NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095165

Metagenome Family F095165

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095165
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 50 residues
Representative Sequence MTSNYSPQNDFPDNDDWDYIFKLMILIALLIVALAVALIVLTPEIFNYLINL
Number of Associated Samples 57
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 35.24 %
% of genes from short scaffolds (< 2000 bps) 80.00 %
Associated GOLD sequencing projects 40
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(61.905 % of family members)
Environment Ontology (ENVO) Unclassified
(77.143 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(74.286 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 63.46%    β-sheet: 0.00%    Coil/Unstructured: 36.54%
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5101520253035404550MTSNYSPQNDFPDNDDWDYIFKLMILIALLIVALAVALIVLTPEIFNYLINLExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
33.3%66.7%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Marine Sediment
Deep Subsurface
Seawater
Aqueous
Seawater
Freshwater To Marine Saline Gradient
Estuarine
Pelagic Marine
Marine
Seawater
Marine Harbor
Saline Water And Sediment
Soil
4.8%61.9%2.9%5.7%2.9%2.9%10.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1002221733300000116MarineMASNYSPQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLINL*
DelMOSpr2010_1006976833300000116MarineMTSKYSPQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLITL*
Ga0074242_1046012423300005346Saline Water And SedimentMITNYSPENNFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLITL*
Ga0074649_103635433300005613Saline Water And SedimentMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0074649_106361323300005613Saline Water And SedimentMITNYSPENNFPNNDDWDYIFKLMIVIAVLITLLAFALIFLTPEIFNYLITL*
Ga0075474_1000209783300006025AqueousMTSNYSPQNDFPNNEDWDYIFKLMILIALLITALAVALIVLTPEIFNYLINL*
Ga0075462_1014550523300006027AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0075462_1019705423300006027AqueousMTSNYSPQNDFPNNDDWDYIFKLMILIALLITALAVALIVLTPEIFNYLINL*
Ga0075466_115599223300006029AqueousMTSNYSPQNDFPDNDDWDYIFKLMITISILIVALAVALIVLTPEIFNYLITL*
Ga0070749_1020306933300006802AqueousQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYIKNLILR*
Ga0070749_1024686533300006802AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLINL*
Ga0070749_1033411233300006802AqueousMASNYSPQNDFPDNDDWDYIFKLMITILLLIVALTVALIATPEIFNYLITL*
Ga0070749_1053432323300006802AqueousMTSNYSPQNDFPNNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL*
Ga0070749_1072478223300006802AqueousQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0070754_1013569123300006810AqueousMTSNYSPQNDFPNNEDWDYIFKLMILIALLITALAVALIGLTPEIFNYLINL*
Ga0070754_1022514233300006810AqueousMITNYSTQNDFPNNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL*
Ga0070754_1032303923300006810AqueousMTSNYSPQNDFPDNDDWDYIFKLMILIALLITALAVALIVLTPEIFNYLINL*
Ga0070754_1052146313300006810AqueousFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0070750_10001729183300006916AqueousMISNYSPQNDFPNNDDWDYLFKLMILIALLITLFAVAIILLTPEIFNYLITL*
Ga0070750_1012589233300006916AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYIKNLILR*
Ga0070750_1026336413300006916AqueousDDWDYIFKLMILIALLITALAVALIVLTPEIFNYLITL*
Ga0070746_1041782723300006919AqueousMITNYSTQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0070748_111921733300006920AqueousMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAFALIVLTPEIFNYLINL*
Ga0070745_116844123300007344AqueousMITNYSTQNDFPNNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0070753_102167713300007346AqueousISMTSNYSPQNDFPNNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL*
Ga0070753_128952913300007346AqueousNISMTSNYSPQNDFPNNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLITL*
Ga0099851_101430723300007538AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALILLTPEIFNYLITL*
Ga0099851_102940953300007538AqueousPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLINL*
Ga0099851_103274233300007538AqueousMITNYSTQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLITL*
Ga0099851_108745243300007538AqueousDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN*
Ga0099851_115721033300007538AqueousMTSNYSPQNDFPDNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLITL*
Ga0099849_116225123300007539AqueousMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLINL*
Ga0099847_106954333300007540AqueousPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN*
Ga0099847_107842413300007540AqueousFPDNDDWDYIFKLMILIALLITALAIALIVLTPEIFNYLITLKIN*
Ga0099846_105095113300007542AqueousKMITNYSTQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLITL*
Ga0099846_109731113300007542AqueousPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL*
Ga0099846_116369333300007542AqueousMITNYSTQNDFPNNDDWDYIFKLMITISLLIVALAVALIVLTPEIFN
Ga0099846_128851823300007542AqueousMTSNYSPQKDFPDNDDWDYIFKLMILIALLITALAVALILLTPEIFNYLINL*
Ga0070751_106323043300007640AqueousMTSNYSPQNDFPDNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL*
Ga0070751_122377713300007640AqueousMITNYSTQNDFPNNDDWDYIFKLMITISLLIVSLAVALIVLTPEIFNYLINL*
Ga0099850_107564233300007960AqueousMTSNYSPQNDFPDNNDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLINL*
Ga0099850_140720423300007960AqueousLKNYKMITNYSTQNDFPNNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL*
Ga0102814_1079684023300009079EstuarineMINNYSTENDFPNNDDWDYIFKLMITILLLIVALSVALIVLTPEIFNYLITL*
Ga0114918_1035879013300009149Deep SubsurfaceNDFPNNDDWDYIFKLMILIAFLITALAFALVFFSPEIYTYILTLITN*
Ga0114918_1046403123300009149Deep SubsurfaceMISNYSPENDFPNNDDWDFVFKLLILLAILIAALAFATIILTPEIFNYLINL*
Ga0114918_1071922413300009149Deep SubsurfacePENDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLITLKL*
Ga0115571_110159423300009495Pelagic MarineMINNYSPENDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLINL*
Ga0136655_124575023300010316Freshwater To Marine Saline GradientILINILMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAFALILLTPEIFNYLINL*
Ga0129324_1017582223300010368Freshwater To Marine Saline GradientMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAFALILLTPEIFNYLINL*
Ga0180120_1017880213300017697Freshwater To Marine Saline GradientMTSKYSPQNDFPDNDDWDYIFKLMITISLLIVALAV
Ga0180120_1018610213300017697Freshwater To Marine Saline GradientPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN
Ga0180120_1020566133300017697Freshwater To Marine Saline GradientMTSNYSPQKDFPNNEDWDYIFKLMILIALLITALAVALILLTPEIFNYLINL
Ga0180120_1036307033300017697Freshwater To Marine Saline GradientPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL
Ga0213861_1002599273300021378SeawaterMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLINL
Ga0213861_1050546223300021378SeawaterMTSNYSPQNDFPNNDDWDYIFKLMILIALLITALAVALIVLTPEIFNYLITLKIN
Ga0213868_1018207943300021389SeawaterMTSNYSPQNDFPDNDDWDYIFKLMILIALLIVALAVALIVLTPEIFNYLINL
Ga0196883_1000013103300022050AqueousMTSNYSPQNDFPNNEDWDYIFKLMILIALLITALAVALIVLTPEIFNYLINL
Ga0212030_101898833300022053AqueousMITNYSTQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLITL
Ga0212030_102520223300022053AqueousMTSNYSPQNDFPNNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL
Ga0212029_103547823300022063AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL
Ga0212024_100997243300022065AqueousSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYIKNLILR
Ga0212021_100487333300022068AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYIKNLILR
Ga0196903_1000388163300022169AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALILLTPEIFNYLITL
Ga0196901_103410163300022200AqueousMTSKYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN
Ga0196901_108660733300022200AqueousMTSNYSPQKDFPDNDDWDYIFKLMILIALLITALAIALIVLTPEIFNYLINL
Ga0196901_119517533300022200AqueousSNYSPQNDFPDNNDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL
(restricted) Ga0233412_1015174933300023210SeawaterMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL
(restricted) Ga0255040_1020112233300024059SeawaterMTSNYSPQNDFPNNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLITL
(restricted) Ga0255039_1002766033300024062SeawaterMTSNYSPQNDFPNNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLINL
Ga0210003_106304833300024262Deep SubsurfaceMISNYTPENDFPNNDDWDYIFKLMILIAFLITALAFALVFFSPEIYTYILTLITN
Ga0210003_110211823300024262Deep SubsurfaceMISNYSPENDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLINL
(restricted) Ga0255046_1028301123300024519SeawaterMISNYSPQNDFPNNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLINL
Ga0208303_100526553300025543AqueousMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN
Ga0208303_101417733300025543AqueousMTSKYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL
Ga0208303_104525813300025543AqueousNDFPDNDDWDYIFKLMILIALLITALAIALIVLTPEIFNYLITLKIN
Ga0208303_106294913300025543AqueousNDFPDNDDWDYIFKLMILIALLITALAIALIVLTPEIFNYLINL
Ga0208303_107345633300025543AqueousMTSNYSPQNDFPDNDDWDYIFKLMILIALLITALAIALIVLTPEIFNYLI
Ga0209716_117289123300025626Pelagic MarineMINNYSPENDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLINL
Ga0208160_101042163300025647AqueousKLLTILINISMTSKYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN
Ga0208160_102115143300025647AqueousMTSNYSPQNDFPDNDDWDYIFKLMILIALLITALAIALIVLTPEIFNYLINL
Ga0208160_102489753300025647AqueousITNYSTQNDFPDNDDWDYIFKLMITISLLIVALTVALIATPEIFNYLITL
Ga0208795_102126023300025655AqueousMTSNYSPQKDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLITLKIN
Ga0208899_1001098273300025759AqueousMISNYSPQNDFPNNDDWDYLFKLMILIALLITLFAVAIILLTPEIFNYLITL
Ga0208899_104242653300025759AqueousDYIFKLMITISLLIVALAVALIVLTPEIFNYLITL
Ga0208899_120757323300025759AqueousMTSNYSPQNDFPDNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLINL
Ga0208767_108076733300025769AqueousMITNYSTQNDFPNNDDWDYIFKLMILIALLITSLAVALIVLTPEIFNYLINL
Ga0208645_101004543300025853AqueousMTSNYSPQNDFPDNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLITL
Ga0208645_116746333300025853AqueousMTSNYSPQNDFPDNDDWDYIFKLMILIALLITALAVALIVLTPEIFNYLINL
Ga0208644_110877523300025889AqueousMASNYSPQNDFPDNDDWDYIFKLMITILLLIVALTVALIATPEIFNYLITL
Ga0209536_10083312513300027917Marine SedimentNISMTSNYSPQNDFPDNDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLINL
(restricted) Ga0233413_1012837413300027996SeawaterDDWDFAFKLLILLAILIAALAFATIILTPEIFNYLINL
Ga0135226_100760633300029308Marine HarborMTSNYSPQNDFPNNDDWDFAFKLLILLAILIAALGFATIILTPEIFNYLITL
Ga0307380_1049635833300031539SoilQNDFPNNDDWDYIFKLMILIAILITLLSFALIFLTPEIFNYLINL
Ga0307380_1064194033300031539SoilMISNYSPQNDFPNNDDWDYIFKLMILIAFLITALAFALVFFSPEIYTYILTLITN
Ga0307380_1085280613300031539SoilISNYSPENDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPKIFNYLINL
Ga0307379_1048780733300031565SoilMISNYSPQNDFPNNDDWDYIFKLMILIAILITLLSFALIFLTPEIFNYLINL
Ga0307376_1007165743300031578SoilMISNYSPQNDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLINL
Ga0307375_1019544913300031669SoilMISNYSPQNDFPNNDDWDYIFKLMILIAILITLLAFALIFLTP
Ga0307375_1030616533300031669SoilMISNYSPQNDFPNNDDWDFVFKLLILLAILIATLAFATIILTPEIFNYLINL
Ga0307375_1053378913300031669SoilSNYSPENDFPNNDDWDYIFKLMILISILITLLAFALIFLTPEIFNYLINL
Ga0307377_1017819543300031673SoilMISNYSPQNDFPNNDDWDYIFKLMILIAILITLLAFALIFLT
Ga0307377_1049556633300031673SoilMISNYSPENDFPNNDDWDYIFKLMILISILITLLAFALIFLTPEIFNYLINL
Ga0307377_1053449333300031673SoilMISNYSPENDFPNNDDWDYIFKLMILIAILITLLAFALIFLTPEIFNYLITLKL
Ga0348336_151129_538_6903300034375AqueousMITNYSTQNDFPNNDDWDYIFKLMITISLLIVALAVALIVLTPEIFNYLIN
Ga0348337_136162_610_7203300034418AqueousMITNYSTQNDFPNNDDWDYIFKLMITISLLIVALAVA


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