Basic Information | |
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Family ID | F095436 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 105 |
Average Sequence Length | 44 residues |
Representative Sequence | ERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Number of Associated Samples | 77 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 1.90 % |
% of genes near scaffold ends (potentially truncated) | 96.19 % |
% of genes from short scaffolds (< 2000 bps) | 92.38 % |
Associated GOLD sequencing projects | 71 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.38 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (95.238 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.667 % of family members) |
Environment Ontology (ENVO) | Unclassified (42.857 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (60.000 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 24.66% β-sheet: 0.00% Coil/Unstructured: 75.34% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.38 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Bog Forest Soil Watersheds Soil Vadose Zone Soil Tropical Forest Soil Peatlands Soil Soil Grass Soil Soil Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Fen Palsa Arabidopsis Thaliana Rhizosphere Populus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
E4A_07169380 | 2170459003 | Grass Soil | AERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
JGI1027J12803_1039373811 | 3300000955 | Soil | SKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0063356_1037126272 | 3300004463 | Arabidopsis Thaliana Rhizosphere | FDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0066395_100957951 | 3300004633 | Tropical Forest Soil | HEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS* |
Ga0066395_105989102 | 3300004633 | Tropical Forest Soil | DMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0062388_1027938621 | 3300004635 | Bog Forest Soil | MSKYMTNEQTLQYLYALREKTVPVYSHSYAGRPPVPNSGKE* |
Ga0066388_1005505793 | 3300005332 | Tropical Forest Soil | MSKYMSNQEVIDYLYKLREKTVPIYSHSYAGRPPVADKK* |
Ga0066388_1014393711 | 3300005332 | Tropical Forest Soil | ETFDMSKYMTNEQTLHYLRALREKTVPVYSHSYAGRPPVPDGGKE* |
Ga0066388_1031625801 | 3300005332 | Tropical Forest Soil | KYMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE* |
Ga0066388_1041468451 | 3300005332 | Tropical Forest Soil | DMVHHEKFDMSKYMTNEQILHYLRGLREKTVPVYSHSYAGRPPVPEGEKE* |
Ga0070708_1018446992 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | RFDMSKYMSNREVIDYLCKLREKTVPVYSHSYAGRPPVPDKK* |
Ga0066701_101833093 | 3300005552 | Soil | LGDMVHEERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE* |
Ga0066700_101776001 | 3300005559 | Soil | ERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0066905_1000021613 | 3300005713 | Tropical Forest Soil | MSKYMNNREVIDYLYRLREKTVPVYSHSYAGRPPVADKK* |
Ga0066905_1014214952 | 3300005713 | Tropical Forest Soil | HAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKTEE* |
Ga0066905_1021985801 | 3300005713 | Tropical Forest Soil | VHAERFDMSKYMTNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE* |
Ga0066903_1014744241 | 3300005764 | Tropical Forest Soil | VHREKFDMAKYMTNEQVLQYLYRLREKTVPVYSHSYTGRPPVPDAGKKE* |
Ga0066903_1051332972 | 3300005764 | Tropical Forest Soil | TNEQCLKYLYALREKTVPVYSHSYTGRPPLPDGGKG* |
Ga0066903_1057058871 | 3300005764 | Tropical Forest Soil | FDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKTEE* |
Ga0066903_1070770591 | 3300005764 | Tropical Forest Soil | MVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS* |
Ga0075024_1001151592 | 3300006047 | Watersheds | EKFDMSKYMSNEQVIQYLYGLREKTVPVYSHSYAGRPPAPNDGKE* |
Ga0074059_100089662 | 3300006578 | Soil | VHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0075429_1004255651 | 3300006880 | Populus Rhizosphere | YMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE* |
Ga0075426_103461961 | 3300006903 | Populus Rhizosphere | SNEQVIHYLYSLREKTVPVYSHSYAGRPPAPEAGKT* |
Ga0099795_102994091 | 3300007788 | Vadose Zone Soil | EQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKA* |
Ga0126374_118055462 | 3300009792 | Tropical Forest Soil | YMTNEQCLKYLYALREKTVPVYSHSYTGRPPLPDGGKE* |
Ga0126380_121491762 | 3300010043 | Tropical Forest Soil | DMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDADKT* |
Ga0126384_117836752 | 3300010046 | Tropical Forest Soil | YMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE* |
Ga0126382_101217292 | 3300010047 | Tropical Forest Soil | MSKYINNREVIDYLYRLREKTVPVYSHSYAGRPPVADKK* |
Ga0126382_115913371 | 3300010047 | Tropical Forest Soil | MSKYMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE* |
Ga0126373_113774192 | 3300010048 | Tropical Forest Soil | ERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPAPDKAEE* |
Ga0126373_125888512 | 3300010048 | Tropical Forest Soil | HEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPD* |
Ga0126370_102413061 | 3300010358 | Tropical Forest Soil | DDMVHHEKFDLSKYMTNEQVVKYLYGLREKTVPVYSHSYTGRPPVPDGGKG* |
Ga0126370_104254431 | 3300010358 | Tropical Forest Soil | PLEDMVHYETFDMSKYMTNEQTLHYLRALREKTVPVYSHSYAGRPPVPDGGKE* |
Ga0126376_123106102 | 3300010359 | Tropical Forest Soil | DMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS* |
Ga0126372_108496831 | 3300010360 | Tropical Forest Soil | SKYMSNREVIEYLYRLRERTVPVYSHSYAGRPPVPDKAEE* |
Ga0126378_120536471 | 3300010361 | Tropical Forest Soil | MSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0126378_127766971 | 3300010361 | Tropical Forest Soil | PLADMVHAERFDMSKYMSNREVIEYLYGLREKTVPLYSHSYAGRPPIPDKAEE* |
Ga0126377_114627741 | 3300010362 | Tropical Forest Soil | MSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE* |
Ga0126377_120629482 | 3300010362 | Tropical Forest Soil | DDMVHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGNG* |
Ga0126379_102650901 | 3300010366 | Tropical Forest Soil | MSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDADKK* |
Ga0126379_117008781 | 3300010366 | Tropical Forest Soil | LDDMVHHEKFDMSKYMTNEQVVKYLYGLREKTVPVYSHSYTGRPPVPDGEKG* |
Ga0126379_138546751 | 3300010366 | Tropical Forest Soil | REVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE* |
Ga0126381_1003532731 | 3300010376 | Tropical Forest Soil | KYMSNEEVIRYLYSLREKTVPVYSHSYAGRPPVPDTGKA* |
Ga0126381_1026767402 | 3300010376 | Tropical Forest Soil | HEKFDMAKYMSNEEVIRYLYSLREKTVPVYSHSYAGRPPVPDTGKA* |
Ga0136449_1005317692 | 3300010379 | Peatlands Soil | MVHRERYEMSKYMTNEQVVKYLYDLREKTVPVYGHFTSGRPGVRDQT* |
Ga0126383_100871441 | 3300010398 | Tropical Forest Soil | EQTLHYLRGLREKTVPVYSHSYAGRPPMPDGGKE* |
Ga0126383_101681633 | 3300010398 | Tropical Forest Soil | EKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS* |
Ga0126383_134563942 | 3300010398 | Tropical Forest Soil | KYMTNEQVLKYLYALREKTVPVYSHSYTGRPPVPDAGKE* |
Ga0124844_12721691 | 3300010868 | Tropical Forest Soil | EERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDK* |
Ga0137391_109979313 | 3300011270 | Vadose Zone Soil | DDMVHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKE* |
Ga0137389_108375151 | 3300012096 | Vadose Zone Soil | MVHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKA* |
Ga0137388_108079352 | 3300012189 | Vadose Zone Soil | HHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKK* |
Ga0137388_116636501 | 3300012189 | Vadose Zone Soil | EKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDRGKE* |
Ga0126369_123251371 | 3300012971 | Tropical Forest Soil | MTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKG* |
Ga0126369_131970582 | 3300012971 | Tropical Forest Soil | SNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS* |
Ga0126369_134127241 | 3300012971 | Tropical Forest Soil | EQCLKYLYALREKTVPVYSHSYTGRPPLPGGGKG* |
Ga0182033_112233281 | 3300016319 | Soil | HAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0182035_108383671 | 3300016341 | Soil | PLEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0182034_107997522 | 3300016371 | Soil | LEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0182040_114629412 | 3300016387 | Soil | AERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0182037_115150791 | 3300016404 | Soil | RPLEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0182038_110055712 | 3300016445 | Soil | SKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE |
Ga0182038_120894621 | 3300016445 | Soil | EQALQYLYALREKTVPVYSHSYAGRPPVPDTGQPAGGKG |
Ga0210410_117021301 | 3300021479 | Soil | EDMVHAERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0126371_103532081 | 3300021560 | Tropical Forest Soil | DMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS |
Ga0126371_137631691 | 3300021560 | Tropical Forest Soil | NEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKK |
Ga0207684_105076842 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | SNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0209517_106280251 | 3300027854 | Peatlands Soil | NEQVLQYLYALREKTVPVYSHSYAGRPPTPLPKGSE |
Ga0209465_101349311 | 3300027874 | Tropical Forest Soil | HYDKFDMTKYMSNEEVIRYLYALREKTVPVYSHSYAGRPPVPDPGKA |
Ga0209465_103373422 | 3300027874 | Tropical Forest Soil | AERFDISKYMSNREVIEYLYRLREKTMPVYSHSYAGRPPVPDKAEE |
Ga0209283_101976433 | 3300027875 | Vadose Zone Soil | KYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0209069_100501821 | 3300027915 | Watersheds | MSKYMSNEQVIQYLYGLREKTVPVYSHSYTGRPPAPHDGKE |
Ga0302178_105400512 | 3300030013 | Palsa | DKFDMSKYMTNEQILHYLHGLREKTVPVYSHSYAGRPPVPDGGKE |
Ga0318541_101687341 | 3300031545 | Soil | DMVHRDRFDMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE |
Ga0318528_100038956 | 3300031561 | Soil | VHAERFDMSKYMSNREVVEYLYRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0318515_101108931 | 3300031572 | Soil | RPLEDMVHRDRFDMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE |
Ga0318555_100081554 | 3300031640 | Soil | HRPLGDMVHEERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0318560_102523541 | 3300031682 | Soil | DMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318493_108984972 | 3300031723 | Soil | YMSNREVVEYLYRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0318502_103927702 | 3300031747 | Soil | LEDMVHAERFDMSKYMSNREVIEYLYGLREKTVPLYSHSYAGRPPIPDKAEE |
Ga0318535_101412041 | 3300031764 | Soil | MSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE |
Ga0318526_103509702 | 3300031769 | Soil | SKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318546_102179171 | 3300031771 | Soil | DMVHEERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0318546_106672462 | 3300031771 | Soil | NREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE |
Ga0318543_100681681 | 3300031777 | Soil | ERFDLSKYMSNREVIEYLCRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0318566_100128111 | 3300031779 | Soil | HEERFDLSKYMSNREVIEYLCRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0318567_103603842 | 3300031821 | Soil | LEDMVHAERFDMSKYLSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318567_107990761 | 3300031821 | Soil | VHAERFDVSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE |
Ga0318517_102551762 | 3300031835 | Soil | RFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318527_105300342 | 3300031859 | Soil | VHCDRFDMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE |
Ga0318495_102567311 | 3300031860 | Soil | EDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0306925_121974702 | 3300031890 | Soil | MVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPAPDKAKE |
Ga0318536_102136281 | 3300031893 | Soil | RPLGDMVHEERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0302322_1032874501 | 3300031902 | Fen | MTNEQILQYLRALREKTVPVYSHSYAGRPPVPQDGGGR |
Ga0302322_1035332252 | 3300031902 | Fen | NEQTLQYLYALREKTVPVYSHSYAGRPPVPDGGKG |
Ga0318530_102379802 | 3300031959 | Soil | EMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318531_104215972 | 3300031981 | Soil | RPLEDMVHAERFDVSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE |
Ga0318569_102785861 | 3300032010 | Soil | DRVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318507_103276292 | 3300032025 | Soil | ERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318504_103762622 | 3300032063 | Soil | KYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE |
Ga0318525_102449381 | 3300032089 | Soil | NREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE |
Ga0318540_102463901 | 3300032094 | Soil | DIVHEERFDLSKYMSNREVIEYLCRLREKTVPVYSHSYAGRPPVPDKAKE |
Ga0311301_104797202 | 3300032160 | Peatlands Soil | MVHRERYEMSKYMTNEQVVKYLYDLREKTVPVYGHFTSGRPGVRDQT |
Ga0306920_1025585571 | 3300032261 | Soil | SKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE |
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