NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095219

Metagenome / Metatranscriptome Family F095219

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095219
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 45 residues
Representative Sequence MNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGGGADAKPLINIRF
Number of Associated Samples 84
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 10.48 %
% of genes near scaffold ends (potentially truncated) 16.19 %
% of genes from short scaffolds (< 2000 bps) 75.24 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (66.667 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(21.905 % of family members)
Environment Ontology (ENVO) Unclassified
(32.381 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.476 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 34.25%    β-sheet: 5.48%    Coil/Unstructured: 60.27%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF00528BPD_transp_1 43.81
PF01510Amidase_2 19.05
PF12911OppC_N 10.48
PF12867DinB_2 3.81
PF00496SBP_bac_5 1.90
PF09992NAGPA 1.90
PF00196GerE 0.95
PF00326Peptidase_S9 0.95


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms66.67 %
UnclassifiedrootN/A33.33 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2162886012|MBSR1b_contig_4617102Not Available1078Open in IMG/M
3300001536|A1565W1_11683642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1570Open in IMG/M
3300001661|JGI12053J15887_10315437Not Available762Open in IMG/M
3300005166|Ga0066674_10020511All Organisms → cellular organisms → Bacteria2850Open in IMG/M
3300005171|Ga0066677_10295766All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300005178|Ga0066688_10467306Not Available815Open in IMG/M
3300005178|Ga0066688_10563382Not Available732Open in IMG/M
3300005186|Ga0066676_10082379All Organisms → cellular organisms → Bacteria1913Open in IMG/M
3300005294|Ga0065705_10396346All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium889Open in IMG/M
3300005440|Ga0070705_100723512Not Available784Open in IMG/M
3300005446|Ga0066686_10006121All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila5848Open in IMG/M
3300005446|Ga0066686_10191232Not Available1368Open in IMG/M
3300005447|Ga0066689_10333917Not Available944Open in IMG/M
3300005468|Ga0070707_100943649All Organisms → cellular organisms → Bacteria828Open in IMG/M
3300005536|Ga0070697_100766456Not Available853Open in IMG/M
3300005536|Ga0070697_100800534All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium834Open in IMG/M
3300005552|Ga0066701_10709452Not Available604Open in IMG/M
3300005557|Ga0066704_10783361Not Available594Open in IMG/M
3300005568|Ga0066703_10094311All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1750Open in IMG/M
3300005568|Ga0066703_10336326All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300005578|Ga0068854_100006908All Organisms → cellular organisms → Bacteria7238Open in IMG/M
3300006046|Ga0066652_101264021Not Available698Open in IMG/M
3300006796|Ga0066665_10446385Not Available1068Open in IMG/M
3300006800|Ga0066660_10560674All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300007258|Ga0099793_10439306All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300007258|Ga0099793_10678442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium519Open in IMG/M
3300009012|Ga0066710_100541292All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1760Open in IMG/M
3300009038|Ga0099829_11740783All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300009088|Ga0099830_10598944All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium904Open in IMG/M
3300009088|Ga0099830_10931711Not Available719Open in IMG/M
3300009090|Ga0099827_10552363Not Available991Open in IMG/M
3300009137|Ga0066709_100497481All Organisms → cellular organisms → Bacteria1716Open in IMG/M
3300009174|Ga0105241_12085556Not Available560Open in IMG/M
3300010304|Ga0134088_10482060All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium610Open in IMG/M
3300010336|Ga0134071_10275187Not Available842Open in IMG/M
3300010399|Ga0134127_11792756Not Available690Open in IMG/M
3300012019|Ga0120139_1000804All Organisms → cellular organisms → Bacteria9972Open in IMG/M
3300012198|Ga0137364_11116691All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium593Open in IMG/M
3300012200|Ga0137382_10175856All Organisms → cellular organisms → Bacteria1462Open in IMG/M
3300012200|Ga0137382_10532405Not Available836Open in IMG/M
3300012208|Ga0137376_10045029All Organisms → cellular organisms → Bacteria3584Open in IMG/M
3300012208|Ga0137376_11235971All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium636Open in IMG/M
3300012209|Ga0137379_10182970All Organisms → cellular organisms → Bacteria2008Open in IMG/M
3300012211|Ga0137377_11678888All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium557Open in IMG/M
3300012685|Ga0137397_10012392All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila5951Open in IMG/M
3300012685|Ga0137397_11035247All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300012685|Ga0137397_11079661Not Available586Open in IMG/M
3300012918|Ga0137396_10096604All Organisms → cellular organisms → Bacteria2103Open in IMG/M
3300012927|Ga0137416_10082020All Organisms → cellular organisms → Bacteria2374Open in IMG/M
3300012927|Ga0137416_10753845Not Available858Open in IMG/M
3300012927|Ga0137416_11089940All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300012930|Ga0137407_10424343All Organisms → cellular organisms → Bacteria1234Open in IMG/M
3300012955|Ga0164298_10473567All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium830Open in IMG/M
3300012972|Ga0134077_10135578Not Available974Open in IMG/M
3300017656|Ga0134112_10006090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi3878Open in IMG/M
3300017657|Ga0134074_1186874All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium732Open in IMG/M
3300018000|Ga0184604_10361551Not Available517Open in IMG/M
3300018027|Ga0184605_10007038All Organisms → cellular organisms → Bacteria4161Open in IMG/M
3300018027|Ga0184605_10010264All Organisms → cellular organisms → Bacteria3559Open in IMG/M
3300018027|Ga0184605_10074070All Organisms → cellular organisms → Bacteria1477Open in IMG/M
3300018027|Ga0184605_10086567All Organisms → cellular organisms → Bacteria1372Open in IMG/M
3300018028|Ga0184608_10000006All Organisms → cellular organisms → Bacteria44093Open in IMG/M
3300018028|Ga0184608_10024968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2206Open in IMG/M
3300018054|Ga0184621_10005034All Organisms → cellular organisms → Bacteria3603Open in IMG/M
3300018061|Ga0184619_10205477Not Available905Open in IMG/M
3300018431|Ga0066655_10022106All Organisms → cellular organisms → Bacteria2977Open in IMG/M
3300019866|Ga0193756_1031789Not Available745Open in IMG/M
3300019878|Ga0193715_1016427All Organisms → cellular organisms → Bacteria1602Open in IMG/M
3300019885|Ga0193747_1016268All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1818Open in IMG/M
3300023058|Ga0193714_1001572All Organisms → cellular organisms → Bacteria3802Open in IMG/M
3300025907|Ga0207645_10214041All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1270Open in IMG/M
3300026295|Ga0209234_1260941Not Available561Open in IMG/M
3300026297|Ga0209237_1278551All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium513Open in IMG/M
3300026300|Ga0209027_1056746All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1464Open in IMG/M
3300026300|Ga0209027_1268269Not Available548Open in IMG/M
3300026309|Ga0209055_1027753All Organisms → cellular organisms → Bacteria2628Open in IMG/M
3300026312|Ga0209153_1022702All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2084Open in IMG/M
3300026318|Ga0209471_1016381All Organisms → cellular organisms → Bacteria3794Open in IMG/M
3300026327|Ga0209266_1147922All Organisms → cellular organisms → Bacteria → Terrabacteria group955Open in IMG/M
3300026331|Ga0209267_1225825Not Available690Open in IMG/M
3300026536|Ga0209058_1064060All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2008Open in IMG/M
3300026538|Ga0209056_10203151All Organisms → cellular organisms → Bacteria1448Open in IMG/M
3300026542|Ga0209805_1005267All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi7153Open in IMG/M
3300027546|Ga0208984_1066050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium778Open in IMG/M
3300027681|Ga0208991_1143238Not Available708Open in IMG/M
3300027875|Ga0209283_10560620Not Available728Open in IMG/M
3300028536|Ga0137415_10032514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila5130Open in IMG/M
3300028711|Ga0307293_10143072Not Available761Open in IMG/M
3300028711|Ga0307293_10210204Not Available619Open in IMG/M
3300028715|Ga0307313_10178545Not Available658Open in IMG/M
3300028719|Ga0307301_10001658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi6274Open in IMG/M
3300028771|Ga0307320_10128482Not Available974Open in IMG/M
3300028819|Ga0307296_10098317All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila1567Open in IMG/M
3300028824|Ga0307310_10469987All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium631Open in IMG/M
3300028828|Ga0307312_10063113All Organisms → cellular organisms → Bacteria2237Open in IMG/M
3300028828|Ga0307312_10126302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Caldilineae → Caldilineales → Caldilineaceae → Caldilinea → Caldilinea aerophila1606Open in IMG/M
3300028881|Ga0307277_10001280All Organisms → cellular organisms → Bacteria9766Open in IMG/M
3300028885|Ga0307304_10353518All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium657Open in IMG/M
3300031058|Ga0308189_10267343Not Available653Open in IMG/M
3300031720|Ga0307469_10140633All Organisms → cellular organisms → Bacteria → Terrabacteria group1787Open in IMG/M
3300031820|Ga0307473_10133491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1384Open in IMG/M
3300032174|Ga0307470_11655964All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium537Open in IMG/M
3300032180|Ga0307471_100242037All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1848Open in IMG/M
3300032180|Ga0307471_100297111Not Available1700Open in IMG/M
3300032180|Ga0307471_102312472All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium678Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil21.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil20.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.19%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment8.57%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.67%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil4.76%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.81%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.86%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.90%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.95%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2162886012Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300001536Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300005166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005186Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125EnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300010304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012019Permafrost microbial communities from Nunavut, Canada - A7_5cm_12MEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012972Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018054Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1EnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300019866Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m1EnvironmentalOpen in IMG/M
3300019878Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m2EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300023058Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026309Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026327Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026536Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300027546Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028711Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028719Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182EnvironmentalOpen in IMG/M
3300028771Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028881Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116EnvironmentalOpen in IMG/M
3300028885Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
MBSR1b_0610.000066202162886012Miscanthus RhizosphereMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGSGADAKPFINIRF
A1565W1_1168364223300001536PermafrostMNSDSGFSTGLAIGLLFVVVVVLVLLATVPIGGGADAKPLINIRF*
JGI12053J15887_1031543723300001661Forest SoilMQSDSGFSAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0066674_1002051123300005166SoilMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGADPKPLINIRF*
Ga0066677_1029576623300005171SoilMRTDSGFSAGLAIGLLLLVIVVLVILATVPIGSGSDAKPFINIRF*
Ga0066688_1046730623300005178SoilMRSDNGFAAGLAIGLLVLVVVVVVLLATVPIGGGTDPKPLINIRF*
Ga0066688_1056338223300005178SoilVLAETSMRTDSGFSAGLAIGLLLLVIVVLVILATVPIGSGSDAKPFINIRF*
Ga0066676_1008237923300005186SoilMQSDSGFSAGLAIGLLVLVVVVLVILATVPLGSGNDARPLINIRF*
Ga0065705_1039634613300005294Switchgrass RhizosphereMNSDSGFSAGLAIGLLVVVIVVLVLLATIPIGGGADAKPLINI
Ga0070705_10072351223300005440Corn, Switchgrass And Miscanthus RhizosphereMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGSGADAKPFINIRF*
Ga0066686_1000612153300005446SoilMQTNGGFSAGLAIGLLLLVVVILVLLATVPIGGGADPKPLINIRF*
Ga0066686_1019123223300005446SoilMQSDSGFSAGLAIGLLVLVVVVLVILATVPLGSGTDARPLINIRF*
Ga0066689_1033391723300005447SoilMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0070707_10094364923300005468Corn, Switchgrass And Miscanthus RhizosphereVRTDSGFSAGLAIGLLIVVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0070697_10076645623300005536Corn, Switchgrass And Miscanthus RhizosphereMRTDSGFSAGLAIGLLIVVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0070697_10080053423300005536Corn, Switchgrass And Miscanthus RhizosphereVLRAKSMQSNGGFSAGLAIGLLVLVVVVLVLLATVPIGGGADPKPLINIRF*
Ga0066701_1070945223300005552SoilCSAPSSMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0066704_1078336123300005557SoilMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGADPKPLINMRF*
Ga0066703_1009431133300005568SoilMQTNGGFSAGLAIGLLVLVIVVLVLLATVPIGGGADPKPLINIRF*
Ga0066703_1033632623300005568SoilMRSDSGFSAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0068854_10000690883300005578Corn RhizosphereVLASKRMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGSGADAKPFINIRF*
Ga0066652_10126402113300006046SoilMRSDSGFSAGLAIGLLVMVVVVLVILATVPIGGGADAKPLINIRF*
Ga0066665_1044638523300006796SoilMCSAPSSMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0066660_1056067423300006800SoilLAFDVLAQASMRTDSGFSAGLAIGLLLLVIVVLVILATVPIGSGSDAKPFINIRF*
Ga0099793_1043930623300007258Vadose Zone SoilMRTDNGFSAGLAIGLLVVVVVVLVLLATIPIGAGDDAKPFINIKF*
Ga0099793_1067844223300007258Vadose Zone SoilMSSDSGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF*
Ga0066710_10054129233300009012Grasslands SoilMRDSGFAAGLAIGLLVLVVGVLMLLATVPIGGGADPKPLINIRF
Ga0099829_1174078313300009038Vadose Zone SoilMRTDSGFSAGLAIGLLIVIVVVLVILATVPISGGADAKPLINIRF*
Ga0099830_1059894423300009088Vadose Zone SoilMRTDSGFSAGLAIGLLVIVVVLLVLLVTVPIGGGNDAKPLIDIRFR*
Ga0099830_1093171113300009088Vadose Zone SoilSRMRTDGGFSAGLAIGLLIVVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0099827_1055236313300009090Vadose Zone SoilMRTDSGFSAGLAIGLLLLVIVVLVILATVPIGSGTDAKPLINIRF*
Ga0066709_10049748133300009137Grasslands SoilMRTDNGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF*
Ga0105241_1208555623300009174Corn RhizosphereASKRMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGSGADAKPFINIRF*
Ga0134088_1048206023300010304Grasslands SoilMQTNGGFSAGLAIGLLLLIVVVLVLLATVPIGGGDNPQPLINIRF*
Ga0134071_1027518723300010336Grasslands SoilAGLAIGLLIVIVVVLVILATVPIGGGDDAKPLINIRF*
Ga0134127_1179275623300010399Terrestrial SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGGGADAKPLINIRF*
Ga0120139_100080433300012019PermafrostMNSDSGFSAGLAIGLLFVVVVVLVLLATVPIGGGADAKPLINIRF*
Ga0137364_1111669123300012198Vadose Zone SoilMQTDSGFSTGLAIGLLVVVVVVLVLLATVPIGNGADAKPLIDIRF*
Ga0137382_1017585623300012200Vadose Zone SoilMRSDSGFSAGLAIGLLVVVVVVLVILSTVPIGGGADAKPLINIRF*
Ga0137382_1053240513300012200Vadose Zone SoilMRTDSGFSAGLAIGLLVVVVVVLVLLATIPIGGGADAKPLINIRF*
Ga0137376_1004502913300012208Vadose Zone SoilMRTDNGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLIN
Ga0137376_1123597123300012208Vadose Zone SoilMRSDSGFSAGLAIGLLVGGGVLLVILATVPIGGGADAKPLINIRF*
Ga0137379_1018297023300012209Vadose Zone SoilMRTDDGFAAGLAIGLLVLVVVLLVLLATVPIGGGTDPKPLINVRF*
Ga0137377_1167888823300012211Vadose Zone SoilMNNDSGFSAGLAIGLLVLVVVVLVLLATVPIGGGADAKPLINIKF*
Ga0137397_1001239233300012685Vadose Zone SoilMSSDSGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKQIIDIRF*
Ga0137397_1103524723300012685Vadose Zone SoilMSSDSGFSAGLAIGLLVVVVVVLVLLATVPIGNDARPIIDIRF*
Ga0137397_1107966123300012685Vadose Zone SoilMSTDSGFSAGLAIGLLVVIVVVLVLLATVPIGNEAKPIIDIRF*
Ga0137396_1009660413300012918Vadose Zone SoilMSTDSGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF*
Ga0137416_1008202013300012927Vadose Zone SoilMSSDSGFSAGLAIGLLIVVVVVLVLLATVPIGNDAKPIIDIRF*
Ga0137416_1075384523300012927Vadose Zone SoilMQSDSGFSAGLAIGLLVLVVVVLVLLATFPIGGGTDPKPLINIRF*
Ga0137416_1108994013300012927Vadose Zone SoilVRTDSGFSAGLAIGLLVVVVVVLVLLATIPIGAGDDAKPFINIKF*
Ga0137407_1042434323300012930Vadose Zone SoilMSTDSGFSAGLAIGLLVVIVVVLVLLATVPIGNDAKPIIDIRF*
Ga0164298_1047356723300012955SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGSGADAKPFIISRF*
Ga0134077_1013557823300012972Grasslands SoilGFSAGLAIGLLLLIVVVLVLLATVPIGGGDNPQPLINIRF*
Ga0134112_1000609033300017656Grasslands SoilMQTNGGFSAGLAIGLLLLIVVVLVLLATVPIGGGDNPQPLINIRF
Ga0134074_118687423300017657Grasslands SoilMQSDSGFSAGLAIGLLVLVVVVLVILATVPLGSGSDARPLINIRF
Ga0184604_1036155123300018000Groundwater SedimentMNSDSGFSAGLAIGLLVVVVVILVLLATVPIGSGADAKPLLDIRF
Ga0184605_1000703823300018027Groundwater SedimentMRSDSGFSAGLAIGLLVLVVVVLVLLATIPIGGGADAKPLINIRF
Ga0184605_1001026423300018027Groundwater SedimentMGSDGGFSTGLAIGLLVVVVVVLVLLATVPIGGGADAKPLINIRF
Ga0184605_1007407023300018027Groundwater SedimentMSTDSGFSAGLAIGLLVVVVVILVLLATVPIGSGADAKPLIDIRF
Ga0184605_1008656723300018027Groundwater SedimentMNTDRGFSAGLAIGLLVVVVVVLVLLATVPIGGGADAKPLINIRF
Ga0184608_10000006203300018028Groundwater SedimentVSSDGGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF
Ga0184608_1002496843300018028Groundwater SedimentMNSDSGFSAGLAIGLLMLVVVVLVLLATVPIGSGADAKPFINIRF
Ga0184621_1000503463300018054Groundwater SedimentVLARYRVSSDGGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF
Ga0184619_1020547723300018061Groundwater SedimentMNTDHGFSAGLAIGLLVVVVVVLVLLATVPIGGGADAKPLINIRF
Ga0066655_1002210643300018431Grasslands SoilMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGADPKPLINIRF
Ga0193756_103178923300019866SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGGGADAKPLINIKF
Ga0193715_101642723300019878SoilMRSDGGFSTGLAIGLLVLVVVVLVLLATIPIGGGADAKPLINIRF
Ga0193747_101626823300019885SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGGGADAKPLINIKF
Ga0193714_100157223300023058SoilMNSDSGFSAGLAIGLLVVVIVVLVLLATIPIGGGADAKPFINIRF
Ga0207645_1021404123300025907Miscanthus RhizosphereVLASKRMNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGSGADAKPFINIRF
Ga0209234_126094123300026295Grasslands SoilVRSDNGFSAGLAIGVLLLVVVLLVILVSVPIGGGTDAKPLINIRF
Ga0209237_127855123300026297Grasslands SoilMQTNGGFSAGLAIGLLVLVVVVLVLLATVPIGGGPDPKPLINIRF
Ga0209027_105674623300026300Grasslands SoilVRSDNGFSAGLAIGVLLLVVVLLVILVSVPIGGGSDAKPLINIRF
Ga0209027_126826923300026300Grasslands SoilMRSDGGFSAGLAIGLLVLVVVVLVILATVPIGGGADAKPLINIRF
Ga0209055_102775323300026309SoilMRTDSGFSAGLAIGLLLLVIVVLVILATVPIGSGSDAKPFINIRF
Ga0209153_102270223300026312SoilMRDSGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF
Ga0209471_101638143300026318SoilMRTDSGFPAGLAIGLLLLVIVVLVILATVPIGSGSDAKPFINIRF
Ga0209266_114792213300026327SoilMRTDSGFSAGLAIGLLVLVVVVLVILATVPIGGGDDAKPLINIRF
Ga0209267_122582513300026331SoilGLAIGLLLLVIVVLVILATVPIGSGSDAKPFINIRF
Ga0209058_106406023300026536SoilMQTNGGFSAGLAIGLLLLVVVILVLLATVPIGGGADPKPLINIRF
Ga0209056_1020315123300026538SoilMRTDNGFAAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF
Ga0209805_100526763300026542SoilMRSDNGFAAGLAIGLLVLVVVVVVLLATVPIGGGTDPKPLINIRF
Ga0208984_106605023300027546Forest SoilMQSDSGFSAGLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF
Ga0208991_114323813300027681Forest SoilLAIGLLVLVVVVLVLLATVPIGGGTDPKPLINIRF
Ga0209283_1056062023300027875Vadose Zone SoilWSMRTDSGFSAGLAIGLLVIVVVLLVLLVTVPIGGGNDAKPLIDIRFR
Ga0137415_1003251473300028536Vadose Zone SoilMQSDSGFSAGLAIGLLVLVVVVLVLLATFPIGGGTDPKPLINIRF
Ga0307293_1014307213300028711SoilSGYSAGLAIGLLVVVIVVLVLLATIPIGGGADAKPFINIRF
Ga0307293_1021020423300028711SoilGGFSTGLAIGLLVLVVVVLVLLATIPIGGGADAKPLINIRF
Ga0307313_1017854513300028715SoilPAQRVLASWRMNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGGGPDAKPLIDIRF
Ga0307301_1000165873300028719SoilMNSDSGFSAGLAIGLLVLVVVVLVLLATVPIGSGADAKPFINIRF
Ga0307320_1012848213300028771SoilMSSDSGFSAGLAIGLLVVVVVVLVLLATIPIGGGADAKPLINIRF
Ga0307296_1009831733300028819SoilALRVLARYRVSSDGGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF
Ga0307310_1046998713300028824SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGSGADAKPSS
Ga0307312_1006311323300028828SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGGGADAKPFINIKF
Ga0307312_1012630233300028828SoilMNSDSGFSAGLAIGLLVVVIVVLVLLATIPIGGGADAKPFINIRL
Ga0307277_1000128063300028881SoilMRSDSGFSAGLAIGLLVVVVVVLVLLATVPIGNDAKPIIDIRF
Ga0307304_1035351823300028885SoilVLASKRVNSDSGFSAGLAIGLLVVVVVVLVLLATIPIGGGADAKPLINIRF
Ga0308189_1026734313300031058SoilLAIGLLVVVIVVLVLLATIPIGGGADAKPFINIRF
Ga0307469_1014063323300031720Hardwood Forest SoilMQTDSGFSAGLAIGLLIVVVVVLVLLATVPIGGGADAKPFINIRF
Ga0307473_1013349123300031820Hardwood Forest SoilMSSDSGFSAGLAIGLLVVVVVVLVLLATVPIGSGADAKPFINIRF
Ga0307470_1165596413300032174Hardwood Forest SoilMNSDSGFSAGLAIGLLVVVVVVLVLLATVPIGSGADAKPFIN
Ga0307471_10024203723300032180Hardwood Forest SoilMRTDSGFSAGLAIGLLVVVVVVLVLLATVPIGSGADAKPFINIRF
Ga0307471_10029711123300032180Hardwood Forest SoilMRTDSGFSAGLAIGLLIVVVVVLVLLATVPIGGGTDPKPLINIRF
Ga0307471_10231247223300032180Hardwood Forest SoilMQSNGGFSAGLAIGLLVLVLVVLVLLATVPIGGGTDAKPLINIRF

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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