NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095436

Metagenome / Metatranscriptome Family F095436

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095436
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 44 residues
Representative Sequence ERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Number of Associated Samples 77
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.90 %
% of genes near scaffold ends (potentially truncated) 96.19 %
% of genes from short scaffolds (< 2000 bps) 92.38 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (95.238 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil
(26.667 % of family members)
Environment Ontology (ENVO) Unclassified
(42.857 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(60.000 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 24.66%    β-sheet: 0.00%    Coil/Unstructured: 75.34%
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Variant

51015202530354045ERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEESequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
95.2%4.8%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Peatlands Soil
Soil
Grass Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Fen
Palsa
Arabidopsis Thaliana Rhizosphere
Populus Rhizosphere
5.7%26.7%2.9%2.9%25.7%8.6%15.2%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E4A_071693802170459003Grass SoilAERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
JGI1027J12803_10393738113300000955SoilSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0063356_10371262723300004463Arabidopsis Thaliana RhizosphereFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0066395_1009579513300004633Tropical Forest SoilHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS*
Ga0066395_1059891023300004633Tropical Forest SoilDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0062388_10279386213300004635Bog Forest SoilMSKYMTNEQTLQYLYALREKTVPVYSHSYAGRPPVPNSGKE*
Ga0066388_10055057933300005332Tropical Forest SoilMSKYMSNQEVIDYLYKLREKTVPIYSHSYAGRPPVADKK*
Ga0066388_10143937113300005332Tropical Forest SoilETFDMSKYMTNEQTLHYLRALREKTVPVYSHSYAGRPPVPDGGKE*
Ga0066388_10316258013300005332Tropical Forest SoilKYMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE*
Ga0066388_10414684513300005332Tropical Forest SoilDMVHHEKFDMSKYMTNEQILHYLRGLREKTVPVYSHSYAGRPPVPEGEKE*
Ga0070708_10184469923300005445Corn, Switchgrass And Miscanthus RhizosphereRFDMSKYMSNREVIDYLCKLREKTVPVYSHSYAGRPPVPDKK*
Ga0066701_1018330933300005552SoilLGDMVHEERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE*
Ga0066700_1017760013300005559SoilERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0066905_10000216133300005713Tropical Forest SoilMSKYMNNREVIDYLYRLREKTVPVYSHSYAGRPPVADKK*
Ga0066905_10142149523300005713Tropical Forest SoilHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKTEE*
Ga0066905_10219858013300005713Tropical Forest SoilVHAERFDMSKYMTNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE*
Ga0066903_10147442413300005764Tropical Forest SoilVHREKFDMAKYMTNEQVLQYLYRLREKTVPVYSHSYTGRPPVPDAGKKE*
Ga0066903_10513329723300005764Tropical Forest SoilTNEQCLKYLYALREKTVPVYSHSYTGRPPLPDGGKG*
Ga0066903_10570588713300005764Tropical Forest SoilFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKTEE*
Ga0066903_10707705913300005764Tropical Forest SoilMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS*
Ga0075024_10011515923300006047WatershedsEKFDMSKYMSNEQVIQYLYGLREKTVPVYSHSYAGRPPAPNDGKE*
Ga0074059_1000896623300006578SoilVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0075429_10042556513300006880Populus RhizosphereYMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE*
Ga0075426_1034619613300006903Populus RhizosphereSNEQVIHYLYSLREKTVPVYSHSYAGRPPAPEAGKT*
Ga0099795_1029940913300007788Vadose Zone SoilEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKA*
Ga0126374_1180554623300009792Tropical Forest SoilYMTNEQCLKYLYALREKTVPVYSHSYTGRPPLPDGGKE*
Ga0126380_1214917623300010043Tropical Forest SoilDMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDADKT*
Ga0126384_1178367523300010046Tropical Forest SoilYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE*
Ga0126382_1012172923300010047Tropical Forest SoilMSKYINNREVIDYLYRLREKTVPVYSHSYAGRPPVADKK*
Ga0126382_1159133713300010047Tropical Forest SoilMSKYMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE*
Ga0126373_1137741923300010048Tropical Forest SoilERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPAPDKAEE*
Ga0126373_1258885123300010048Tropical Forest SoilHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPD*
Ga0126370_1024130613300010358Tropical Forest SoilDDMVHHEKFDLSKYMTNEQVVKYLYGLREKTVPVYSHSYTGRPPVPDGGKG*
Ga0126370_1042544313300010358Tropical Forest SoilPLEDMVHYETFDMSKYMTNEQTLHYLRALREKTVPVYSHSYAGRPPVPDGGKE*
Ga0126376_1231061023300010359Tropical Forest SoilDMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS*
Ga0126372_1084968313300010360Tropical Forest SoilSKYMSNREVIEYLYRLRERTVPVYSHSYAGRPPVPDKAEE*
Ga0126378_1205364713300010361Tropical Forest SoilMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0126378_1277669713300010361Tropical Forest SoilPLADMVHAERFDMSKYMSNREVIEYLYGLREKTVPLYSHSYAGRPPIPDKAEE*
Ga0126377_1146277413300010362Tropical Forest SoilMSNKDVVEYLYRLREKTVPVYSHSYAGRPPVADKPKE*
Ga0126377_1206294823300010362Tropical Forest SoilDDMVHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGNG*
Ga0126379_1026509013300010366Tropical Forest SoilMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDADKK*
Ga0126379_1170087813300010366Tropical Forest SoilLDDMVHHEKFDMSKYMTNEQVVKYLYGLREKTVPVYSHSYTGRPPVPDGEKG*
Ga0126379_1385467513300010366Tropical Forest SoilREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE*
Ga0126381_10035327313300010376Tropical Forest SoilKYMSNEEVIRYLYSLREKTVPVYSHSYAGRPPVPDTGKA*
Ga0126381_10267674023300010376Tropical Forest SoilHEKFDMAKYMSNEEVIRYLYSLREKTVPVYSHSYAGRPPVPDTGKA*
Ga0136449_10053176923300010379Peatlands SoilMVHRERYEMSKYMTNEQVVKYLYDLREKTVPVYGHFTSGRPGVRDQT*
Ga0126383_1008714413300010398Tropical Forest SoilEQTLHYLRGLREKTVPVYSHSYAGRPPMPDGGKE*
Ga0126383_1016816333300010398Tropical Forest SoilEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS*
Ga0126383_1345639423300010398Tropical Forest SoilKYMTNEQVLKYLYALREKTVPVYSHSYTGRPPVPDAGKE*
Ga0124844_127216913300010868Tropical Forest SoilEERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDK*
Ga0137391_1099793133300011270Vadose Zone SoilDDMVHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKE*
Ga0137389_1083751513300012096Vadose Zone SoilMVHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKA*
Ga0137388_1080793523300012189Vadose Zone SoilHHEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKK*
Ga0137388_1166365013300012189Vadose Zone SoilEKFDMSKYMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDRGKE*
Ga0126369_1232513713300012971Tropical Forest SoilMTNEQVLKYLYGLREKTVPVYSHSYTGRPPVPDGGKG*
Ga0126369_1319705823300012971Tropical Forest SoilSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS*
Ga0126369_1341272413300012971Tropical Forest SoilEQCLKYLYALREKTVPVYSHSYTGRPPLPGGGKG*
Ga0182033_1122332813300016319SoilHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0182035_1083836713300016341SoilPLEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0182034_1079975223300016371SoilLEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0182040_1146294123300016387SoilAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0182037_1151507913300016404SoilRPLEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0182038_1100557123300016445SoilSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE
Ga0182038_1208946213300016445SoilEQALQYLYALREKTVPVYSHSYAGRPPVPDTGQPAGGKG
Ga0210410_1170213013300021479SoilEDMVHAERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0126371_1035320813300021560Tropical Forest SoilDMVHHEKFDMSKYMSNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKS
Ga0126371_1376316913300021560Tropical Forest SoilNEQVIRYLYSLREKTVPVYSHSYAGRPPVPDAGKK
Ga0207684_1050768423300025910Corn, Switchgrass And Miscanthus RhizosphereSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0209517_1062802513300027854Peatlands SoilNEQVLQYLYALREKTVPVYSHSYAGRPPTPLPKGSE
Ga0209465_1013493113300027874Tropical Forest SoilHYDKFDMTKYMSNEEVIRYLYALREKTVPVYSHSYAGRPPVPDPGKA
Ga0209465_1033734223300027874Tropical Forest SoilAERFDISKYMSNREVIEYLYRLREKTMPVYSHSYAGRPPVPDKAEE
Ga0209283_1019764333300027875Vadose Zone SoilKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0209069_1005018213300027915WatershedsMSKYMSNEQVIQYLYGLREKTVPVYSHSYTGRPPAPHDGKE
Ga0302178_1054005123300030013PalsaDKFDMSKYMTNEQILHYLHGLREKTVPVYSHSYAGRPPVPDGGKE
Ga0318541_1016873413300031545SoilDMVHRDRFDMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE
Ga0318528_1000389563300031561SoilVHAERFDMSKYMSNREVVEYLYRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0318515_1011089313300031572SoilRPLEDMVHRDRFDMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE
Ga0318555_1000815543300031640SoilHRPLGDMVHEERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0318560_1025235413300031682SoilDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318493_1089849723300031723SoilYMSNREVVEYLYRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0318502_1039277023300031747SoilLEDMVHAERFDMSKYMSNREVIEYLYGLREKTVPLYSHSYAGRPPIPDKAEE
Ga0318535_1014120413300031764SoilMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE
Ga0318526_1035097023300031769SoilSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318546_1021791713300031771SoilDMVHEERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0318546_1066724623300031771SoilNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE
Ga0318543_1006816813300031777SoilERFDLSKYMSNREVIEYLCRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0318566_1001281113300031779SoilHEERFDLSKYMSNREVIEYLCRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0318567_1036038423300031821SoilLEDMVHAERFDMSKYLSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318567_1079907613300031821SoilVHAERFDVSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE
Ga0318517_1025517623300031835SoilRFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318527_1053003423300031859SoilVHCDRFDMSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE
Ga0318495_1025673113300031860SoilEDMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0306925_1219747023300031890SoilMVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPAPDKAKE
Ga0318536_1021362813300031893SoilRPLGDMVHEERFDLSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0302322_10328745013300031902FenMTNEQILQYLRALREKTVPVYSHSYAGRPPVPQDGGGR
Ga0302322_10353322523300031902FenNEQTLQYLYALREKTVPVYSHSYAGRPPVPDGGKG
Ga0318530_1023798023300031959SoilEMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318531_1042159723300031981SoilRPLEDMVHAERFDVSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAQE
Ga0318569_1027858613300032010SoilDRVHAERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318507_1032762923300032025SoilERFDMSKYMSNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318504_1037626223300032063SoilKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE
Ga0318525_1024493813300032089SoilNREVIEYLYRLREKTVPVYSHSYAGRPPVPDKAEE
Ga0318540_1024639013300032094SoilDIVHEERFDLSKYMSNREVIEYLCRLREKTVPVYSHSYAGRPPVPDKAKE
Ga0311301_1047972023300032160Peatlands SoilMVHRERYEMSKYMTNEQVVKYLYDLREKTVPVYGHFTSGRPGVRDQT
Ga0306920_10255855713300032261SoilSKYMTNEQTLQYLYALREKTVPVYSHSYQGRPPVSDGGKE


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