQQVFEIQLPFIRTAGPDGT
Ga0318572_109750502	3300031681	Soil	GPAAGIFPVVYHDLVRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPEAPHA
Ga0310686_1076707864	3300031708	Soil	VRNGLAASIFPMVYQDLVQWIDERGYRADPGPGREVWVHEVDDIAEVDQQVFEIQLPFTRGADRT
Ga0318493_104279512	3300031723	Soil	MSIFPMVYHDLARWIDERGYHAAWPGREVWVNEVDDIADVAQQVFEIQLPFTRPADTDQT
Ga0318492_107443083	3300031748	Soil	TVRSGPAASIFPMVYHDLARWIDERGCHAAGPGREVWVNEVHDIADVAQQVFEIQLPFIRPAGTDGT
Ga0307475_114320541	3300031754	Hardwood Forest Soil	VRSGPAASIFPMVYNDLVEWIVEHGYQPVPVAGRDVWVHEVDDIADAAQQVFEIQLPFIREP
Ga0318554_103059141	3300031765	Soil	PVVYHDLVRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPEAPHA
Ga0318521_101620023	3300031770	Soil	IRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPGAPPA
Ga0318521_106799461	3300031770	Soil	VYHDLVRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPEAPHA
Ga0318546_104725831	3300031771	Soil	IDERGYHAVAGPGREVWVNEVDDIADVAQQVVEIQLPFTRPAVTDGT
Ga0318546_108036061	3300031771	Soil	ARWIDERGYHAAGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Ga0318547_110859182	3300031781	Soil	MVYHDLARWIDERGYRAAGPGREVWVNEVHDIADAAQQVFEVQLPFTRPAGTDGT
Ga0318576_103431544	3300031796	Soil	HDLARWIDERGYHAAGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Ga0318550_105143351	3300031797	Soil	HDLVRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPEAPHA
Ga0318565_103859711	3300031799	Soil	FPVVYHDLVRWADEHGYQVSPPGREVWVHEVHDIAEASQQVIEIQLPFRRPEAPHA
Ga0310917_110433341	3300031833	Soil	AVRTGPAAGIFPVVYHDLARWADERGYQVSPPGREVWVHEVHDIAEAGQQVIEIQLPFQRPESPPAQEFT
Ga0306923_109906782	3300031910	Soil	TVRSGPAASIFPMVYHDLVRWIDERGYHAAAGPGREVWVNEVDDIAEVAQQVFEIQLPFIRTAGPDGT
Ga0306923_118355561	3300031910	Soil	PAASIFPMVYHDLARWIDERGYRAAGPGREVWVNEVHHIADAAQQVFEIQLPFTRPAGTDGT
Ga0306921_111311542	3300031912	Soil	VYHDLARWIDERGYHAAWPGREVWVNEVDDIADVAQQVFEIQLPFTRPADTDQT
Ga0310913_100930913	3300031945	Soil	QIEAATTVRSGPAASIFPMVYHDLVRWIDERGYHAAAGPGREVWVNEVDDIAEVAQQVFEIQLPFIRTAGPDGT
Ga0306926_123190973	3300031954	Soil	MVYHDLARWIDERGCHAAGPGREVWVNEVHDIADVAQQVFEIQLPFIRPAGTDGT
Ga0306922_115992321	3300032001	Soil	ARWIDERGYRAAGPGREVWVNEVHHIADAAQQVFEIQLPFTRPAGTDGT
Ga0318569_103805671	3300032010	Soil	PMVYHDLARWIDERGYRAAGPGREVWVNEVHDIADAAQQVFEIQLPFTRPAGTDGT
Ga0318545_103573141	3300032042	Soil	HDLVRWIDEHGYRAAGPDREVWINEVDDIADVAQQVFEIQLPFTRPADTDQT
Ga0318533_113085601	3300032059	Soil	IDERGYHAAWPGREVWVNEVDDIADVAQQVFEIQLPFTRPADTDQT
Ga0318524_100752263	3300032067	Soil	YHDLARWIDERGYHAAWPGREVWVNEVDDIADVAQQVFEIQLPFTRPADTDQT
Ga0318524_107096252	3300032067	Soil	FPMVYHDLVRWIDERGYRAVPGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Ga0306924_117771091	3300032076	Soil	GPAMSIFPMVYHDLARWIDERGYHAAWPGREVWVNEVDDIADVAQQVFEIQLPFTRPADTDQT
Ga0318577_102237073	3300032091	Soil	FPMVYHDLVRWIDERGYHAVAGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDGT
Ga0306920_1016648491	3300032261	Soil	AASIFPMVYHDLARWIDERGYHAAGPGREVWVNEVDDIADVAQQVFEIQLPFTRPAGTDG
Ga0335079_121835731	3300032783	Soil	VAVRNGPAAAIFPVVYHDLLRWIEERGYTPVPGPGRDVWIHEIDDIADVDQQVFEVQLPFTRPEGTDRG
Ga0335081_107565422	3300032892	Soil	AAASIFPVVYHDLVRWITEHGFQPRFPGREIWVHEVDDIERVSEQVFEVQLPFTRPDAAPAARP
Ga0335074_106057803	3300032895	Soil	TVRSGPAATIYPMVYNDLVQWIEEHGYRPVPGPTRDVWVHEIDDVADAAQQVIETQLPFTRPAGTDET
Ga0335074_106566443	3300032895	Soil	GPAAGIFPMVYQDLVRWIEERGYHPVPGPGREVWVHDKDDITDPGPQVFEIQLPFTRPAGTDDH
Ga0335076_117339672	3300032955	Soil	MVYHDLVRWIGERGYRVVAGAGREVWVNEVDDLAHVAHQVFEVQFPFTRPAGTEGS
Ga0335073_102935091	3300033134	Soil	MVYHDLVRWIGERGYRAAAGAGREVWVNEVDDVADVAQQVFEVQLPFTRPAGTEGS
Ga0310914_118812681	3300033289	Soil	IEAAITVRSGPAASIFPMVYHDLVRWIDERGYHAVAGPGREVWVNEVDDIADVAQQVVEIQLPFTRPAVTDGT
Ga0370515_0202785_2_205	3300034163	Untreated Peat Soil	VRSGPAAGIFPMVYHDLVRWIEEQGYHPVPGPGREVWLHEIDDIADVAQQVFEIQLPFIRAAGTDEN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095124

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences