NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095230

Metagenome / Metatranscriptome Family F095230

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095230
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 41 residues
Representative Sequence MEVLMTVLILVLLAMLAAKWGVDSRPIDADRPTRWWPATPRD
Number of Associated Samples 83
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 80.00 %
% of genes near scaffold ends (potentially truncated) 22.86 %
% of genes from short scaffolds (< 2000 bps) 68.57 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (93.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(22.857 % of family members)
Environment Ontology (ENVO) Unclassified
(50.476 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.190 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 35.71%    β-sheet: 0.00%    Coil/Unstructured: 64.29%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF03466LysR_substrate 28.57
PF00126HTH_1 13.33
PF01547SBP_bac_1 12.38
PF07690MFS_1 8.57
PF05977MFS_3 3.81
PF01872RibD_C 2.86
PF13416SBP_bac_8 1.90
PF12847Methyltransf_18 0.95
PF13191AAA_16 0.95
PF00931NB-ARC 0.95
PF00196GerE 0.95
PF13302Acetyltransf_3 0.95
PF01663Phosphodiest 0.95
PF13424TPR_12 0.95
PF08281Sigma70_r4_2 0.95
PF11846Wzy_C_2 0.95
PF00211Guanylate_cyc 0.95
PF13189Cytidylate_kin2 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG2814Predicted arabinose efflux permease AraJ, MFS familyCarbohydrate transport and metabolism [G] 3.81
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 2.86
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 2.86
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.95

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms93.33 %
UnclassifiedrootN/A6.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459005|F1BAP7Q01ETVK9All Organisms → cellular organisms → Bacteria → Terrabacteria group506Open in IMG/M
3300000956|JGI10216J12902_116621615All Organisms → cellular organisms → Bacteria → Terrabacteria group552Open in IMG/M
3300002561|JGI25384J37096_10015220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2977Open in IMG/M
3300005172|Ga0066683_10022630All Organisms → cellular organisms → Bacteria3537Open in IMG/M
3300005175|Ga0066673_10118810All Organisms → cellular organisms → Bacteria1440Open in IMG/M
3300005178|Ga0066688_10112541All Organisms → cellular organisms → Bacteria → Terrabacteria group1674Open in IMG/M
3300005179|Ga0066684_10061999All Organisms → cellular organisms → Bacteria2184Open in IMG/M
3300005187|Ga0066675_10003962All Organisms → cellular organisms → Bacteria7057Open in IMG/M
3300005187|Ga0066675_10201051All Organisms → cellular organisms → Bacteria1400Open in IMG/M
3300005406|Ga0070703_10010679All Organisms → cellular organisms → Bacteria2589Open in IMG/M
3300005434|Ga0070709_10551082All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300005440|Ga0070705_100995652All Organisms → cellular organisms → Bacteria680Open in IMG/M
3300005445|Ga0070708_100073186All Organisms → cellular organisms → Bacteria3088Open in IMG/M
3300005451|Ga0066681_10248361All Organisms → cellular organisms → Bacteria1079Open in IMG/M
3300005468|Ga0070707_100004458All Organisms → cellular organisms → Bacteria13110Open in IMG/M
3300005468|Ga0070707_100402264All Organisms → cellular organisms → Bacteria1329Open in IMG/M
3300005518|Ga0070699_101192893All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300005536|Ga0070697_100442652All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300005536|Ga0070697_100517252All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300005540|Ga0066697_10006259All Organisms → cellular organisms → Bacteria5868Open in IMG/M
3300005540|Ga0066697_10041796All Organisms → cellular organisms → Bacteria2575Open in IMG/M
3300005540|Ga0066697_10444743All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium747Open in IMG/M
3300005545|Ga0070695_100747990All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300005546|Ga0070696_101072031All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium676Open in IMG/M
3300005552|Ga0066701_10029596All Organisms → cellular organisms → Bacteria2831Open in IMG/M
3300005555|Ga0066692_10034919All Organisms → cellular organisms → Bacteria2696Open in IMG/M
3300005561|Ga0066699_10159806All Organisms → cellular organisms → Bacteria1545Open in IMG/M
3300005566|Ga0066693_10297165All Organisms → cellular organisms → Bacteria → Terrabacteria group645Open in IMG/M
3300005568|Ga0066703_10081169All Organisms → cellular organisms → Bacteria1876Open in IMG/M
3300005569|Ga0066705_10265571All Organisms → cellular organisms → Bacteria1089Open in IMG/M
3300005586|Ga0066691_10752399All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300006032|Ga0066696_11053581Not Available517Open in IMG/M
3300006796|Ga0066665_10037911All Organisms → cellular organisms → Bacteria3230Open in IMG/M
3300006852|Ga0075433_10279239All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300006854|Ga0075425_102549601All Organisms → cellular organisms → Bacteria → Terrabacteria group565Open in IMG/M
3300007076|Ga0075435_100308602All Organisms → cellular organisms → Bacteria1354Open in IMG/M
3300007255|Ga0099791_10143419All Organisms → cellular organisms → Bacteria → Terrabacteria group1114Open in IMG/M
3300007258|Ga0099793_10027174All Organisms → cellular organisms → Bacteria2401Open in IMG/M
3300009012|Ga0066710_100289458All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2393Open in IMG/M
3300009012|Ga0066710_102362862All Organisms → cellular organisms → Bacteria → Terrabacteria group772Open in IMG/M
3300009012|Ga0066710_102872065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium677Open in IMG/M
3300009012|Ga0066710_103884646All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300009012|Ga0066710_104654289All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300009090|Ga0099827_10292493All Organisms → cellular organisms → Bacteria1377Open in IMG/M
3300009137|Ga0066709_103046283All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300009162|Ga0075423_10080711All Organisms → cellular organisms → Bacteria3388Open in IMG/M
3300009162|Ga0075423_10199033All Organisms → cellular organisms → Bacteria2101Open in IMG/M
3300009162|Ga0075423_11688574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium682Open in IMG/M
3300010322|Ga0134084_10426222All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium523Open in IMG/M
3300010335|Ga0134063_10040203All Organisms → cellular organisms → Bacteria2018Open in IMG/M
3300010335|Ga0134063_10175792All Organisms → cellular organisms → Bacteria1000Open in IMG/M
3300010337|Ga0134062_10019955All Organisms → cellular organisms → Bacteria2557Open in IMG/M
3300010373|Ga0134128_12337211All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium589Open in IMG/M
3300010396|Ga0134126_11078080All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300010398|Ga0126383_13112371All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300010895|Ga0138113_156975All Organisms → cellular organisms → Bacteria → Terrabacteria group518Open in IMG/M
3300012096|Ga0137389_10090124All Organisms → cellular organisms → Bacteria2416Open in IMG/M
3300012200|Ga0137382_10075014All Organisms → cellular organisms → Bacteria2178Open in IMG/M
3300012203|Ga0137399_10410536All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300012203|Ga0137399_11194768Not Available640Open in IMG/M
3300012204|Ga0137374_10239905All Organisms → cellular organisms → Bacteria → Terrabacteria group1528Open in IMG/M
3300012211|Ga0137377_10004486All Organisms → cellular organisms → Bacteria11001Open in IMG/M
3300012351|Ga0137386_10647512All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300012353|Ga0137367_10353960All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300012354|Ga0137366_10951254Not Available601Open in IMG/M
3300012355|Ga0137369_10012420All Organisms → cellular organisms → Bacteria8301Open in IMG/M
3300012355|Ga0137369_10029404All Organisms → cellular organisms → Bacteria5058Open in IMG/M
3300012355|Ga0137369_10635942All Organisms → cellular organisms → Bacteria → Terrabacteria group739Open in IMG/M
3300012361|Ga0137360_10488905All Organisms → cellular organisms → Bacteria1046Open in IMG/M
3300012382|Ga0134038_1092000Not Available729Open in IMG/M
3300012383|Ga0134033_1114122All Organisms → cellular organisms → Bacteria → Terrabacteria group566Open in IMG/M
3300012400|Ga0134048_1087903All Organisms → cellular organisms → Bacteria → Terrabacteria group621Open in IMG/M
3300012407|Ga0134050_1100138All Organisms → cellular organisms → Bacteria → Terrabacteria group501Open in IMG/M
3300012944|Ga0137410_11460614Not Available596Open in IMG/M
3300012977|Ga0134087_10009937All Organisms → cellular organisms → Bacteria3242Open in IMG/M
3300014166|Ga0134079_10544031All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300015245|Ga0137409_10589237All Organisms → cellular organisms → Bacteria941Open in IMG/M
3300018431|Ga0066655_10038397All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium2392Open in IMG/M
3300018431|Ga0066655_10480269All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300018431|Ga0066655_10946923Not Available591Open in IMG/M
3300018433|Ga0066667_10437823All Organisms → cellular organisms → Bacteria1065Open in IMG/M
3300018433|Ga0066667_10697461All Organisms → cellular organisms → Bacteria852Open in IMG/M
3300018468|Ga0066662_10001046All Organisms → cellular organisms → Bacteria12462Open in IMG/M
3300018468|Ga0066662_10125357All Organisms → cellular organisms → Bacteria1885Open in IMG/M
3300018482|Ga0066669_10125944All Organisms → cellular organisms → Bacteria1835Open in IMG/M
3300025885|Ga0207653_10221015Not Available719Open in IMG/M
3300025922|Ga0207646_10008211All Organisms → cellular organisms → Bacteria10491Open in IMG/M
3300025922|Ga0207646_10086319All Organisms → cellular organisms → Bacteria2807Open in IMG/M
3300026297|Ga0209237_1103982All Organisms → cellular organisms → Bacteria1237Open in IMG/M
3300026298|Ga0209236_1001334All Organisms → cellular organisms → Bacteria14830Open in IMG/M
3300026313|Ga0209761_1032784All Organisms → cellular organisms → Bacteria3096Open in IMG/M
3300026316|Ga0209155_1013794All Organisms → cellular organisms → Bacteria3492Open in IMG/M
3300026322|Ga0209687_1199096All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium619Open in IMG/M
3300026343|Ga0209159_1179541All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium750Open in IMG/M
3300026530|Ga0209807_1022782All Organisms → cellular organisms → Bacteria3046Open in IMG/M
3300026548|Ga0209161_10328694All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium702Open in IMG/M
3300026552|Ga0209577_10173735All Organisms → cellular organisms → Bacteria1676Open in IMG/M
3300027882|Ga0209590_10758592All Organisms → cellular organisms → Bacteria → Terrabacteria group618Open in IMG/M
3300028536|Ga0137415_10006905All Organisms → cellular organisms → Bacteria11264Open in IMG/M
3300031720|Ga0307469_10573147All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300031740|Ga0307468_100104788All Organisms → cellular organisms → Bacteria1693Open in IMG/M
3300031740|Ga0307468_101153806All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium695Open in IMG/M
3300032180|Ga0307471_100698685All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1179Open in IMG/M
3300032180|Ga0307471_103549158All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300032205|Ga0307472_102509563All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium524Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil22.86%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil19.05%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil17.14%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere13.33%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil10.48%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.71%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.71%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.90%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.95%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.95%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459005Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005540Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146EnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005566Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010895Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012355Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012382Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012383Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012400Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012407Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_2 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014166Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300018431Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026297Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026313Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026316Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)EnvironmentalOpen in IMG/M
3300026322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)EnvironmentalOpen in IMG/M
3300026343Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E41_060459402170459005Grass SoilMEVLMTVLILALLAMLAEKLGADSRPLDIDRPTRWWPATPRD
JGI10216J12902_11662161523300000956SoilNTQCMEVLMALLMLVLLALCAWRWGVDSRPSDADRPTRWWPATPRD*
JGI25384J37096_1001522023300002561Grasslands SoilMELVMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0066683_1002263063300005172SoilMEVFMTVLVFVLLALCAARWGVDSRPVDADRATRWWPATPRE*
Ga0066673_1011881033300005175SoilMEVLMSLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0066688_1011254113300005178SoilLIAVMLLLLLALCAGRWGADSRPQDVDRATPWWPATPRE*
Ga0066684_1006199923300005179SoilMEVLMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD*
Ga0066675_1000396223300005187SoilVEILMAVLVLLLLALCAGHWGADSRPQDVDRATPWWPATPRE*
Ga0066675_1020105123300005187SoilMEVLMTVLIMVLLAMLAAGWGADSRPLDIDRPTPWWPATPRD*
Ga0070703_1001067913300005406Corn, Switchgrass And Miscanthus RhizosphereMEVLMALLILALIVLCTWRWGVDSRPIDADRATRWWPATPRD*
Ga0070709_1055108213300005434Corn, Switchgrass And Miscanthus RhizosphereMEVLMSLLIVVLLVMCAARWGADSRPIDADRPTRWWPATPREN*
Ga0070705_10099565223300005440Corn, Switchgrass And Miscanthus RhizosphereMCMELLMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0070708_10007318643300005445Corn, Switchgrass And Miscanthus RhizosphereMEFLMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0066681_1024836113300005451SoilMEVLMSLLIVLLLVMCAARWGADSRPVDADRPTRWWPATPRED
Ga0070707_10000445843300005468Corn, Switchgrass And Miscanthus RhizosphereMEVLVAVLMFVLLALLTARWGVDSRPIDAERPTRWWPATPRD*
Ga0070707_10040226423300005468Corn, Switchgrass And Miscanthus RhizosphereMEVLMALLILALLVVCAWRWGVDSRPIDADRATRWWPATPRD*
Ga0070699_10119289323300005518Corn, Switchgrass And Miscanthus RhizosphereMELLMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0070697_10044265213300005536Corn, Switchgrass And Miscanthus RhizosphereMTVLLLVLVLVLLAMAAAKWGVDSRPLDIDRPTPWWPATPRD*
Ga0070697_10051725223300005536Corn, Switchgrass And Miscanthus RhizosphereMEVLMAVLMFVLLALLTARWGVDSRPIDAERPTRWWPAIPRD*
Ga0066697_1000625943300005540SoilMAVLVLLLLALCAGHWGADSRPQDVDRATPWWPATPRE*
Ga0066697_1004179623300005540SoilMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0066697_1044474323300005540SoilMEVLMTVLILVLLAMLAARWGVDSRPLDIDRPTPWWPATPRD*
Ga0070695_10074799013300005545Corn, Switchgrass And Miscanthus RhizosphereMEVLMSLLIVVLLAMCAARWGADSRPIDADRPTRWWPATPREN*
Ga0070696_10107203113300005546Corn, Switchgrass And Miscanthus RhizosphereMEVLMTVLILVLLAMLAAKWGVDSRPLDADRPTRWWPATPRD*
Ga0066701_1002959623300005552SoilMAVLALLLLALCAGQWGADSRAQDVDRATPWWPATPRE*
Ga0066692_1003491943300005555SoilMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD*
Ga0066699_1015980623300005561SoilMAVLLLILLAMVAVRWGVDSRPVDAERPTRWWPATPRD*
Ga0066693_1029716523300005566SoilVLMTVLILVLLAMLAEGWGAHSRPLDIDRPTPWWPATPRD*
Ga0066703_1008116913300005568SoilFDPGKPICMELVMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0066705_1026557123300005569SoilMSLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0066691_1075239923300005586SoilMEALMAILLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD*
Ga0066696_1105358113300006032SoilMTVLILVLLAMLAEGWGADSRPLDIDRPTPWWPATPRD*
Ga0066665_1003791123300006796SoilMAILLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD*
Ga0075433_1027923923300006852Populus RhizosphereMTVLVALALVMLVARWGVDSRLPDADRATPWWPATPRD*
Ga0075425_10254960123300006854Populus RhizosphereLKPMEVLMTVLILVVLAMFAAKWGVDSRPLDTDRATPWWPATPRD*
Ga0075435_10030860223300007076Populus RhizosphereMTVLILVVLAMFAAKWGVDSRPLDTDRATPWWPATPRD*
Ga0099791_1014341923300007255Vadose Zone SoilMEVLVALLIAILLALLAVRWGVDSRPADVDRTTRWWPATPRD*
Ga0099793_1002717433300007258Vadose Zone SoilMEVLMVLLLTLLLAVLAVRWGVDSRPVDAERATRWWPATPRD*
Ga0066710_10028945823300009012Grasslands SoilMTVLIMVLLAMLAAGWGADSRPLDIDRPTPWWPATPRD
Ga0066710_10236286223300009012Grasslands SoilMTVLMLVLLAMLAAGWGVDSRPLDIDRPTPWWPATPRD
Ga0066710_10287206523300009012Grasslands SoilGKTEVMEALMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD
Ga0066710_10388464613300009012Grasslands SoilMEVFMTVLVFVLLALCAARWGVDSRPVDADRATRWWPATPRE
Ga0066710_10465428913300009012Grasslands SoilVEILIAVMLLLLLALCAGRWGADSRPQDVDRATPWWP
Ga0099827_1029249323300009090Vadose Zone SoilMEVLMSLLILVLVAMSAARWGADSRPIDADRPTHWWPATPRD*
Ga0066709_10304628323300009137Grasslands SoilMEVLMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPA
Ga0075423_1008071133300009162Populus RhizosphereMEVFMSVLLFVLLALCAARWGVDSRPIDADRATRWWPATPRD*
Ga0075423_1019903343300009162Populus RhizosphereMEVLMTVLVALALVMLVARWGVDSRLPDADRATPWWPATPRD*
Ga0075423_1168857423300009162Populus RhizosphereMEVLMTVLILVLLAMGAAKWGVDSRPLDIDRPTRWWPATPRD*
Ga0134084_1042622213300010322Grasslands SoilMEVLMTVLILVLLAMLAEGWGADSRPLDIDRPTPWWPATPRD*
Ga0134063_1004020333300010335Grasslands SoilVMEALMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD*
Ga0134063_1017579213300010335Grasslands SoilMEIVMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0134062_1001995533300010337Grasslands SoilMAVLVLLLLALCAGQWGADSRAQDVDRATPWWPATPRE*
Ga0134128_1233721113300010373Terrestrial SoilMEVLMTVLVLGVLAIVAATWGVDSRPLDTERPTPWWPATPRD*
Ga0134126_1107808023300010396Terrestrial SoilMALLMLVLLALCAARWGVDSRPTDADRATSWWPATPRD*
Ga0126383_1311237113300010398Tropical Forest SoilMEVFMAVLVMLLLALCAALWAVDSRPADVERATRWWPATPRD*
Ga0138113_15697523300010895Grasslands SoilVLLLLALCAGQWGADSRAQDVDRATPWWPATPRE*
Ga0137389_1009012433300012096Vadose Zone SoilMEVLMVLLLTLLLAVLAVRWGVDSRPIDAERATRWWPATPRD*
Ga0137382_1007501423300012200Vadose Zone SoilMEVLMSLLILVLVAMCAARWGADSRPIDADRPTRWWPATPPD*
Ga0137399_1041053623300012203Vadose Zone SoilMEVLMVLLLTLLLAVLAVRWGVDSRPVDAERATGWWPATPRD*
Ga0137399_1119476823300012203Vadose Zone SoilMEVLMAVLVIVLLVMLSARWGVDSRPTDADRPTSWWPATPRD*
Ga0137374_1023990523300012204Vadose Zone SoilMEVLITVLILVLLATLAAKFGADSRPLDIDRPTRWWPATPRD*
Ga0137377_1000448653300012211Vadose Zone SoilMAVLALLLLALCAGHWGADSRPQDVDRATPWWPATPRE*
Ga0137386_1064751223300012351Vadose Zone SoilGKPICMEIVMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0137367_1035396023300012353Vadose Zone SoilMEVLMAALILVLVAMLAAAWGVDSRPTDAERATRWWPATPRD*
