Metagenome / Metatranscriptome Family F095285

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095285
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	61 residues
Representative Sequence	CRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Number of Associated Samples	88
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	9.52 %
% of genes near scaffold ends (potentially truncated)	54.29 %
% of genes from short scaffolds (< 2000 bps)	90.48 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (56.190 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (20.952 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.762 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.44% β-sheet: 12.22% Coil/Unstructured: 63.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF11239	DUF3040	8.57
PF05235	CHAD	1.90
PF08282	Hydrolase_3	1.90
PF08044	DUF1707	0.95
PF03976	PPK2	0.95
PF02036	SCP2	0.95
PF00196	GerE	0.95
PF09015	NgoMIV_restric	0.95
PF13847	Methyltransf_31	0.95
PF13426	PAS_9	0.95
PF13333	rve_2	0.95
PF01527	HTH_Tnp_1	0.95
PF01230	HIT	0.95
PF01906	YbjQ_1	0.95
PF01467	CTP_transf_like	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	1.90
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	1.90
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	1.90
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	1.90
COG3025	Inorganic triphosphatase YgiF, contains CYTH and CHAD domains	Inorganic ion transport and metabolism [P]	1.90
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	1.90
COG5607	CHAD domain, binds inorganic polyphosphates	Function unknown [S]	1.90
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.95
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
All Organisms	root	All Organisms	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
cellular organisms	root	All Organisms → cellular organisms	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	40.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	33.33 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.43 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.86 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.86 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.43 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.86 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.90 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.43 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.90 %
Gandjariella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella	0.95 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.95 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.95 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.95 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.43 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.90 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.95 %
Gandjariella thermophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella → Gandjariella thermophila	0.95 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.95 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.95 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	56.19 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.43 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.90 %
Streptomyces sp. WAC07061	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WAC07061	0.95 %
Gandjariella thermophila	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella → Gandjariella thermophila	0.95 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.95 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.95 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.95 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.95 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459015\|G14TP7Y01BH9I0	Not Available	616	Open in IMG/M
3300000956\|JGI10216J12902_104545604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1053	Open in IMG/M
3300004472\|Ga0068974_1357172	Not Available	576	Open in IMG/M
3300004475\|Ga0068969_1025958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	821	Open in IMG/M
3300004479\|Ga0062595_101921590	Not Available	568	Open in IMG/M
3300004594\|Ga0068976_1241250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1077	Open in IMG/M
3300004620\|Ga0068957_1465693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1070	Open in IMG/M
3300005329\|Ga0070683_100788708	Not Available	911	Open in IMG/M
3300005330\|Ga0070690_100926578	Not Available	683	Open in IMG/M
3300005332\|Ga0066388_104304168	Not Available	725	Open in IMG/M
3300005335\|Ga0070666_10991591	Not Available	623	Open in IMG/M
3300005435\|Ga0070714_100496623	Not Available	1163	Open in IMG/M
3300005458\|Ga0070681_10561212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1055	Open in IMG/M
3300005526\|Ga0073909_10208757	Not Available	848	Open in IMG/M
3300005614\|Ga0068856_101121138	Not Available	804	Open in IMG/M
3300005616\|Ga0068852_100522379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1185	Open in IMG/M
3300005842\|Ga0068858_101282776	Not Available	721	Open in IMG/M
3300005843\|Ga0068860_101459255	Not Available	706	Open in IMG/M
3300006028\|Ga0070717_10358017	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1306	Open in IMG/M
3300006755\|Ga0079222_12478050	Not Available	521	Open in IMG/M
3300006806\|Ga0079220_10160904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1251	Open in IMG/M
3300006854\|Ga0075425_101294602	Not Available	826	Open in IMG/M
3300006904\|Ga0075424_101222166	Not Available	800	Open in IMG/M
3300006954\|Ga0079219_10505654	Not Available	848	Open in IMG/M
3300006954\|Ga0079219_12142580	Not Available	536	Open in IMG/M
3300009101\|Ga0105247_10812659	Not Available	714	Open in IMG/M
3300009520\|Ga0116214_1090616	Not Available	1122	Open in IMG/M
3300009523\|Ga0116221_1282171	Not Available	718	Open in IMG/M
3300009698\|Ga0116216_10276023	Not Available	1025	Open in IMG/M
3300009700\|Ga0116217_10593983	Not Available	690	Open in IMG/M
3300010164\|Ga0063827_131186	Not Available	523	Open in IMG/M
3300010361\|Ga0126378_12806691	Not Available	556	Open in IMG/M
3300010362\|Ga0126377_13209116	Not Available	528	Open in IMG/M
3300010373\|Ga0134128_11573656	Not Available	723	Open in IMG/M
3300010379\|Ga0136449_100359774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2609	Open in IMG/M
3300010379\|Ga0136449_100655145	All Organisms → cellular organisms → Bacteria	1774	Open in IMG/M
3300010379\|Ga0136449_101208924	Not Available	1189	Open in IMG/M
3300010379\|Ga0136449_101648955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	970	Open in IMG/M
3300010379\|Ga0136449_103843374	Not Available	564	Open in IMG/M
3300010379\|Ga0136449_103923515	Not Available	557	Open in IMG/M
3300010396\|Ga0134126_12254141	Not Available	594	Open in IMG/M
3300011068\|Ga0138599_1129435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	829	Open in IMG/M
3300011088\|Ga0138576_1122718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1805	Open in IMG/M
3300012481\|Ga0157320_1014802	Not Available	654	Open in IMG/M
3300012515\|Ga0157338_1073756	Not Available	538	Open in IMG/M
3300012985\|Ga0164308_10779832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	832	Open in IMG/M
3300012988\|Ga0164306_10557624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	891	Open in IMG/M
3300013105\|Ga0157369_11046213	Not Available	835	Open in IMG/M
3300013105\|Ga0157369_11128504	Not Available	801	Open in IMG/M
3300014325\|Ga0163163_10457734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1336	Open in IMG/M
3300014497\|Ga0182008_10631313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	605	Open in IMG/M
3300015373\|Ga0132257_100093161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3454	Open in IMG/M
3300017822\|Ga0187802_10075119	Not Available	1256	Open in IMG/M
3300017823\|Ga0187818_10321866	Not Available	681	Open in IMG/M
3300017926\|Ga0187807_1024941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1847	Open in IMG/M
3300017926\|Ga0187807_1097540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	923	Open in IMG/M
3300017926\|Ga0187807_1161180	Not Available	719	Open in IMG/M
3300017928\|Ga0187806_1088710	Not Available	977	Open in IMG/M
3300017932\|Ga0187814_10280978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	635	Open in IMG/M
3300017937\|Ga0187809_10418411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	513	Open in IMG/M
3300017959\|Ga0187779_10018059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4012	Open in IMG/M
3300017961\|Ga0187778_10405584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Gandjariella → Gandjariella thermophila	895	Open in IMG/M
3300017961\|Ga0187778_10995954	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	580	Open in IMG/M
3300017973\|Ga0187780_11260671	Not Available	543	Open in IMG/M
3300017974\|Ga0187777_10129720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1673	Open in IMG/M
3300017974\|Ga0187777_10806577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300017974\|Ga0187777_11109459	Not Available	576	Open in IMG/M
3300018001\|Ga0187815_10425819	Not Available	566	Open in IMG/M
3300018086\|Ga0187769_10476904	Not Available	941	Open in IMG/M
3300021860\|Ga0213851_1600903	Not Available	616	Open in IMG/M
3300025898\|Ga0207692_10441967	Not Available	817	Open in IMG/M
3300025898\|Ga0207692_10670614	Not Available	671	Open in IMG/M
3300025921\|Ga0207652_10982895	Not Available	742	Open in IMG/M
3300025928\|Ga0207700_10133273	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2032	Open in IMG/M
3300025929\|Ga0207664_10033376	All Organisms → cellular organisms → Bacteria	3953	Open in IMG/M
3300025934\|Ga0207686_11308234	Not Available	595	Open in IMG/M
3300025941\|Ga0207711_10135286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2213	Open in IMG/M
3300025949\|Ga0207667_12077389	Not Available	527	Open in IMG/M
3300025981\|Ga0207640_11890709	Not Available	540	Open in IMG/M
3300026035\|Ga0207703_10110088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2349	Open in IMG/M
3300026075\|Ga0207708_11643595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300026116\|Ga0207674_10053086	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4132	Open in IMG/M
3300026118\|Ga0207675_100147528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2237	Open in IMG/M
3300027472\|Ga0207449_102242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300027662\|Ga0208565_1081810	Not Available	990	Open in IMG/M
3300027725\|Ga0209178_1425885	Not Available	508	Open in IMG/M
3300028379\|Ga0268266_10887525	Not Available	862	Open in IMG/M
3300028445\|Ga0189899_109190	Not Available	523	Open in IMG/M
3300030659\|Ga0316363_10068595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1635	Open in IMG/M
3300030707\|Ga0310038_10153030	Not Available	1145	Open in IMG/M
3300032074\|Ga0308173_11327968	Not Available	674	Open in IMG/M
3300032160\|Ga0311301_10962871	Not Available	1136	Open in IMG/M
3300032770\|Ga0335085_10484970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1414	Open in IMG/M
3300032783\|Ga0335079_10261634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. WAC07061	1899	Open in IMG/M
3300032783\|Ga0335079_11894678	Not Available	577	Open in IMG/M
3300032805\|Ga0335078_10092408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4385	Open in IMG/M
3300032805\|Ga0335078_10492093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	1578	Open in IMG/M
3300032805\|Ga0335078_10807843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1142	Open in IMG/M
3300032828\|Ga0335080_10791929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	980	Open in IMG/M
3300032828\|Ga0335080_12208257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300032892\|Ga0335081_12081614	Not Available	602	Open in IMG/M
3300032898\|Ga0335072_10401119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1472	Open in IMG/M
3300032955\|Ga0335076_10422210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1217	Open in IMG/M
3300033475\|Ga0310811_10321026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	1764	Open in IMG/M
3300033803\|Ga0314862_0026534	Not Available	1165	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.14%
Host-Associated	Host-Associated	21.90%
Engineered	Engineered	0.95%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.62%
Plants	Host-Associated → Plants	21.90%
Aquatic	Environmental → Aquatic	9.52%
Solid Waste	Engineered → Solid Waste	0.95%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.62%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.43%
Freshwater	Environmental → Aquatic → Freshwater	9.52%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.52%
Roots	Host-Associated → Plants → Roots	0.95%
Grass	Engineered → Solid Waste → Grass	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	19.05%
Loam	Environmental → Terrestrial → Soil → Loam	11.43%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.48%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.62%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.90%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.95%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Composting	Engineered → Solid Waste → Grass → Composting	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.57%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	19.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.95%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.95%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	20.95%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	10.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.57%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	7.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.76%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.76%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.86%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.90%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.90%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.95%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004472	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 71 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004475	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004594	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 73 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004620	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 49 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010164	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 61 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011068	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 67 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011088	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 62 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012481	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.1.yng.040610	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027472	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-HINK07-D (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028445	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 61 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033803	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_10	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4PV_02415360	2170459015	Switchgrass, Maize And Mischanthus Litter	MHCRCRFRVGRPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALTADLIHELGYLEVTGRWPAD
JGI10216J12902_1045456042	3300000956	Soil	VGRPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLIRELGYLEVTGCWPAD*
Ga0068974_13571722	3300004472	Peatlands Soil	VGEIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDAA*
Ga0068969_10259583	3300004475	Peatlands Soil	GEIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDAA*
Ga0062595_1019215901	3300004479	Soil	PGEIAACGCGFWWRVSKRGRWYAISKRRAFRALTADLIRELGYLEVTGRWPAD*
Ga0068976_12412501	3300004594	Peatlands Soil	EIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDAA*
Ga0068957_14656932	3300004620	Peatlands Soil	PVWRMRCLCSFRAGRVGEIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDAA*
Ga0070683_1007887082	3300005329	Corn Rhizosphere	MHCRCRFRAGRPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0070690_1009265782	3300005330	Switchgrass Rhizosphere	MHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLIRELGYLEVTGRWPA
Ga0066388_1043041682	3300005332	Tropical Forest Soil	VPVKAGRPGHIAACECRFWWRVGKGGRWYAISRRHAFRALLPELRRAVGHFEATGSWPTE
Ga0070666_109915911	3300005335	Switchgrass Rhizosphere	MHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVT
Ga0070714_1004966232	3300005435	Agricultural Soil	MHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0070681_105612121	3300005458	Corn Rhizosphere	AGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN*
Ga0073909_102087572	3300005526	Surface Soil	MHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAT*
Ga0068856_1011211382	3300005614	Corn Rhizosphere	MHCRCRFRVGRPGEIAACGCGFWWRVSKRGRWYGISKRRAFRALMPGLIRELGYLEVTGRWPAD*
Ga0068852_1005223792	3300005616	Corn Rhizosphere	MHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN*
Ga0068858_1012827762	3300005842	Switchgrass Rhizosphere	PSLPVWRMHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN*
Ga0068860_1014592551	3300005843	Switchgrass Rhizosphere	VWRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0070717_103580171	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	CRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0079222_124780501	3300006755	Agricultural Soil	LPSCAPSPPVWRMHCRCRFRAGQPEEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0079220_101609043	3300006806	Agricultural Soil	MHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISRRRAFRALMPGLMLELGYLEVTGRWPAN*
Ga0075425_1012946022	3300006854	Populus Rhizosphere	MHCRCRFRAGRPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAD*
Ga0075424_1012221661	3300006904	Populus Rhizosphere	MHCRCRFKVGRPGEIAACGCGFLWRVSKRGRWYAISKRRAFRALIPGLIRELGYLEVTGRWPAD*
Ga0079219_105056541	3300006954	Agricultural Soil	VWRMHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN*
Ga0079219_121425801	3300006954	Agricultural Soil	SPPVWRMHCRCRFRAGQPEEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0105247_108126591	3300009101	Switchgrass Rhizosphere	IAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0116214_10906163	3300009520	Peatlands Soil	MRCLCSFRAGQAGEIAACGCRFWWRVGKRGRWHAISRRRALGVLARELRRELDYFDVTGNWPTG*
Ga0116221_12821712	3300009523	Peatlands Soil	MRCLCSFRAGQAGEIAACGCRFWWRVGKRGRWHAISRRRALGVLARELRRELDYFDVTGNWPAG*
Ga0116216_102760233	3300009698	Peatlands Soil	RAGKAGEIAACGCRFWWRVGTRGRWYAISRRRALRVLARELRRELDYFDVTGNWPAG*
Ga0116217_105939831	3300009700	Peatlands Soil	GEIAACGCRFWWRVGKRGRWYAISRRRALRVLARELRRELDYFDVTGNWPAG*
Ga0063827_1311861	3300010164	Peatlands Soil	SFRAGRVGEIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDAA*
Ga0126378_128066911	3300010361	Tropical Forest Soil	MHCLCSFRAGKPGEIAACECRCWWRVSRRGRWYAISRRRAFHALLPELRRALSYFEK
Ga0126377_132091161	3300010362	Tropical Forest Soil	VGRPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALTADLLRELDYLEVTGRWPAA*
Ga0134128_115736561	3300010373	Terrestrial Soil	RCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0136449_1003597745	3300010379	Peatlands Soil	MRCLCSFRAGKAGEIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELDYFNVTGNWPAG*
Ga0136449_1006551454	3300010379	Peatlands Soil	SFRAGKVGEIAACGCRFWWRVGKRGRWYAISRRRALRVLARELRRELDYFDVTGNWPAG*
Ga0136449_1012089241	3300010379	Peatlands Soil	EIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELRRELDYFDVTGNWPTG*
Ga0136449_1016489552	3300010379	Peatlands Soil	MLVQGWQGGEIAACECRSWWRAGKRGRWFAISKRRAFRALLPELMRELSYFEVTGRWPTDAA*
Ga0136449_1038433741	3300010379	Peatlands Soil	MRCLCSFRAGKAGKIAACGCRFWWRVGTRGRWYAISRRGALRVLARELRRELDYFDVTGNWPAG*
Ga0136449_1039235151	3300010379	Peatlands Soil	GKAGEIAACGCRLWWRVGTRGRWYAISRRRALRVLTRELRRQLDYFDVTGNWPAG*
Ga0134126_122541411	3300010396	Terrestrial Soil	MHCRCRFRAGKPGEIATCGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLE
Ga0138599_11294351	3300011068	Peatlands Soil	RAGRVGEIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDAA*
Ga0138576_11227182	3300011088	Peatlands Soil	MRCLCSFRAGKAGEIAACGCRFWWRVGKRGRWHAISRRRALGVLARELRRELDYFDVTGNWPAG*
Ga0157320_10148021	3300012481	Arabidopsis Rhizosphere	MHCRCRFRAGRPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEV
Ga0157338_10737561	3300012515	Arabidopsis Rhizosphere	GEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0164308_107798321	3300012985	Soil	MHCRCRFRAGKPGEIATCGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0164306_105576243	3300012988	Soil	WRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAT*
Ga0157369_110462131	3300013105	Corn Rhizosphere	PSLPVWRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0157369_111285042	3300013105	Corn Rhizosphere	PGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0163163_104577343	3300014325	Switchgrass Rhizosphere	GEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLIRELGYLEVTGRWPAN*
Ga0182008_106313132	3300014497	Rhizosphere	VGKPGEIAACGCGFWWRVSKRGRWYGISKRRAFRALMPGLIRELGYLEVTGR
Ga0132257_1000931613	3300015373	Arabidopsis Rhizosphere	VWRMHCRCRFRAGRPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN*
Ga0187802_100751192	3300017822	Freshwater Sediment	MRCLCSFRAGKVGEIAACGCRFWWRVGTRGRWYAISRRRALGVLARELRRELDIFDVTGNWPAG
Ga0187818_103218662	3300017823	Freshwater Sediment	MRWLCSFRAGKVGEIAPCGCRFWWRAGKRGRWYAISRRRALGVLARELRRELDYFDVTGNWPAG
Ga0187807_10249411	3300017926	Freshwater Sediment	MRCLCSFRAGKVGEIAPCGCRFWWRAGKRGRWYAISRRRALGVLAHELRRELDYFDVTGNWPAG
Ga0187807_10975402	3300017926	Freshwater Sediment	MCSFRAGKVGEIAACGCRFWWRAGKRGRWYAISRRRALGVLARELRRELDYFDVTGNWPA
Ga0187807_11611802	3300017926	Freshwater Sediment	MRCLCSFRAGKVGEIAPCECRSWWWRVGKHGRWHAISKRRAFRELRTELMRELSYLELTGDWSAD
Ga0187806_10887101	3300017928	Freshwater Sediment	GKVGEIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELDYFDVTGNWPAG
Ga0187814_102809781	3300017932	Freshwater Sediment	PVWRMRCLCSFRAGKAGEIAACRCRFWWRVGRRGRWHAISRRRALGVLARELRRELDYFDVTGNWPAG
Ga0187809_104184111	3300017937	Freshwater Sediment	RMRCLCSFRAGKVGEIAPCECRSWWWRVGKHGRWHAISKRRAFRALRTELMRELSYLELTGDWPAD
Ga0187779_100180592	3300017959	Tropical Peatland	MFCRCPFRAGRRGEIAACGCRSWWRVGRSGRWYAISRRRAFRALLPELMGELGHFETTGGWPGN
Ga0187778_104055841	3300017961	Tropical Peatland	MRCLCSFRAGKVGEIAACGCRLWWRVGKRGRWYAISKRRVFRVLARELGREFSYFEATGNWPAG
Ga0187778_109959542	3300017961	Tropical Peatland	LCSFRAGQAGEIAACGCRLWWRVAKRGRWYAISERRAFRVLARELRREFSYFEVTGNWPA
Ga0187780_112606712	3300017973	Tropical Peatland	MHCLCWFRVGRVGEIAACECRWWWRVGRRGRWYAVSKRRAFRVLVSELRREINDYEVTGSWPAG
Ga0187777_101297202	3300017974	Tropical Peatland	MCCLCSFRAGQVGEIAACGCRLWWRVGKRGRWYAISERRAFRVLARELERELGYFEVTGDWPAG
Ga0187777_108065771	3300017974	Tropical Peatland	PIPPVWRMFCRCSFRVGRRGEIAACECRSWWRMSRRGRWYAISKRRAFRALLPGLKRELGYFEATGGWPGD
Ga0187777_111094591	3300017974	Tropical Peatland	IAACGCGFWWRVGRRGRWYAISKRRTFRALLPGLMRDLGHFEATGNWPGS
Ga0187815_104258191	3300018001	Freshwater Sediment	PPVWRMRCLCSFRAGKVGEIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELDIFDVTGNWPAG
Ga0187769_104769042	3300018086	Tropical Peatland	MRCLCSFRAGKAGEIAACGCRFWWRVGRRGRWYAISRRRALGVLERELRRELAYFDVTGNWPAG
Ga0213851_16009031	3300021860	Watersheds	PVWRMRCLCSFRAGKVGEIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELDYFDVTGNWPAG
Ga0207692_104419673	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	GEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLIRELGYLEVTGRWPAN
Ga0207692_106706142	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	LPVWRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Ga0207652_109828951	3300025921	Corn Rhizosphere	CRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN
Ga0207700_101332732	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MHCRCRFRAGKPGEIATCGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Ga0207664_100333768	3300025929	Agricultural Soil	MHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN
Ga0207686_113082342	3300025934	Miscanthus Rhizosphere	RAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Ga0207711_101352864	3300025941	Switchgrass Rhizosphere	VWRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMREL
Ga0207667_120773891	3300025949	Corn Rhizosphere	RFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN
Ga0207640_118907092	3300025981	Corn Rhizosphere	GLPALSLPVWRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Ga0207703_101100884	3300026035	Switchgrass Rhizosphere	VWRMHCMCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVGLPRFDGQG
Ga0207708_116435951	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MHCRCRFRVGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN
Ga0207674_100530867	3300026116	Corn Rhizosphere	KPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGRWPAN
Ga0207675_1001475282	3300026118	Switchgrass Rhizosphere	VWRMHCRCRFRAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Ga0207449_1022421	3300027472	Soil	MSVKAGQAQHCRCRFRAGKPGEIAACGCGFWWRVSKRGRWYAISKRHAFRALTPGLMRELGYLEVTGR
Ga0208565_10818101	3300027662	Peatlands Soil	MRCLCSFRAGKAGEIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELDYFDVTGNWPAG
Ga0209178_14258852	3300027725	Agricultural Soil	SLPVWRMHCRCRFRAGQPGEIATCGCGFWWRVSKRGRWYAISKRRAFRALMPGLMRELGYLEVTGRWPAN
Ga0268266_108875251	3300028379	Switchgrass Rhizosphere	RAGKPGEIAACGCGFWWRVSKGGRWYAISKRRAFRALMPGLIRELGYLEVTGRWPAN
Ga0189899_1091901	3300028445	Peatlands Soil	SFRAGRVGEIAACECRSWWRAGKRGRWYAISKRRAFRALLPELMRGLSYFEVTGRWPTDA
Ga0316363_100685953	3300030659	Peatlands Soil	MRCLCSFRAGQAGEIAACGCRFWWRVGKRGRWHAISRRRALGVLARELRRELDYFDVTGNWPAG
Ga0310038_101530302	3300030707	Peatlands Soil	MRCLCSFRAGKVGEIAACGCRFWWRVGKRGRWYAISRRRALRVLARELRRELDYFDVTGNWPAG
Ga0308173_113279681	3300032074	Soil	MHCTCRFKAGQPEEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLMGELGYLEVTGRWPAN
Ga0311301_109628713	3300032160	Peatlands Soil	EIAACGCRFWWRVGKRGRWYAISRRRALGVLARELRRELRRELDYFDVTGNWPTG
Ga0335085_104849701	3300032770	Soil	AGEIAACGCRLWWRVGRRGRWYAISRRRALSVLARQLRRELDYFDVTGNWPAG
Ga0335079_102616343	3300032783	Soil	GEIAACGCRSWWRMGRQGRWYAISKRRAFRALLPGLLGELGHFETTGDWPGN
Ga0335079_118946782	3300032783	Soil	PPVWRMRCLCSFRAGKVGEIAACECRSWWWRVGKHGRWHAISKRRAFRALRTELMRELSRLELTGDWPAN
Ga0335078_100924081	3300032805	Soil	IAACACRLWWRANKRGQWYAISKRRAFRMLTPELRRVLGQFEVTGSWPAG
Ga0335078_104920933	3300032805	Soil	MFCRCSFKVGRWGDIAACECRSWWRVGKRSRWYPISKRGAFRALLPELMRELNYFEVTGDWPGN
Ga0335078_108078431	3300032805	Soil	MRCLCSFRAGKVGEIAPCECRSWWWRVDKHGRWHAISKRRAFRALRTELMRELSY
Ga0335080_107919291	3300032828	Soil	CGCRLWWRVGRRGRWYAISRRRALGVLARELRRELDYFDVTGNWPAA
Ga0335080_122082572	3300032828	Soil	RAGEIAACGCRFWWRVGRRGRWYAISRRRALGVLARELRRELDYFDVTGNWPTG
Ga0335081_120816142	3300032892	Soil	MRCLCSFRAGKAGEIAACGCRFWWRVGRRGRWYAISRRRALGVLARELRRELDYFDVTGAWPAG
Ga0335072_104011193	3300032898	Soil	MHCRCRFRVGRPGEVAACGCGFWWRVSKRGRWYAISKRRAFRALMPDLIGELGYLEVTGRWPAD
Ga0335076_104222102	3300032955	Soil	MRCLCSFRAGKVGEIAPCECRSWWWRVDKHGRWNAISKRRVFRALRTELIRELSYLEVTGDWSAD
Ga0310811_103210261	3300033475	Soil	MHCRCRFRVGRPGEIAACGCGFWWRVSKRGRWYAISKRRAFRALMPGLIRELGYLEVTGRWPAD
Ga0314862_0026534_610_804	3300033803	Peatland	MRCLCSFRAGKAGEIAACECRFWWRFGKRGQWCAISRRRALGLLARELRRELDDFDITGHWPAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095285

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences