NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095608

Metagenome Family F095608

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095608
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 60 residues
Representative Sequence MRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI
Number of Associated Samples 73
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 11.43 %
% of genes near scaffold ends (potentially truncated) 23.81 %
% of genes from short scaffolds (< 2000 bps) 84.76 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (66.667 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(70.476 % of family members)
Environment Ontology (ENVO) Unclassified
(86.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(86.667 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78
1JGI25133J35611_100082495
2JGI25133J35611_100371203
3Ga0066858_100509731
4Ga0075108_100827394
5Ga0075119_10847322
6Ga0082015_10115482
7Ga0068487_10720565
8Ga0068501_11646542
9Ga0068499_10014633
10Ga0068499_10752004
11Ga0098070_1031753
12Ga0098035_10260025
13Ga0098035_10946882
14Ga0098035_11679972
15Ga0098058_10470365
16Ga0098058_11790791
17Ga0098040_10163873
18Ga0098040_10255415
19Ga0098040_10964813
20Ga0098040_11086843
21Ga0098040_11312503
22Ga0098040_12417772
23Ga0098048_10201454
24Ga0098048_11542032
25Ga0098039_11482362
26Ga0098044_10664931
27Ga0098044_11547391
28Ga0098044_12814102
29Ga0098044_12942742
30Ga0098071_1089751
31Ga0098071_1156882
32Ga0098055_10995021
33Ga0098055_12386633
34Ga0098053_11022211
35Ga0098051_10768501
36Ga0098041_10395683
37Ga0098041_10598992
38Ga0098036_10342762
39Ga0098036_10757692
40Ga0098064_1505762
41Ga0075110_10273755
42Ga0105020_11076172
43Ga0110931_12512711
44Ga0098052_11756802
45Ga0098052_12297622
46Ga0098062_10390761
47Ga0114898_12032192
48Ga0114899_10247373
49Ga0115652_10712401
50Ga0114918_105354951
51Ga0114995_103199982
52Ga0114993_105501932
53Ga0114993_108661381
54Ga0114902_11711441
55Ga0114909_10980713
56Ga0114994_1004441810
57Ga0114997_101354225
58Ga0114997_101984454
59Ga0114997_104155582
60Ga0114925_102833623
61Ga0115011_100226612
62Ga0115011_115237601
63Ga0105236_10233031
64Ga0115000_109564222
65Ga0114999_112474532
66Ga0098056_12939211
67Ga0098061_10858484
68Ga0098059_12076473
69Ga0098047_102018591
70Ga0098047_104008891
71Ga0133547_115882124
72Ga0181432_11267564
73Ga0211646_102185781
74Ga0211552_102331233
75Ga0211543_101203885
76Ga0211503_101401643
77Ga0226832_100179463
78Ga0222631_10061582
79Ga0208012_10133042
80Ga0208792_10919751
81Ga0208434_10841701
82Ga0208158_10919873
83Ga0209349_10723343
84Ga0208433_11079002
85Ga0208919_11324581
86Ga0209128_10963621
87Ga0208299_10261134
88Ga0208299_11041682
89Ga0208299_11166171
90Ga0208299_11871642
91Ga0208299_12005382
92Ga0209756_100664113
93Ga0209756_101510312
94Ga0209756_12066321
95Ga0208813_10168763
96Ga0209710_10225462
97Ga0209502_103142552
98Ga0209404_100516264
99Ga0307986_103388382
100Ga0310344_100167582
101Ga0315333_105378202
102Ga0310345_110907423
103Ga0310342_1006389363
104Ga0310342_1009739093
105Ga0310342_1024103841
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 12.36%    β-sheet: 32.58%    Coil/Unstructured: 55.06%
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Original

Variant

51015202530354045505560MRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRISequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.71
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Structural matches with SCOPe domains



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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
33.3%66.7%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Seawater
Marine Oceanic
Marine
Deep Subsurface
Marine
Marine
Seawater
Marine
Marine
Hydrothermal Vent Fluids
Seawater
Saline Lake
Saline Water
70.5%4.8%4.8%3.8%2.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25133J35611_1000824953300002514MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALSYTNKKGNYIMHNIARGRRV*
JGI25133J35611_1003712033300002514MarineMRYKFKILDGDTGQTTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0066858_1005097313300005398MarineMRYKFKILNGDTGETTEKEGISFKKMLKSLVNPNPKFEGAISYTNKKGRYVCHSISKGKRI*
Ga0075108_1008273943300005913Saline LakeMRYKFKILDGDTGVMTDTENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYFCHTISNGKKI*
Ga0075119_108473223300005931Saline LakeMKYKFKILDGDTGTMTDTENMSYKKVLKSLTAINPKYNGAIYYTNKNDNYICHTISNGKKI*
Ga0082015_101154823300006090MarineMRYKFKILNGDTGETTEKEGMSFKKMLKSLVNPNPKFEGAISYTNKKGRYVCHSISKGKRI*
Ga0068487_107205653300006315MarineMRYKFKILDDDTGQTTETENMSYKKALKHILITKPKFNGALSYTNKKGNYVMHSINNGKRI*
Ga0068501_116465423300006325MarineMKIKNRYKFKVLNGDTGENSEMEAMSFKKALKSLVNTNPKFNGALYYTNKKGKYVMHSIEKGKKQNG*
Ga0068499_100146333300006327MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0068499_107520043300006327MarineMRYKFKIVDGDTGDNSETENMSFKKAVKSLLITKPKFNGTISYTNKKENYVTHSFANGRDNTYGD*
Ga0098070_10317533300006726MarineMRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0098035_102600253300006738MarineMRYKFKILDGDTGENKETENMSYKKALKHILITKPKFNGALYYTNKKGNSITHNISNGKRVS*
Ga0098035_109468823300006738MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIAGGKRV*
Ga0098035_116799723300006738MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVTHSISNGKRI*
Ga0098058_104703653300006750MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNSITHNIS
Ga0098058_117907913300006750MarineDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0098040_101638733300006751MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRS*
Ga0098040_102554153300006751MarineMKYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRR*
Ga0098040_109648133300006751MarineMRYKFKILDGDTGENTETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIIHNVSQGRRV*
Ga0098040_110868433300006751MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSIQNGKRI*
Ga0098040_113125033300006751MarineMRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKG
Ga0098040_124177723300006751MarineMRYKFKILDGDTGVNSETEDMSYKKALKRILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0098048_102014543300006752MarineMRYKFKILDGDTGENSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIIHNVSQGRRV*
Ga0098048_115420323300006752MarineMRYKFKILDGDTGVNSETENMSFKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0098039_114823623300006753MarineMRYQFKILDGDTGENSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHNIAGGKRV*
Ga0098044_106649313300006754MarineMRYQFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIANGKRV*
Ga0098044_115473913300006754MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGK
Ga0098044_128141023300006754MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIAGGKRV*
Ga0098044_129427423300006754MarineMRYKFKILNGDTGESTETENMSFKKAFKHLLITKPKFNGAFSYTNKKGNYVMHNISQGRRV*
Ga0098071_10897513300006768MarineMRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIANGKRV*
Ga0098071_11568823300006768MarineMRYKFKILNGDTGENTETENMSYKKALKHILIAKPKFNGALYYTNKKGNYITHNISNGKRVS*
Ga0098055_109950213300006793MarineMKYTFEILNGDNGEKTKKDAMSYKKALKSILVSNPKFNGALYYTNKKGKYVMHSISNGKRI*
Ga0098055_123866333300006793MarineMRYKFKILDGDTGVNSETENMSYKKTLKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0098053_110222113300006923MarineFKILDNDTGQTTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVTHSISNGKRI*
Ga0098051_107685013300006924MarineIMKYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRR*
Ga0098041_103956833300006928MarineMRYQFKILDGDTGENSETKNMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHNIAGGKRV*
Ga0098041_105989923300006928MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIANGKRV*
Ga0098036_103427623300006929MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVTHSISNGKRS*
Ga0098036_107576923300006929MarineMRYKFKILDGDTGVNSETENMSFKKALKHILITKPKFNGALYYTNKKGNYVMHSIANGKENTYGD*
Ga0098064_15057623300006988MarineMRYKFKILDGDTGENAETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKKI*
Ga0075110_102737553300007074Saline LakeMRYKFKILDGDTGVMTDTENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYVCHSIDKGKKI*
Ga0105020_110761723300007514MarineMRYKFKILDGDTGENSETENMSFKKAVKHLLITKPKFNGAIYYTNKKGNYVMHSFANGRNNTYGD*
Ga0110931_125127113300007963MarineILDGYTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRL*
Ga0098052_117568023300008050MarineMRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIAKGKRV*
Ga0098052_122976223300008050MarineYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI*
Ga0098062_103907613300008051MarineMRYQFKILDGDTGENSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHSIANGKRV*
Ga0114898_120321923300008216Deep OceanMRYKFKILDGDTGINSETENMSFKKALKHLLITKPKFNGALYYTNKKGNYVMHNINNGKIIH*
Ga0114899_102473733300008217Deep OceanMRYKFKILDGDTGINSETENMSFKKALKHLLITKPKFNGALYYTNKKGNYVMHNSNNGKIIH*
Ga0115652_107124013300008624MarineMRYKFKILDGDTGENAETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKK
Ga0114918_1053549513300009149Deep SubsurfaceMKYKFEIIDGDKGEKTEAENMSYKKLLKSLVAINPKFNGAIYYTNKKGKYIC
Ga0114995_1031999823300009172MarineMRYKFKILDGDTGVMTETENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYVCHSIDKGKKI*
Ga0114993_1055019323300009409MarineMKIKNRYKFKILNGDTGEMTETENMSYKKTLKSLVNTNPKYNGAIYYTNKKGKYICHSISKGKKI*
Ga0114993_1086613813300009409MarineMKIKNRYKFEILDRDTGEKTKTENMSYKKVLKSLVNINPKFNGAIYYTNKKEKYVMH
Ga0114902_117114413300009413Deep OceanMRYKFKILDGDTGINSETENMSFKKALKHLLITKPKCNGALYYTNKKGNYVMHNINNGKIIH*
Ga0114909_109807133300009414Deep OceanMRYKFKILDGDTGINSETENMSFKKALKHLLITKPKFNGALYYTNKKGNYVMHNIN
Ga0114994_10044418103300009420MarineMKYKFKILDGDTGTMTDTENMSYKKVLKSLTSINPKYNGAIYYTNKKGKYICHSISKGKKI*
Ga0114997_1013542253300009425MarineMRYKFKILDGDTGTMTDTENMSYKKVLKSLTSINPKYNGAIYYTNKKGKYI*
Ga0114997_1019844543300009425MarineMRYKFKILDGDTGVMTETENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYVCHSISKGKKI*
Ga0114997_1041555823300009425MarineMKYKFEIIDGDKGEKTEAENMSYKKLLKSLVAINPKFNGAIYYTNKNGKYICHSISKGKKI*
Ga0114925_1028336233300009488Deep SubsurfaceMRYKFKILDGDTGENSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHNIAGGKRV*
Ga0115011_1002266123300009593MarineMRYIFKILDGDTGKETETQDMSFKKALKKIITTNPKFNGALYYTNKKGKYVCHSISKGKKI*
Ga0115011_1152376013300009593MarineKEIMRYKFKILDGDTGKTSETENMSFKKAFKHLLVMNPKFNGAFYYTNKKGNYVMHSISNGKVVH*
Ga0105236_102330313300009619Marine OceanicMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYV
Ga0115000_1095642223300009705MarineMRYKFKILDGDTGTMTDTENMSYKKVLKSLTSINPKYNGAIYYTNKKGKYICHSISKGKKI*
Ga0114999_1124745323300009786MarineMKIKNRYKFKILNGDTGEMTETENMSYKKTLKSLVNTNPKYNGAIYYTNKNGKYICHSISKGKKI*
Ga0098056_129392113300010150MarineLDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSIQNGKRI*
Ga0098061_108584843300010151MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSIEKGRKI*
Ga0098059_120764733300010153MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRF*
Ga0098047_1020185913300010155MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNY
Ga0098047_1040088913300010155MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISN
Ga0133547_1158821243300010883MarineMKIKNRYKFEILDRDTGEKTKTENMSYKKVLKSLVNINPKFNGAIYYTNKKEKYVMHSIVNGKKIYENN*
Ga0181432_112675643300017775SeawaterMKIKNRYKFKVLNGDTGENSEMKAMSFKKALKSLVNTNPKFNGALYYTNKKGKYVMHSIEKGNPP
Ga0211646_1021857813300020383MarineMRYKFKILNGDTGETTEKEGMSFKKMLKSLVNPNPKFEGAISYTNKKGRYVCHSISKGKR
Ga0211552_1023312333300020412MarineMRYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKR
Ga0211543_1012038853300020470MarineMRYKFKILDGDTGKNSETENMSFKKALKHLLITNPKFNGAFYYTNKKGNYVMHSISNGKR
Ga0211503_1014016433300020478MarineMRYKFKILDGDTGKNSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHSIANGKR
Ga0226832_1001794633300021791Hydrothermal Vent FluidsMRYKFKILDGDTGENSETENMSFKKAVKHLLITKPKFNGAIYYTNKKGNYVMHSFANGRNNTYGD
Ga0222631_100615823300022843Saline WaterMRYKFKILDGDTGVMTDTENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYVCHSIDKGKK
Ga0208012_101330423300025066MarineMRYKFKILDGDTGENTETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIIHNVSQGRR
Ga0208792_109197513300025085MarineMRYKFKILDGDTGENKETENMSYKKALKHILITKPKFNGALYYTNKKGNSITHNISNGKRVS
Ga0208434_108417013300025098MarineIMKYKFKILDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRR
Ga0208158_109198733300025110MarineMRYQFKILDGDTGENSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHNIAGGKR
Ga0209349_107233433300025112MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIAGGKR
Ga0208433_110790023300025114MarineMRYKFKILDGDTGVNSETEDMSYKKALKRILITKPKFNGALYYTNKKGNYVMHSISNGKR
Ga0208919_113245813300025128MarineMRYKFKILDGDTGVNSETENMSFKKALKHILITKPKFNGALYYTNKKGNYVMHSIANGKENTYGD
Ga0209128_109636213300025131MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALSYTNKKGNYIMHNIARGKR
Ga0208299_102611343300025133MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVTHSISNGKR
Ga0208299_110416823300025133MarineMRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYIMHSIAKGKR
Ga0208299_111661713300025133MarineLDGDTGENSETENMSFKKALKHLLITKPKFNGALFYTNKKGNYIMHNIAGGKRV
Ga0208299_118716423300025133MarineMRYKFKILDGDTGENTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKR
Ga0208299_120053823300025133MarineLDGDTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRI
Ga0209756_1006641133300025141MarineMRYKFKILDGDTGQTTETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKR
Ga0209756_1015103123300025141MarineMRYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALSYTNKKGNYIMHNIARGRR
Ga0209756_120663213300025141MarineMKYKFKILDGDTGENSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVTHSISNGKR
Ga0208813_101687633300025270Deep OceanMRYKFKILDGDTGINSETENMSFKKALKHLLITKPKFNGALYYTNKKGNYVMHNINNGKIIH
Ga0209710_102254623300027687MarineMRYKFKILDGDTGVMTETENMSYKKVLKSLVAINPKYNGAIYYTNKKNNYVCHSIDKGKK
Ga0209502_1031425523300027780MarineMKYKFEIIDGDKGEKTEAENMSYKKLLKSLVAINPKFNGAIYYTNKNGKYICHSISKGKK
Ga0209404_1005162643300027906MarineMRYIFKILDGDTGKETETQDMSFKKALKKIITTNPKFNGALYYTNKKGKYVCHSISKGKK
Ga0307986_1033883823300031659MarineMKYKFKILDGDTGTMTDTENMSYKKVLKSLTSINPKYNGAIYYTNKNDNYICHTISNGKK
Ga0310344_1001675823300032006SeawaterMRYKFKIVDGDTGDNSETENMSFKKAVKSLLITKPKFNGTISYTNKKENYVTHSFANGRDNTYGD
Ga0315333_1053782023300032130SeawaterTGVNSETENMSYKKALKHILITKPKFNGALYYTNKKGNYVMHSISNGKRS
Ga0310345_1109074233300032278SeawaterDWRFKIKRRSQVNMKYKFEILNGDNGEKTEAENMSYKKMLKSILQTQPKFNGALYYTNKKGRYVMHSIQNGKRI
Ga0310342_10063893633300032820SeawaterKILDDDTGQTTETENMSYKKALKHILITKPKFNGALSYTNKKGNYVMHSINNGKRI
Ga0310342_10097390933300032820SeawaterMKIKNRYKFKVLNGDTGENSEMEAMSFKKALKSLVNTNPKFNGALYYTNKKGKYVMHSIEKGKKQNG
Ga0310342_10241038413300032820SeawaterMKYKFEILNGDNGEKTEAENMSYKKMLKSILQTKPKFNGALYYTNKKGKYVMHSIQNGKR


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