Ga0137366_1095125423300012354Vadose Zone SoilLMTVLILVLLATLAANLGADSRPLDIDRPTRWWPAAPRD*
Ga0137369_1001242043300012355Vadose Zone SoilMEVLMAALILVLVAMLAAAWGADSRPTDAERATRWWPATPRD*
Ga0137369_1002940423300012355Vadose Zone SoilMELLMALLMLVLLALCAGRWGVDSRPTDADRPTRWWPATPQD*
Ga0137369_1063594223300012355Vadose Zone SoilMELLMALLMLVLLTLCAGRWGVDSRPTDADRPTRWWPATPRD*
Ga0137360_1048890513300012361Vadose Zone SoilMDVASEFDPGKTDGMEVLMSLLILVLVAMSAARWGADSRPIDADRPTHWWPATPRD*
Ga0134038_109200013300012382Grasslands SoilLVIVLLVLLSARWGVDSRPADADRPTSWWPATPRD*
Ga0134033_111412223300012383Grasslands SoilGVEILMAVLVLLLLALCAGHWGADSRPQDVDRATPWWPATPRE*
Ga0134048_108790323300012400Grasslands SoilLVLLLLALCAGHWGADSRPQDVDRATPWWPATPRE*
Ga0134050_110013813300012407Grasslands SoilLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0137410_1146061413300012944Vadose Zone SoilTQVMEVLMAVLVIVLLVMLSVRWGVDSRPTDADRPTSWWPATPRD*
Ga0134087_1000993723300012977Grasslands SoilMAVLLLLLLALCAGRWSVDSRPQDVDRATPWWPATPRE*
Ga0134079_1054403123300014166Grasslands SoilANAMEVLMSLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD*
Ga0137409_1058923723300015245Vadose Zone SoilMEVLMAVLILILLALLAGRWGVDSRPVDAERPTRWFAATPRD*
Ga0066655_1003839743300018431Grasslands SoilMAVLALLLLALCAGQWGADSRAQDVDRATPWWPATPRE
Ga0066655_1048026913300018431Grasslands SoilMEVLMTVLIMVLLAMLAAGWGADSRPLDIDRPTPWWPATPRD
Ga0066655_1094692323300018431Grasslands SoilMTVLILVLLAMLAARWGVDSRPLDIDRPTPWWPATPRD
Ga0066667_1043782323300018433Grasslands SoilMTLLILVLVAMCAARWGADSRPIDADRPTRWWPAT
Ga0066667_1069746123300018433Grasslands SoilMSLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD
Ga0066662_10001046113300018468Grasslands SoilMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD
Ga0066662_1012535723300018468Grasslands SoilMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD
Ga0066669_1012594433300018482Grasslands SoilMEVLMSLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD
Ga0207653_1022101523300025885Corn, Switchgrass And Miscanthus RhizosphereMALLILALIVLCTWRWGVDSRPIDADRATRWWPATPRD
Ga0207646_1000821183300025922Corn, Switchgrass And Miscanthus RhizosphereMEVLVAVLMFVLLALLTARWGVDSRPIDAERPTRWWPATPRD
Ga0207646_1008631933300025922Corn, Switchgrass And Miscanthus RhizosphereMALLILALLVLCTWRWGVDSRPIDADRATRWWPATPRD
Ga0209237_110398223300026297Grasslands SoilMEALMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD
Ga0209236_1001334153300026298Grasslands SoilMELVMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD
Ga0209761_103278423300026313Grasslands SoilMELLMTLLILVLVAMCAARWGADSRPIDADRPTRWWPATPRD
Ga0209155_101379443300026316SoilMAVLVLLLLALCAGHWGADSRPQDVDRATPWWPATPRE
Ga0209687_119909623300026322SoilAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD
Ga0209159_117954123300026343SoilMEVLMTVLILVLLAMLAARWGVDSRPLDIDRPTPWWPATPRD
Ga0209807_102278243300026530SoilMAVLALLLLALCAGQWGADSRPQDVDRATPWWPATPRE
Ga0209161_1032869413300026548SoilKTEVMEVLMAVLLLILLAMLAMRWGVDSRPVDAERPTRWWPATPRD
Ga0209577_1017373533300026552SoilMAVLLLILLAMVAVRWGVDSRPVDAERPTRWWPATPRD
Ga0209590_1075859223300027882Vadose Zone SoilGNTESMEVLMAVLILVLAAMFAARWGVDSRPVDADRATRWWPAAPRD
Ga0137415_1000690593300028536Vadose Zone SoilMVLLLTLLLAVLAVRWGVDSRPVDAERATRWWPATPRD
Ga0307469_1057314723300031720Hardwood Forest SoilMEVLMTVLILVLLAMLAAKWGVDSRPIDADRPTRWWPATPRD
Ga0307468_10010478823300031740Hardwood Forest SoilMTVLVALALVVLAAKWGVDSRPADADRATPWWPATPRD
Ga0307468_10115380613300031740Hardwood Forest SoilMTVLILVLLAMLAAKWGVDSRPLDADRPTRWWPATPRD
Ga0307471_10069868523300032180Hardwood Forest SoilMEVLMAVLMFVLLALLTARWGVDSRPIDAQRPTRWWPATPRD
Ga0307471_10354915813300032180Hardwood Forest SoilMEVLMSLLIVVLLAMCAARWGADSRPIDADRPTRWWPATPREN
Ga0307472_10250956313300032205Hardwood Forest SoilMEVLMTILILVLLAMCAAKWGVDSRPLDTDRATRWWPATPRD

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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