NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095315

Metagenome / Metatranscriptome Family F095315

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095315
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 63 residues
Representative Sequence MDVKTLIYEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY
Number of Associated Samples 70
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 85.71 %
% of genes near scaffold ends (potentially truncated) 33.33 %
% of genes from short scaffolds (< 2000 bps) 79.05 %
Associated GOLD sequencing projects 59
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (88.571 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(28.571 % of family members)
Environment Ontology (ENVO) Unclassified
(75.238 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(92.381 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 92.06%    β-sheet: 0.00%    Coil/Unstructured: 7.94%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF05766NinG 7.62
PF11753DUF3310 3.81
PF03237Terminase_6N 2.86
PF04466Terminase_3 2.86
PF13392HNH_3 1.90
PF02195ParBc 1.90
PF08291Peptidase_M15_3 0.95
PF13884Peptidase_S74 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG1783Phage terminase large subunitMobilome: prophages, transposons [X] 2.86


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A88.57 %
All OrganismsrootAll Organisms11.43 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000101|DelMOSum2010_c10011244Not Available5729Open in IMG/M
3300000101|DelMOSum2010_c10058100Not Available1880Open in IMG/M
3300000101|DelMOSum2010_c10103313Not Available1176Open in IMG/M
3300000116|DelMOSpr2010_c10124930Not Available922Open in IMG/M
3300000116|DelMOSpr2010_c10232616Not Available571Open in IMG/M
3300001352|JGI20157J14317_10041200Not Available2247Open in IMG/M
3300001352|JGI20157J14317_10148159Not Available736Open in IMG/M
3300002930|Water_100795Not Available6244Open in IMG/M
3300003592|JGI26246J51724_1100553Not Available519Open in IMG/M
3300004448|Ga0065861_1198712Not Available608Open in IMG/M
3300004457|Ga0066224_1052065All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae2424Open in IMG/M
3300006029|Ga0075466_1003107All Organisms → cellular organisms → Bacteria → Proteobacteria6043Open in IMG/M
3300006029|Ga0075466_1038051Not Available1468Open in IMG/M
3300006029|Ga0075466_1173826Not Available544Open in IMG/M
3300006752|Ga0098048_1001738Not Available9387Open in IMG/M
3300006752|Ga0098048_1178625Not Available629Open in IMG/M
3300006752|Ga0098048_1204863Not Available582Open in IMG/M
3300006802|Ga0070749_10593106Not Available598Open in IMG/M
3300006802|Ga0070749_10616061Not Available585Open in IMG/M
3300006803|Ga0075467_10020989All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria4207Open in IMG/M
3300006870|Ga0075479_10408182Not Available524Open in IMG/M
3300006924|Ga0098051_1077710Not Available899Open in IMG/M
3300007229|Ga0075468_10027548All Organisms → cellular organisms → Bacteria2046Open in IMG/M
3300007229|Ga0075468_10089577Not Available988Open in IMG/M
3300007231|Ga0075469_10030481Not Available1734Open in IMG/M
3300007276|Ga0070747_1203864Not Available696Open in IMG/M
3300007540|Ga0099847_1095048Not Available910Open in IMG/M
3300007540|Ga0099847_1136012Not Available736Open in IMG/M
3300007692|Ga0102823_1224547Not Available503Open in IMG/M
3300009003|Ga0102813_1180462Not Available655Open in IMG/M
3300009024|Ga0102811_1038194Not Available1825Open in IMG/M
3300009024|Ga0102811_1303049Not Available599Open in IMG/M
3300009076|Ga0115550_1208472Not Available655Open in IMG/M
3300009079|Ga0102814_10048986All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED972349Open in IMG/M
3300009079|Ga0102814_10276910Not Available913Open in IMG/M
3300009086|Ga0102812_10080413All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae1795Open in IMG/M
3300009086|Ga0102812_10364942Not Available786Open in IMG/M
3300009434|Ga0115562_1143056Not Available899Open in IMG/M
3300009442|Ga0115563_1018417All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED973899Open in IMG/M
3300009507|Ga0115572_10441235Not Available725Open in IMG/M
3300009507|Ga0115572_10661021Not Available572Open in IMG/M
3300010150|Ga0098056_1022574All Organisms → Viruses → Predicted Viral2236Open in IMG/M
3300010368|Ga0129324_10232566Not Available739Open in IMG/M
3300011118|Ga0114922_10474409Not Available1036Open in IMG/M
3300012524|Ga0129331_1003643Not Available574Open in IMG/M
3300012524|Ga0129331_1181571Not Available770Open in IMG/M
3300013010|Ga0129327_10405661Not Available724Open in IMG/M
3300013010|Ga0129327_10810303Not Available532Open in IMG/M
3300017697|Ga0180120_10428172Not Available517Open in IMG/M
3300017727|Ga0181401_1068466Not Available941Open in IMG/M
3300017735|Ga0181431_1007704Not Available2629Open in IMG/M
3300017735|Ga0181431_1015187Not Available1814Open in IMG/M
3300017742|Ga0181399_1044980Not Available1164Open in IMG/M
3300017767|Ga0181406_1084550Not Available966Open in IMG/M
3300020166|Ga0206128_1116068Not Available1130Open in IMG/M
3300020166|Ga0206128_1185728Not Available808Open in IMG/M
3300020166|Ga0206128_1257881Not Available638Open in IMG/M
3300020182|Ga0206129_10021728Not Available4948Open in IMG/M
3300020182|Ga0206129_10090455Not Available1652Open in IMG/M
3300020182|Ga0206129_10110426Not Available1409Open in IMG/M
3300020182|Ga0206129_10231315Not Available791Open in IMG/M
3300020185|Ga0206131_10179381Not Available1067Open in IMG/M
3300020187|Ga0206130_10007273Not Available12322Open in IMG/M
3300020187|Ga0206130_10117593Not Available1495Open in IMG/M
3300021378|Ga0213861_10456041Not Available616Open in IMG/M
3300021957|Ga0222717_10001586Not Available18420Open in IMG/M
3300021957|Ga0222717_10663192Not Available538Open in IMG/M
3300021959|Ga0222716_10216062Not Available1204Open in IMG/M
3300021959|Ga0222716_10591586Not Available607Open in IMG/M
3300022053|Ga0212030_1022263Not Available859Open in IMG/M
3300022053|Ga0212030_1043144Not Available636Open in IMG/M
3300022061|Ga0212023_1011935Not Available1124Open in IMG/M
3300022061|Ga0212023_1016384Not Available988Open in IMG/M
3300022164|Ga0212022_1052856Not Available628Open in IMG/M
3300022164|Ga0212022_1066936Not Available552Open in IMG/M
3300022169|Ga0196903_1004840Not Available1759Open in IMG/M
3300022169|Ga0196903_1026384Not Available693Open in IMG/M
3300022169|Ga0196903_1029589Not Available649Open in IMG/M
3300022178|Ga0196887_1076716Not Available790Open in IMG/M
(restricted) 3300023109|Ga0233432_10068318All Organisms → Viruses → Predicted Viral2135Open in IMG/M
(restricted) 3300023210|Ga0233412_10381746Not Available629Open in IMG/M
3300024192|Ga0228637_1049396Not Available849Open in IMG/M
3300024292|Ga0228630_1000121Not Available34265Open in IMG/M
(restricted) 3300024340|Ga0255042_10033287All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971211Open in IMG/M
(restricted) 3300024518|Ga0255048_10252592Not Available857Open in IMG/M
3300025070|Ga0208667_1010810Not Available2083Open in IMG/M
3300025083|Ga0208791_1024450Not Available1189Open in IMG/M
3300025098|Ga0208434_1012608Not Available2283Open in IMG/M
3300025508|Ga0208148_1058887Not Available924Open in IMG/M
3300025543|Ga0208303_1007325All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium3613Open in IMG/M
3300025543|Ga0208303_1053547Not Available971Open in IMG/M
3300025640|Ga0209198_1197142Not Available515Open in IMG/M
3300025645|Ga0208643_1175788Not Available523Open in IMG/M
3300025809|Ga0209199_1004059Not Available13790Open in IMG/M
3300025809|Ga0209199_1044396Not Available2278Open in IMG/M
3300025809|Ga0209199_1220197Not Available644Open in IMG/M
3300025880|Ga0209534_10169146Not Available1131Open in IMG/M
3300027753|Ga0208305_10338717Not Available522Open in IMG/M
3300027753|Ga0208305_10346034Not Available515Open in IMG/M
(restricted) 3300028045|Ga0233414_10140077Not Available1065Open in IMG/M
3300028287|Ga0257126_1225017Not Available571Open in IMG/M
3300028416|Ga0228614_1026388All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon TMED971416Open in IMG/M
3300028599|Ga0265309_10286789Not Available1054Open in IMG/M
3300032274|Ga0316203_1033111Not Available1503Open in IMG/M
3300034375|Ga0348336_066444Not Available1379Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous28.57%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine9.52%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater9.52%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine8.57%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine7.62%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater5.71%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine4.76%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater3.81%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater3.81%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.81%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.81%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.86%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine1.90%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface0.95%
MarineEnvironmental → Aquatic → Marine → Inlet → Unclassified → Marine0.95%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat0.95%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.95%
Estuary WaterEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuary Water0.95%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000101Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001352Pelagic Microbial community sample from North Sea - COGITO 998_met_07EnvironmentalOpen in IMG/M
3300002930Estuary water microbial communities from Pearl Estuary, Zhujiang, ChinaEnvironmentalOpen in IMG/M
3300003592Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI072_LV_10m_DNAEnvironmentalOpen in IMG/M
3300004448Marine viral communities from Newfoundland, Canada BC-1EnvironmentalOpen in IMG/M
3300004457Marine viral communities from Newfoundland, Canada MC-1EnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNAEnvironmentalOpen in IMG/M
3300006870Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007231Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_>0.8_DNAEnvironmentalOpen in IMG/M
3300007276Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31EnvironmentalOpen in IMG/M
3300007540Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007692Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743EnvironmentalOpen in IMG/M
3300009003Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.725EnvironmentalOpen in IMG/M
3300009024Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.705EnvironmentalOpen in IMG/M
3300009076Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511EnvironmentalOpen in IMG/M
3300009079Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741EnvironmentalOpen in IMG/M
3300009086Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713EnvironmentalOpen in IMG/M
3300009434Pelagic marine microbial communities from North Sea - COGITO_mtgs_110516EnvironmentalOpen in IMG/M
3300009442Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300011118Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaGEnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013010Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.8_DNAEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017742Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 22 SPOT_SRF_2011-05-21EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020187Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160512_1EnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300022053Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022061Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)EnvironmentalOpen in IMG/M
3300022164Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022178Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)EnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300023210 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MGEnvironmentalOpen in IMG/M
3300024192Seawater microbial communities from Monterey Bay, California, United States - 47DEnvironmentalOpen in IMG/M
3300024292Seawater microbial communities from Monterey Bay, California, United States - 37DEnvironmentalOpen in IMG/M
3300024340 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5EnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025508Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025543Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025640Pelagic marine microbial communities from North Sea - COGITO_mtgs_110519 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025809Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523 (SPAdes)EnvironmentalOpen in IMG/M
3300025880Pelagic Microbial community sample from North Sea - COGITO 998_met_07 (SPAdes)EnvironmentalOpen in IMG/M
3300027753Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741 (SPAdes)EnvironmentalOpen in IMG/M
3300028045 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_10_MGEnvironmentalOpen in IMG/M
3300028287Marine microbial communities from Saanich Inlet, British Columbia, Canada - SI060_120mEnvironmentalOpen in IMG/M
3300028416Seawater microbial communities from Monterey Bay, California, United States - 15DEnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300032274Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 6-month pyrrhotite 1EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1001124423300000101MarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
DelMOSum2010_1005810053300000101MarineMDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRIHLFTMTALLTAFVVYGVIIY*
DelMOSum2010_1010331313300000101MarineMDVKTLIDEANSYADKAIKRSQLELLGSRIREWMLQPIVVYRLHFAVMTALLSAFIIYEVIIY*
DelMOSpr2010_1012493023300000116MarineMDVKTLIRDANNHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
DelMOSpr2010_1023261623300000116MarineFRQTSYGESLMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
JGI20157J14317_1004120013300001352Pelagic MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHFIATTLLLATFVGYQLMIYPLG*
JGI20157J14317_1014815913300001352Pelagic MarineLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLVATTLLLAAFLGYELMIYPLS*
Water_10079533300002930Estuary WaterMDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
JGI26246J51724_110055313300003592MarineMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0065861_119871213300004448MarineMDVKTLIRDANKHADKAIRRSKAEVVARRFREWLEEPLVVYRLHLFTMTALLTAF
Ga0066224_105206543300004457MarineMDVKTLIRDANKHADKAIRRSKAEVVARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
Ga0075466_100310763300006029AqueousMDVKTLIRDANKHADKAIRRSKAEIMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYGVIIY*
Ga0075466_103805143300006029AqueousMDVKTLINEANKYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0075466_117382613300006029AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELMIYPLS*
Ga0098048_1001738143300006752MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPLG*
Ga0098048_117862523300006752MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0098048_120486313300006752MarineMDVKTLIDDANAYADKAIRRSELELLGSTVRDWMLQPLVVYRLHFAVLTAVLAAFMIY*
Ga0070749_1059310613300006802AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRASVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS*
Ga0070749_1061606123300006802AqueousMDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0075467_1002098963300006803AqueousMDVKSLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0075479_1040818213300006870AqueousLFRQTSYGESLMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0098051_107771033300006924MarineMSDQLMSCKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0075468_1002754883300007229AqueousMDVKSLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVII
Ga0075468_1008957743300007229AqueousMDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVII
Ga0075469_1003048113300007231AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEEKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS*
Ga0070747_120386413300007276AqueousMDVKTLIYEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0099847_109504813300007540AqueousMDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0099847_113601213300007540AqueousMDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102823_122454713300007692EstuarinePLRQITSREPLMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102813_118046223300009003EstuarineMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102811_103819443300009024EstuarineMDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102811_130304913300009024EstuarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLPAHFVG
Ga0115550_120847213300009076Pelagic MarineKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLTAFVIYEVIIY
Ga0102814_1004898643300009079EstuarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS*
Ga0102814_1027691023300009079EstuarineNEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102812_1008041313300009086EstuarineEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0102812_1036494233300009086EstuarineMDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLA
Ga0115562_114305623300009434Pelagic MarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFLGYELMIYPLS*
Ga0115563_101841763300009442Pelagic MarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGCELMIYPLS*
Ga0115572_1044123523300009507Pelagic MarineMDVKTLIDEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0115572_1066102123300009507Pelagic MarineMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS*
Ga0098056_102257433300010150MarineMDVKTLIDDANAYADKAIRRSELELLGSTVRDWMLQPLVVYRLHFAVLTAVLAAFIIY*
Ga0129324_1023256623300010368Freshwater To Marine Saline GradientMDVKTLIRDANKHADKAIRRSKAEIMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY*
Ga0114922_1047440913300011118Deep SubsurfaceMDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTA
Ga0129331_100364313300012524AqueousMDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYE
Ga0129331_118157113300012524AqueousMDVKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY*
Ga0129327_1040566113300013010Freshwater To Marine Saline GradientMDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEV
Ga0129327_1081030313300013010Freshwater To Marine Saline GradientMDVKTLINEANAYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY*
Ga0180120_1042817213300017697Freshwater To Marine Saline GradientMDVKTLINEANAYADKAIRQSYIEARASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0181401_106846613300017727SeawaterMDVKTLIDEANAYADKAIRQSYIEAKASRFREWITEPVIIYRLHFAVMTAFLAAFVLYEVIIY
Ga0181431_100770463300017735SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELLVYPLG
Ga0181431_101518753300017735SeawaterMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYELIVYPLG
Ga0181399_104498013300017742SeawaterMDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMAVFLAAFVIYEVIIY
Ga0181406_108455023300017767SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYQLIVYPLS
Ga0206128_111606833300020166SeawaterMDVKTLIDEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206128_118572823300020166SeawaterMDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY
Ga0206128_125788113300020166SeawaterMDVKTLINEANKYADKAIRQSYIEARASRFREWITEPMVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206129_1002172813300020182SeawaterMDVKTLIYEANKHADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0206129_1009045533300020182SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
Ga0206129_1011042623300020182SeawaterMDVKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLTAFVIYEVIIY
Ga0206129_1023131513300020182SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0206131_1017938113300020185SeawaterMDVKTLIMDANKHADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0206130_10007273143300020187SeawaterMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFKAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0206130_1011759323300020187SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLVATTLLLAAFVGYELIVYPLS
Ga0213861_1045604123300021378SeawaterMDVKTLIRDANKHADKAIRRSKAEVMARRFREWLKEPLVVYRLHLFTMTALLTAFVVYEVIIY
Ga0222717_1000158693300021957Estuarine WaterMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
Ga0222717_1066319223300021957Estuarine WaterMDVKTLINEANAYADKAIRQSYIEANASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0222716_1021606243300021959Estuarine WaterMDVKTLIDEANAYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVIAVFLAAFVIYEVIIY
Ga0222716_1059158613300021959Estuarine WaterLMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYQLIVYPLS
Ga0212030_102226313300022053AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELMIYPLS
Ga0212030_104314413300022053AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0212023_101193523300022061AqueousMDVKTLIRDANKHADKAIRRSKAEIMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYGVIIY
Ga0212023_101638413300022061AqueousMDVKSLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
Ga0212022_105285613300022164AqueousMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAF
Ga0212022_106693613300022164AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEEKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
Ga0196903_100484013300022169AqueousMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVG
Ga0196903_102638423300022169AqueousMDVKTLINEANAYADKAIRQSYIEAKASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY
Ga0196903_102958913300022169AqueousMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVG
Ga0196887_107671613300022178AqueousMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYQVIIY
(restricted) Ga0233432_1006831813300023109SeawaterMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY
(restricted) Ga0233412_1038174613300023210SeawaterVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLIATTLLLATFVGYQLIVYPLS
Ga0228637_104939633300024192SeawaterMDVKTLIYEANAYADKAIRQSYIEAKVSSFRAWVTEPVVVHRIHFIATTLLLATFVG
Ga0228630_1000121133300024292SeawaterMDVKTLIYEANAYADKAIRQSYIEAKVSSFRAWVTEPVVVHRIHFIATTLLLATFVGYQLIAYPLG
(restricted) Ga0255042_1003328743300024340SeawaterYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELIVYPLS
(restricted) Ga0255048_1025259223300024518SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYQLIVYPLS
Ga0208667_101081033300025070MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPLG
Ga0208791_102445033300025083MarineDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPLG
Ga0208434_101260883300025098MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVNRIHFIATTLLLATFVGYELIVYPL
Ga0208148_105888733300025508AqueousKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLVATTLLLAAFVGYELIVYPLS
Ga0208303_100732583300025543AqueousMDVKTLIRDANNHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVIIY
Ga0208303_105354743300025543AqueousMDVKTLIDEANKYADKAIRQSYIEARASRFREWITEPLVVYRLHFAVMTAFLAAFVIYEVIIY
Ga0209198_119714213300025640Pelagic MarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPL
Ga0208643_117578823300025645AqueousMDVKTLIRDANKHADKAIRRSKAEVMARRFREWLEEPLVVYRIHLFTMTALLTAFVVYGVIIY
Ga0209199_1004059103300025809Pelagic MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHLVATTLLLAAFLGYELMIYPLS
Ga0209199_104439623300025809Pelagic MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHFIATTLLLATFVGYQLMIYPLG
Ga0209199_122019723300025809Pelagic MarineSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIYPLS
Ga0209534_1016914653300025880Pelagic MarineMSDQLMSSKIRDAHRFADKAIRQSYIEAKASSFRAWVTEPVVVYRIHFIATTLLLATFV
Ga0208305_1033871723300027753EstuarineMDVKTLINEANKYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFV
Ga0208305_1034603413300027753EstuarineYADKAIRQSYIEAKASRFREWITEPVVVYRLHFAVMTAFLAAFVIYEVIIY
(restricted) Ga0233414_1014007733300028045SeawaterMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFVGYELMIYPLS
Ga0257126_122501713300028287MarineMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLATFV
Ga0228614_102638843300028416SeawaterNCYGEPLMDVKTLIYEANAYADKAIRQSYIEAKVSSFRAWVTEPVVVHRIHFIATTLLLATFVGYQLIAYPLG
Ga0265309_1028678943300028599SedimentMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMIY
Ga0316203_103311143300032274Microbial MatMDVKTLIRDANNHADKAIRRSKAEVMARRFREWLEEPLVVYRLHLFTMTALLTAFVVYEVLIY
Ga0348336_066444_1194_13793300034375AqueousMDVKTLIYEANAYADKAIRQSYIEAKASSFRAWVTEPVVVYKIHLIATTLLLAAFVGYELMI


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