Metagenome / Metatranscriptome Family F095227

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095227
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	52 residues
Representative Sequence	RPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIEFKHRF
Number of Associated Samples	73
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	10.00 %
% of genes near scaffold ends (potentially truncated)	8.57 %
% of genes from short scaffolds (< 2000 bps)	6.67 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (90.476 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (39.048 % of family members)
Environment Ontology (ENVO)	Unclassified (77.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.095 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 35.80% Coil/Unstructured: 64.20%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF01883	FeS_assembly_P	26.67
PF03626	COX4_pro	4.76
PF00510	COX3	2.86
PF00589	Phage_integrase	2.86
PF13472	Lipase_GDSL_2	1.90
PF09594	GT87	0.95
PF00202	Aminotran_3	0.95
PF00107	ADH_zinc_N	0.95
PF12390	Se-cys_synth_N	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3125	Heme/copper-type cytochrome/quinol oxidase, subunit 4	Energy production and conversion [C]	4.76
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	2.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
All Organisms	root	All Organisms	9.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
cellular organisms	root	All Organisms → cellular organisms	9.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	9.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	7.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.48 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005553\|Ga0066695_10376509	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	885	Open in IMG/M
3300010304\|Ga0134088_10198953	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	959	Open in IMG/M
3300010335\|Ga0134063_10187239	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	970	Open in IMG/M
3300010337\|Ga0134062_10155001	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1021	Open in IMG/M
3300012198\|Ga0137364_10092940	All Organisms → cellular organisms → Bacteria	2109	Open in IMG/M
3300012207\|Ga0137381_10663665	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	907	Open in IMG/M
3300012349\|Ga0137387_10462386	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	921	Open in IMG/M
3300012975\|Ga0134110_10153339	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	952	Open in IMG/M
3300026537\|Ga0209157_1023079	All Organisms → cellular organisms → Bacteria	3774	Open in IMG/M
3300026555\|Ga0179593_1232988	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	3350	Open in IMG/M

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	99.05%
Loam	Environmental → Terrestrial → Soil → Loam	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	49.52%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	39.05%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	27.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010104	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010117	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25383J37093_101783861	3300002560	Grasslands Soil	HLVDGYQYDFEDYVGLRRPNDMVDSDRIVSYDILRRPRRGWMAYVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0066674_103903311	3300005166	Soil	DMVDSDRIVSYDILRQPRRGWMAHVAYDEEYRGPVTGHSDVLRIELKRRF*
Ga0066680_106345811	3300005174	Soil	RIVSFDILRQPHRGWMAHVAYDEEYRGPITSRGDVLRIEFKHRF*
Ga0066680_106974581	3300005174	Soil	QVHLVDGYQYDFEDYVGLRRPNDMVDSDRIVSYDILRRPRRGWMAYVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0066685_109293461	3300005180	Soil	RIVSFDILRQPHRGWMAHVAYDEEYRGPVSSRGDVLRIEFKHRF*
Ga0066678_104448112	3300005181	Soil	GLRRPNDMVDSDRIVSYDILRRPRRGWMAYVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0066689_109074341	3300005447	Soil	KRPSDMVDSDRIVSYDILRQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066682_102257172	3300005450	Soil	SYDILRQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066697_103799451	3300005540	Soil	MVDSDRIVSYDILRQSRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066695_102760032	3300005553	Soil	GLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0066695_103765091	3300005553	Soil	GLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0066692_100215201	3300005555	Soil	QPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066692_102627172	3300005555	Soil	QIVDGYQYDFEDYVGLKRPSDMVDSDRIVSYDILRQPRRDWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066707_106736932	3300005556	Soil	IVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSDVLRIGLKRRF*
Ga0066699_101314634	3300005561	Soil	MVDSDRIVSYDILRQPRRGWMAHVAYDEEYRGPVSGHSDVLRIELKRRF*
Ga0066705_106681631	3300005569	Soil	PRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066694_105272001	3300005574	Soil	PKQVQIVDGYQYDFEDYVGLRRPKDMVDSDRIVSYDILRQPRRGWMAHVAYDEEYRGPVTGHSDVLRIELKRRF*
Ga0066694_105499151	3300005574	Soil	PRRGWMAHVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0066656_102823121	3300006034	Soil	RPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0066665_101704591	3300006796	Soil	RIVSYDILPQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066665_102528754	3300006796	Soil	YDILRRPRRGWMAFVAYDEEYRGPVTGRSEVLRLEFKHRF*
Ga0066665_107626342	3300006796	Soil	RPRRGWMAHVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0066659_100467671	3300006797	Soil	RQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0066659_106106681	3300006797	Soil	PHRGWMAHVAYDEEYRGPITSRGDVLRIEFKHRF*
Ga0066659_116702381	3300006797	Soil	DILPQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0099794_100602061	3300007265	Vadose Zone Soil	RIVSYDILRQPRRGWTAFIAYDEEYRDPLTGHSDVLRIELKRRF*
Ga0066710_1033395992	3300009012	Grasslands Soil	QIVDGYQYDFEDYVGLKRPSDMVDSDRIVSYDILAQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0066710_1034434291	3300009012	Grasslands Soil	RIVSYDILPQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0066710_1037243101	3300009012	Grasslands Soil	PNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSNVLRIELKHRF
Ga0099829_108615082	3300009038	Vadose Zone Soil	IHIVDGYQYDFEDYVGLRQPSDVVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDILRIEFKHRF*
Ga0066709_1021869782	3300009137	Grasslands Soil	GLRRPKDMVDSDRIVSYDILRQPRRGWMARVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0066709_1035648071	3300009137	Grasslands Soil	RDLVDSDHIVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSDIVRIGLKRRF*
Ga0127446_10205241	3300010104	Grasslands Soil	RRPRRGWTAFVAYDEEYRGPVTGRSEVLRLELKRRF*
Ga0127449_10499082	3300010117	Grasslands Soil	SYDILRRPRRGWTAFVAYDEEYRGPVTGRSEVLRLELKRRF*
Ga0134070_103554191	3300010301	Grasslands Soil	YDFEDYVGLKRPSDMVDSDRIVSYDILRQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0134082_101773692	3300010303	Grasslands Soil	DYVGLKRPSDMVDSDRIVSYDILRQPRRGWMARVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0134088_101989531	3300010304	Grasslands Soil	DILRQPRHGWTAFIAYDEEYRGPVTGHSDVLRIELKHRF*
Ga0134088_103567981	3300010304	Grasslands Soil	ILRQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0134088_104636631	3300010304	Grasslands Soil	VGLKRPSDMVDSDRIVSYDILRWPRRGWTAYVAYDEEYHGPVTGRSDILRIEFKHRF*
Ga0134088_104784832	3300010304	Grasslands Soil	RRPNDMVDSDRVVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSEVLRLELKHRF*
Ga0134086_100432354	3300010323	Grasslands Soil	VSYDILRRPRRGWMAFVAYDEEYRGPVTGRSEVLRLEFKHRF*
Ga0134064_102182231	3300010325	Grasslands Soil	EDYVGLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSDVLRIELKHRF
Ga0134111_100284091	3300010329	Grasslands Soil	VHLVDGYQYDFESYVGLRRPNDMVDSDRVVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSEVLRLELKHRF*
Ga0134111_102400861	3300010329	Grasslands Soil	DYVGLRRPRDLVDSDRIVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSDVLRIGLKRRF*
Ga0134080_100580112	3300010333	Grasslands Soil	YDFEDYVGLKRPSDMVDSDRIVSYDILPQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFNHRF*
Ga0134080_101944792	3300010333	Grasslands Soil	LRRPRRGWTAFVAYDEEYRGPVTGRSEVLRLELKRRF*
Ga0134063_101872391	3300010335	Grasslands Soil	HIVDGYQYDFEDYVGLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0134062_101550012	3300010337	Grasslands Soil	GLKRPSDLVDRDRIVSFDILRQPRRGWTAHVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0137392_111940902	3300011269	Vadose Zone Soil	YVGLRRPKDMVDSDRIVSYDILRQPRRGWMARVAYDEEYRGPVTGRSEVLRIELKRKF*
Ga0137388_100102341	3300012189	Vadose Zone Soil	EEYVGLRRPNDVVDRDRIVSYEVFRRPRRGWMASFAYDEEYRGPITGRSEVLRIELKRKF
Ga0137388_113993871	3300012189	Vadose Zone Soil	FENYVGLKRPSDMVDSDRIVSYGILRQPRRGWTTFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0137364_100929404	3300012198	Vadose Zone Soil	DRDRIVSFDILRQPHRGWMAHVAYDEEYRGPVSSRGDVLRIEFKHRF*
Ga0137363_111355992	3300012202	Vadose Zone Soil	DGYQYDFEDYVGLKRPSDMVDSDRIVSYDILRRPRRGWMAYVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0137381_106636651	3300012207	Vadose Zone Soil	VGLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSDVLRIELKHRF*
Ga0137387_103063301	3300012349	Vadose Zone Soil	RRPNDMVDSDRIVSYDILRQPRRGWMAYVAYDEEYRGPVTGRSDILRIELKHRF*
Ga0137387_104623861	3300012349	Vadose Zone Soil	RRPNDMVDSDRIVSYDILRQPRRGWMAYVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0137387_110609102	3300012349	Vadose Zone Soil	VSFDILRQPHRGWMAHVAYDEEYRGPVSSRGDVLRIEFKHRF*
Ga0137361_104384183	3300012362	Vadose Zone Soil	EDYVGLRRPKDMVDSDRIASYDILRQPRRDWTASIAYDEEYRGPLTGHSDILRIELKRRF
Ga0137361_110044951	3300012362	Vadose Zone Soil	EDYVGLRRPKDMVDSDRIASYDILRQPRRDWTASIAYDEEYCGPLTDHSDILRIELKRRF
Ga0137390_101499221	3300012363	Vadose Zone Soil	ILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIELKRRF*
Ga0137359_103297711	3300012923	Vadose Zone Soil	MVDSDRIVSYDILPQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0137359_109794022	3300012923	Vadose Zone Soil	YDILRRPRRGWMAYVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0137359_114436312	3300012923	Vadose Zone Soil	VDGYQYDFDDYVGLRRPNDMVDSDRVVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSEVLRLELKHRF*
Ga0137404_103695772	3300012929	Vadose Zone Soil	VDGYQYDFEDYVGLKRPSDMVDSDRIVSYDILRQPHRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0137404_103704891	3300012929	Vadose Zone Soil	DILRQPRRGWTAHVAYDEEYRGPVTGHSDILRIELRRRF*
Ga0137404_113104011	3300012929	Vadose Zone Soil	IVDGYQYDFEDYVGLKRPSDMVDSDRIVSYDILRQRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0137407_104526131	3300012930	Vadose Zone Soil	RRTNDMVDSDRIASYDILRQPRRGWTAQVAYDEEYRGPVTGHSDVLRIELRRRF*
Ga0134077_104439671	3300012972	Grasslands Soil	LRWPRRGWTAYVAYDEEYHGPVTGRSDILRIEFKHRF*
Ga0134110_101533391	3300012975	Grasslands Soil	QVHIVDGYQYDFEDYVGLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSNVLRIELKHRF*
Ga0134110_101679062	3300012975	Grasslands Soil	GLRRPNDMVDSDRIASYDILRQPRRGWTAHVAYDEEYRGPVTGHSDILRIELKHRF*
Ga0134087_103484091	3300012977	Grasslands Soil	DYVGLRRPKDMVDSDRIVSYDILRQPRRGWMADVAYDEEYRGPVSGHSDVLRIELKHRF*
Ga0134078_103740252	3300014157	Grasslands Soil	YVGLRRPNDMVDSDRIVSYDILRQPRRGWMAYVAYDEEYRGPVTGRSDILRIELKHRF*
Ga0137409_114600252	3300015245	Vadose Zone Soil	DGYQYDFEEYVGLRRPNDMVDSDRIASYDILRQPRRGWTAQVAYDEEYRGPVTGHSDILRIELKHRF*
Ga0134073_102197932	3300015356	Grasslands Soil	VENDRIVSYDILRRPRRGWTAFVAYDEEYRGPVTGRSEVLRLELKHRF*
Ga0134089_102849972	3300015358	Grasslands Soil	VDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0134085_102971561	3300015359	Grasslands Soil	YVGLRRPNDMVDSDRVVSYDILRRPRRGWMAFVAYDEEYRGPVTGRSEVLRLELKRRF*
Ga0134085_103175671	3300015359	Grasslands Soil	YVGLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIEFKHRF*
Ga0134085_103334851	3300015359	Grasslands Soil	MVDSDRIVSYDILRQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF*
Ga0134069_10454101	3300017654	Grasslands Soil	DLVDRDRIVSFDILRQPHRGWMAHVAYDEEYRGPVSSRGDVLRIEFKHRF
Ga0134112_103145752	3300017656	Grasslands Soil	DMVDSDRIVSYDILRQPRRGWMAYVAYDEEYRGPVTGRSDILRIELKHRF
Ga0134112_104014001	3300017656	Grasslands Soil	VQIVDGYQYDFEDYVGLKRPSDMVDSDRIVSYDILRQSRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0066655_107185522	3300018431	Grasslands Soil	LRRPNDMVDSDRIASYDILRQPRRGWMAFIAYDEEYRGPVTGRSDILRIEFKHPF
Ga0066667_106169931	3300018433	Grasslands Soil	RQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0066667_106655342	3300018433	Grasslands Soil	RPNDMVDSDRIVSYDILRQPRRGWMAYVAYDEEYRGPVTGRSDILRIELKHRF
Ga0066669_124142571	3300018482	Grasslands Soil	VGLRRPNDMVDNDRIASYDILRQPRRGWTAHVAYDEEYRGPVTGHSDILRIELKHRF
Ga0209237_10965071	3300026297	Grasslands Soil	LRQPRRGWTAFVAYDEEYRGPLASRSDVLRIEFKHRF
Ga0209468_10841663	3300026306	Soil	DYVGLKRPSDLIDRDRIVSFDILRQPHRGWMAHVAYDEEYRGPVSSRGDVLRIEFKHRF
Ga0209469_10314294	3300026307	Soil	RPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGHSDVLRIELKRRF
Ga0209155_10752741	3300026316	Soil	IVSYDILRQPRRGWMAYVAYDEEYRGPVTGRSDILRIELKHRF
Ga0209472_12284711	3300026323	Soil	MVDSDRIVSYDILRQPRRGWTAFVAYDEEYRGPLTNRSDVLRIEFKHRF
Ga0209801_13096841	3300026326	Soil	EDYVGLKRPSDMVDSDRIVSYDILRQSRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0209266_11177491	3300026327	Soil	YDILRQPRRGWMAHVAYDEEYRGPVTGHSDVLRIELKRRF
Ga0209802_11741513	3300026328	Soil	ILRQPRRGWTAFVAYDEEYRGPLASRSDVLRIEFKHRF
Ga0209473_12767512	3300026330	Soil	VDGYQYDFEDYVGLRRPKDMVDSDRIVSYDILRQPRRGWMARVAYDEEYRGPVTGRSDVLRIEFKHRF
Ga0209803_12018991	3300026332	Soil	EDYVGLRRPKDMVDSDRIVSYDILRQPRRGWMARVAYDEEYRGPVTGRSDVLRIEFKHRF
Ga0209690_12247303	3300026524	Soil	QPHRGWMAHVAYDEEYRGPITSRGDVLRIEFKHRF
Ga0209378_10850484	3300026528	Soil	RRPRRGWTAFVAYDEEYRGPVTGRSEVLRLELKRRF
Ga0209157_10230796	3300026537	Soil	DGYQYDFEEYVGLRRPNDMVDSDRIVSYDILRRPRRGWMAHVAYDEEYRGPVTGRSDVLRIEFKHRF
Ga0209157_11888221	3300026537	Soil	IVDGYQYAFEDYVGLKRPSDMVDSDRIVSYEIFRRPRRGWMAFVAYDEEYRGPVTGRSDILRIELKHRF
Ga0209056_100470451	3300026538	Soil	LRQPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0209056_101877291	3300026538	Soil	QPRRGWTAFVAYDEEYRGPLTSRSDVLRIEFKHRF
Ga0209805_10977644	3300026542	Soil	DSDRIVSFDILRRPRRGWMAHVAYDEEYRGPVSGHSDVLRIELKRRF
Ga0179593_12329882	3300026555	Vadose Zone Soil	MVDSDRIVSYDILRQPRRGWTAFIAYDEEYRGPVTSRSDILRIELKRRF
Ga0209689_11460201	3300027748	Soil	RIVSFDILRQPHRGWMAHVAYDEEYRGPVSSRGDVLRIEFKHRF
Ga0209689_11587381	3300027748	Soil	HIPDGYQYDFEDYVGLKRPSDLVDRDRIVSFDILRQPRRGWMAHVAYDEEYRGPVTSRGDVLRIEFKHRF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095227

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences