NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095404

Metagenome / Metatranscriptome Family F095404

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095404
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 56 residues
Representative Sequence MFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL
Number of Associated Samples 74
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.89 %
% of genes near scaffold ends (potentially truncated) 26.67 %
% of genes from short scaffolds (< 2000 bps) 87.62 %
Associated GOLD sequencing projects 61
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (72.381 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(41.905 % of family members)
Environment Ontology (ENVO) Unclassified
(72.381 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(91.429 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 77.19%    β-sheet: 0.00%    Coil/Unstructured: 22.81%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF12684DUF3799 54.29
PF00145DNA_methylase 0.95
PF11160Hva1_TUDOR 0.95
PF05521Phage_H_T_join 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.95

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A72.38 %
All OrganismsrootAll Organisms27.62 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000115|DelMOSum2011_c10078630All Organisms → Viruses → Predicted Viral1155Open in IMG/M
3300000116|DelMOSpr2010_c10032941Not Available2404Open in IMG/M
3300000116|DelMOSpr2010_c10046816Not Available1916Open in IMG/M
3300000116|DelMOSpr2010_c10098328All Organisms → Viruses → Predicted Viral1110Open in IMG/M
3300000116|DelMOSpr2010_c10154106Not Available783Open in IMG/M
3300000116|DelMOSpr2010_c10174880Not Available710Open in IMG/M
3300000117|DelMOWin2010_c10063788Not Available1526Open in IMG/M
3300001965|GOS2243_1080367All Organisms → Viruses → Predicted Viral1855Open in IMG/M
3300005239|Ga0073579_1190717Not Available26651Open in IMG/M
3300005747|Ga0076924_1174037Not Available984Open in IMG/M
3300006025|Ga0075474_10209046All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300006026|Ga0075478_10058231All Organisms → Viruses → Predicted Viral1260Open in IMG/M
3300006026|Ga0075478_10185041All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300006026|Ga0075478_10222148Not Available572Open in IMG/M
3300006026|Ga0075478_10228476Not Available562Open in IMG/M
3300006027|Ga0075462_10086834Not Available978Open in IMG/M
3300006027|Ga0075462_10172067Not Available657Open in IMG/M
3300006027|Ga0075462_10179615Not Available641Open in IMG/M
3300006637|Ga0075461_10119762Not Available819Open in IMG/M
3300006637|Ga0075461_10230560Not Available547Open in IMG/M
3300006735|Ga0098038_1039243Not Available1742Open in IMG/M
3300006749|Ga0098042_1000648Not Available13528Open in IMG/M
3300006752|Ga0098048_1085217Not Available963Open in IMG/M
3300006752|Ga0098048_1186493Not Available614Open in IMG/M
3300006793|Ga0098055_1074513All Organisms → Viruses → Predicted Viral1340Open in IMG/M
3300006802|Ga0070749_10084494Not Available1892Open in IMG/M
3300006802|Ga0070749_10352177Not Available818Open in IMG/M
3300006802|Ga0070749_10494521Not Available667Open in IMG/M
3300006802|Ga0070749_10511686Not Available653Open in IMG/M
3300006802|Ga0070749_10615956Not Available585Open in IMG/M
3300006802|Ga0070749_10783240Not Available507Open in IMG/M
3300006810|Ga0070754_10369510All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300006810|Ga0070754_10387518All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300006810|Ga0070754_10429725Not Available575Open in IMG/M
3300006810|Ga0070754_10497482Not Available525Open in IMG/M
3300006867|Ga0075476_10043112Not Available1847Open in IMG/M
3300006916|Ga0070750_10055620Not Available1905Open in IMG/M
3300006916|Ga0070750_10340009Not Available635Open in IMG/M
3300006919|Ga0070746_10220887Not Available895Open in IMG/M
3300006922|Ga0098045_1084913Not Available754Open in IMG/M
3300006922|Ga0098045_1119479Not Available615Open in IMG/M
3300006924|Ga0098051_1123520Not Available690Open in IMG/M
3300006990|Ga0098046_1088767Not Available691Open in IMG/M
3300007345|Ga0070752_1290130Not Available626Open in IMG/M
3300007538|Ga0099851_1060211All Organisms → Viruses → Predicted Viral1482Open in IMG/M
3300007539|Ga0099849_1276273Not Available611Open in IMG/M
3300007640|Ga0070751_1288622Not Available614Open in IMG/M
3300009124|Ga0118687_10192719Not Available741Open in IMG/M
3300009124|Ga0118687_10313313Not Available593Open in IMG/M
3300010150|Ga0098056_1268629Not Available564Open in IMG/M
3300010150|Ga0098056_1330962Not Available500Open in IMG/M
3300010299|Ga0129342_1128182Not Available937Open in IMG/M
3300010316|Ga0136655_1042923All Organisms → Viruses → Predicted Viral1430Open in IMG/M
3300010316|Ga0136655_1069599Not Available1080Open in IMG/M
3300010368|Ga0129324_10077007Not Available1472Open in IMG/M
3300010389|Ga0136549_10269650Not Available716Open in IMG/M
3300013674|Ga0117783_106944Not Available595Open in IMG/M
3300017752|Ga0181400_1052344Not Available1263Open in IMG/M
3300017752|Ga0181400_1076747All Organisms → Viruses → Predicted Viral1002Open in IMG/M
3300017818|Ga0181565_10025861Not Available4336Open in IMG/M
3300017950|Ga0181607_10467139Not Available678Open in IMG/M
3300017951|Ga0181577_10598887All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.679Open in IMG/M
3300017986|Ga0181569_10092327Not Available2159Open in IMG/M
3300018416|Ga0181553_10107683All Organisms → Viruses → Predicted Viral1711Open in IMG/M
3300018418|Ga0181567_10094879All Organisms → cellular organisms → Bacteria2078Open in IMG/M
3300018420|Ga0181563_10463848Not Available715Open in IMG/M
3300019703|Ga0194021_1012816Not Available764Open in IMG/M
3300019733|Ga0194013_1026994Not Available681Open in IMG/M
3300019765|Ga0194024_1018037All Organisms → Viruses → Predicted Viral1497Open in IMG/M
3300021364|Ga0213859_10099601All Organisms → Viruses → Predicted Viral1378Open in IMG/M
3300021373|Ga0213865_10227841Not Available906Open in IMG/M
3300021425|Ga0213866_10342652Not Available740Open in IMG/M
3300021957|Ga0222717_10000648Not Available29683Open in IMG/M
3300022065|Ga0212024_1100308Not Available516Open in IMG/M
3300022069|Ga0212026_1057344Not Available589Open in IMG/M
3300022934|Ga0255781_10060088All Organisms → cellular organisms → Bacteria2208Open in IMG/M
3300022934|Ga0255781_10126079All Organisms → Viruses → Predicted Viral1357Open in IMG/M
(restricted) 3300024062|Ga0255039_10071877Not Available1344Open in IMG/M
3300024185|Ga0228669_1082124Not Available617Open in IMG/M
3300024223|Ga0228601_1009594All Organisms → Viruses → Predicted Viral1111Open in IMG/M
3300024247|Ga0228675_1010240All Organisms → cellular organisms → Bacteria2447Open in IMG/M
3300024267|Ga0228623_1018377All Organisms → Viruses → Predicted Viral1513Open in IMG/M
3300024320|Ga0233398_1129099Not Available571Open in IMG/M
3300024329|Ga0228631_1123704Not Available590Open in IMG/M
3300025070|Ga0208667_1021996All Organisms → Viruses → Predicted Viral1227Open in IMG/M
3300025083|Ga0208791_1015589Not Available1647Open in IMG/M
3300025098|Ga0208434_1046916Not Available957Open in IMG/M
3300025101|Ga0208159_1002123Not Available7058Open in IMG/M
3300025151|Ga0209645_1078844All Organisms → Viruses → Predicted Viral1098Open in IMG/M
3300025610|Ga0208149_1026048All Organisms → Viruses → Predicted Viral1635Open in IMG/M
3300025645|Ga0208643_1154929Not Available577Open in IMG/M
3300025674|Ga0208162_1015713All Organisms → Viruses → Predicted Viral3031Open in IMG/M
3300025769|Ga0208767_1036611All Organisms → Viruses → Predicted Viral2450Open in IMG/M
3300025769|Ga0208767_1164677Not Available788Open in IMG/M
3300025769|Ga0208767_1184041Not Available720Open in IMG/M
3300025769|Ga0208767_1215847Not Available631Open in IMG/M
3300025771|Ga0208427_1191647Not Available654Open in IMG/M
3300025840|Ga0208917_1077152All Organisms → Viruses → Predicted Viral1259Open in IMG/M
3300025840|Ga0208917_1188820Not Available693Open in IMG/M
3300025853|Ga0208645_1165397Not Available823Open in IMG/M
3300025853|Ga0208645_1187773Not Available745Open in IMG/M
3300025889|Ga0208644_1201130Not Available865Open in IMG/M
3300026426|Ga0247570_1053790Not Available840Open in IMG/M
3300028134|Ga0256411_1055626All Organisms → Viruses → Predicted Viral1351Open in IMG/M
3300034375|Ga0348336_030419Not Available2557Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous41.90%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine15.24%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater10.48%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh8.57%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine6.67%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient3.81%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.86%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment1.90%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment1.90%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.95%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.95%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.95%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.95%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.95%
Marine Methane Seep SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment0.95%
Coral TissueHost-Associated → Invertebrates → Cnidaria → Unclassified → Unclassified → Coral Tissue0.95%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000115Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011EnvironmentalOpen in IMG/M
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001965Marine microbial communities from Coastal Floreana, Equador - GS028EnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005747Seawater microbial communities from Vineyard Sound, MA, USA - control T14EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006637Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNAEnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006749Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006922Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaGEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006990Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaGEnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007538Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaGEnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007640Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28EnvironmentalOpen in IMG/M
3300009124Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 72 cmbsfEnvironmentalOpen in IMG/M
3300010150Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaGEnvironmentalOpen in IMG/M
3300010299Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010389Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsfEnvironmentalOpen in IMG/M
3300013674Coral viral communities from the Great Barrier Reef, Australia - Pocillopora damicornis (fresh isolate) - PDam_NLN_DNA_SISPAHost-AssociatedOpen in IMG/M
3300017752Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 23 SPOT_SRF_2011-06-22EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018418Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019703Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BRC_7-8_MGEnvironmentalOpen in IMG/M
3300019733Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_9-10_MGEnvironmentalOpen in IMG/M
3300019765Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MGEnvironmentalOpen in IMG/M
3300021364Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304EnvironmentalOpen in IMG/M
3300021373Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282EnvironmentalOpen in IMG/M
3300021425Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO284EnvironmentalOpen in IMG/M
3300021957Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18DEnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022069Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)EnvironmentalOpen in IMG/M
3300022934Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaGEnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024223Seawater microbial communities from Monterey Bay, California, United States - 1DEnvironmentalOpen in IMG/M
3300024247Seawater microbial communities from Monterey Bay, California, United States - 36D_rEnvironmentalOpen in IMG/M
3300024267Seawater microbial communities from Monterey Bay, California, United States - 28DEnvironmentalOpen in IMG/M
3300024320Seawater microbial communities from Monterey Bay, California, United States - 38DEnvironmentalOpen in IMG/M
3300024329Seawater microbial communities from Monterey Bay, California, United States - 39DEnvironmentalOpen in IMG/M
3300025070Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025083Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025098Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025101Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025674Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025771Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025840Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300026426Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 23R (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300028134Metatranscriptome of seawater microbial communities from Monterey Bay, California, United States - WCR_12 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034375Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1007863023300000115MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEFESKL*
DelMOSpr2010_1003294173300000116MarineMHFLTNYTTDKVKLAYMYVEHLRSNWRELDDDRKQALLKQISELTNVDFIVEQYESKL*
DelMOSpr2010_1004681623300000116MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEFESKL*
DelMOSpr2010_1009832823300000116MarineMFLTNYTTDKVKLAYMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITXEFESKL*
DelMOSpr2010_1015410623300000116MarineMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEFESKL*
DelMOSpr2010_1017488023300000116MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
DelMOWin2010_1006378843300000117MarineMFLTNYTTDKVKLAFIYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
GOS2243_108036723300001965MarineMHFLTNYTTDKVKLAYMYVEHLRHNWRELDDTRKQALLQQISELTNVDFIVEQYESKL*
Ga0073579_1190717313300005239MarineMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDERKQQLLKQISELTNVDFITQEFESKL*
Ga0076924_117403723300005747MarineMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISELTNVDFITQEFESKL*
Ga0075474_1020904623300006025AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0075478_1005823113300006026AqueousYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
Ga0075478_1018504123300006026AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSTLDDERKQQLLKQISELTNVDFITQEFESKL*
Ga0075478_1022214813300006026AqueousNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEYESKL*
Ga0075478_1022847613300006026AqueousYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEFESKL*
Ga0075462_1008683423300006027AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKLQLLKQISELTNVDFITQEYESKL*
Ga0075462_1017206723300006027AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFI
Ga0075462_1017961513300006027AqueousMYLTNYTTDKVKLAYMYVEHLRSNWRELDDDRKLALLKQISELTNVDFIVEQYESKL*
Ga0075461_1011976213300006637AqueousVKLAFMYVEMLRSNWSTLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0075461_1023056023300006637AqueousTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEFESKL*
Ga0098038_103924313300006735MarineYTTDKVKLAYMYSEWLRHNWRSLPEERIEQLLSQISELTNVDFITQQYDSKL*
Ga0098042_1000648133300006749MarineMHYLTNYTTDKVKLAYMYSEWLRHNWRSLPEERIEQLLSQISELTNVDFITQQYDSKL*
Ga0098048_108521723300006752MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL**
Ga0098048_118649313300006752MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0098055_107451323300006793MarineMPFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0070749_1008449433300006802AqueousMHFLTNYTTDKVKLAYMYVEHLRYNWRELDDDRKLALLKQISELTNVDFIVEQYESKL*
Ga0070749_1035217713300006802AqueousKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
Ga0070749_1049452123300006802AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQE
Ga0070749_1051168623300006802AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISELTNVDFITQEYESKL*
Ga0070749_1061595613300006802AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSTLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0070749_1078324023300006802AqueousKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
Ga0070754_1036951023300006810AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEYESKL*RSSY*
Ga0070754_1038751823300006810AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*KSSY*
Ga0070754_1042972513300006810AqueousTNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEYESKL*
Ga0070754_1049748223300006810AqueousMFLTNYTTDKVKLAFMYVEMLRTNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
Ga0075476_1004311233300006867AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*RLSY*
Ga0070750_1005562023300006916AqueousMHFLTNYTTDKVKLAYMYVEHLRSNWRELDDDRKLALLKQISELTNVDFIVEQYESKL*
Ga0070750_1034000913300006916AqueousVKLAYMYSEWLRHNWRNLPEERIEQLLSQISELTNVDFITQQYESKL*
Ga0070746_1022088733300006919AqueousMHYLTNYTTDKVKLAYMYSEWLRHNWRNLPEERIEQLLSQISELTNVDFITQQYESKL*
Ga0098045_108491323300006922MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*AKK*
Ga0098045_111947923300006922MarineTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL*
Ga0098051_112352013300006924MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEFESKL*AKK*
Ga0098046_108876713300006990MarineKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0070752_129013023300007345AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISSLTNVDFITQEYESKL*
Ga0099851_106021123300007538AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEFESKL*
Ga0099849_127627323300007539AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDKRKQQLLKQISELTNVDFITQEFESKL*
Ga0070751_128862223300007640AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEYESKL*
Ga0118687_1019271923300009124SedimentMYLTNYTTDKVKLAYMYVENLRHNWAQLDDDRKLALLKHISELTNVDFIVEQYESKL*
Ga0118687_1031331323300009124SedimentMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISQLTNVDFITQEYESKL*
Ga0098056_126862923300010150MarineTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0098056_133096213300010150MarineTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0129342_112818213300010299Freshwater To Marine Saline GradientMFLTNYTTDKVKLAYMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEFESKL*
Ga0136655_104292313300010316Freshwater To Marine Saline GradientKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEYESKL*
Ga0136655_106959913300010316Freshwater To Marine Saline GradientMFLTNYTTDKVKLAFMYVEMPRSNWGTLDDERKQQLLKQISELTNVDFITQEYESKL*
Ga0129324_1007700723300010368Freshwater To Marine Saline GradientMYLTNYTTDKVKLAYMYVENLRHNWAQLDDDRKLALLKQISELTNVDFIVEQYESKL*
Ga0136549_1026965023300010389Marine Methane Seep SedimentMYLTNYTTDKVKLAYMYVENLRHNWAQLDDDRKLALLQQISELTNVDFIVEQYESKL*
Ga0117783_10694423300013674Coral TissueLCRYLTNYTTDKVKLAYMYVEHLRHNWRELDDTRKQKLLQQISELTNVDFIVEQYESKL*
Ga0181400_105234413300017752SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDF
Ga0181400_107674723300017752SeawaterMPFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0181565_1002586153300017818Salt MarshMYLTNYTTDKVKLAYMYVEHLRYNWRELDDDRKQALLKQISELTNVDFIVEQYESKL
Ga0181607_1046713923300017950Salt MarshMFLTNYTTDKVKLAYMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0181577_1059888723300017951Salt MarshMHFLTNYTTDKVKLAYMYVENLRSNWRELDDDRKLALLKQISELTNVDFIVEQYESKL
Ga0181569_1009232723300017986Salt MarshMYLTNYTTDKVKLAYMYVEHLRYNWRELDDDRKLALLKQISELTNVDFIVEQYESKL
Ga0181553_1010768323300018416Salt MarshMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0181567_1009487933300018418Salt MarshMHFLTNYTTDKVKLAYMYVEHLRYNWRELDDDRKLALLKQISELTNVDFIVEQYESKL
Ga0181563_1046384823300018420Salt MarshMHFLTNYTTDKVKLAYMYVEHLRSNWRELDDDRKLALLKQISELTNVDFIVEQYESKL
Ga0194021_101281623300019703SedimentMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0194013_102699423300019733SedimentMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0194024_101803723300019765FreshwaterMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEYESKLXRSSY
Ga0213859_1009960123300021364SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEYESKL
Ga0213865_1022784113300021373SeawaterMHFLTNYTTDKVKLAYMYVEHLRSNWRELDDDRKLALLKQISELTNVDF
Ga0213866_1034265223300021425SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWSTLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0222717_10000648163300021957Estuarine WaterMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0212024_110030823300022065AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKLQLLKQISELTNVDFITQEYESKL
Ga0212026_105734423300022069AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEFESKL
Ga0255781_1006008843300022934Salt MarshMHFLTNYTTDKVKLAYMYVEHLRYNWRELDDDRKQALLKQISELTNVDFIVEQYESKL
Ga0255781_1012607913300022934Salt MarshTNYTTDKVKLAFMYVEMLRSNWGTLDDERKQQLLKQISELTNVDFITQEYESKL
(restricted) Ga0255039_1007187733300024062SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0228669_108212423300024185SeawaterMPFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0228601_100959433300024223SeawaterNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0228675_101024053300024247SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEFESKL
Ga0228623_101837743300024267SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEFESKLXAK
Ga0233398_112909913300024320SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDERKQQLLKQISELTNVDFITQEFESKL
Ga0228631_112370423300024329SeawaterMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0208667_102199613300025070MarineFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0208791_101558923300025083MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKLXRSSY
Ga0208434_104691633300025098MarineMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKLX
Ga0208159_100212333300025101MarineMHYLTNYTTDKVKLAYMYSEWLRHNWRSLPEERIEQLLSQISELTNVDFITQQYDSKL
Ga0209645_107884423300025151MarineMHFLTNYTTDKVKLAYMYVEHLRHNWRELDDTRKQALLQQISELTNVDFIVDQYESKL
Ga0208149_102604813300025610AqueousMFLTNYTTDKVKLAFMYVEMLRTNWSNLDDKRKQQLLKQISELTNVDFITQEYESKLXRSSY
Ga0208643_115492923300025645AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISELTNVDFITQEFESKL
Ga0208162_101571343300025674AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDKRKQQLLKQISELTNVDFITQEFESKL
Ga0208767_103661113300025769AqueousLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0208767_116467723300025769AqueousMYLTNYTTDKVKLAYMYVEHLRSNWRELDDDRKLALLKQISELTNVDFIVEQYESKL
Ga0208767_118404123300025769AqueousMHYLTNYTTDKVKLAYMYSEWLRHNWRNLPEERIEQLLSQISELTNVDFITQQYESKLXK
Ga0208767_121584723300025769AqueousMFLTNYTTDKVKLAYMYVEMLRSNWSNLDDKRKLQLLKQISELTNVDFITQEYESKL
Ga0208427_119164713300025771AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYES
Ga0208917_107715213300025840AqueousTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKL
Ga0208917_118882023300025840AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFITQEYESKLXKSSY
Ga0208645_116539723300025853AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSNLDDKRKQQLLKQISELTNVDFIIQEYESKL
Ga0208645_118777323300025853AqueousMFLTNYTTDKVKLAFMYVEMLRSNWSTLDDERKQQLLKQISELTNVDFITQEFESKL
Ga0208644_120113023300025889AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGNLDDKRKQQLLKQISELTNVDFITQEYESKLXRSSY
Ga0247570_105379023300026426SeawaterMPFLTNYTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEFESKL
Ga0256411_105562623300028134SeawaterMPFLTNHTTDKVKLAFMYVEMLRSNWSNLDDERKQQLLKQISELTNVDFITQEYESKL
Ga0348336_030419_1916_21043300034375AqueousMFLTNYTTDKVKLAFMYVEMLRSNWGTLDDERKLQLLKQISELTNVDFITQEFESKLWRSSY

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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