Metagenome / Metatranscriptome Family F095655

Basic Information
Family ID	F095655
Family Type	Metagenome / Metatranscriptome
Number of Sequences	105
Average Sequence Length	85 residues
Representative Sequence	LDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAG
Number of Associated Samples	87
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.90 %
% of genes near scaffold ends (potentially truncated)	88.57 %
% of genes from short scaffolds (< 2000 bps)	94.29 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (76.190 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.000 % of family members)
Environment Ontology (ENVO)	Unclassified (28.571 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (54.286 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142. 1JGI24749J21850_10339121 2JGI24036J26619_100379382 3JGI24033J26618_10185881 4Ga0063356_1006311983 5Ga0063356_1020492712 6Ga0063356_1025802152 7Ga0063356_1049234881 8Ga0062595_1003131171 9Ga0062595_1003481821 10Ga0062595_1026809521 11Ga0062592_1003024602 12Ga0062592_1024286221 13Ga0066683_105164741 14Ga0065712_103918932 15Ga0065705_104956752 16Ga0066388_1010538251 17Ga0070666_104415951 18Ga0070666_108151162 19Ga0070694_1010868171 20Ga0070663_1004547422 21Ga0070678_1004056072 22Ga0070698_1015336462 23Ga0070672_1002148221 24Ga0070702_1006485462 25Ga0066903_1083395322 26Ga0068858_1001626951 27Ga0097621_1007783951 28Ga0066665_110963401 29Ga0079220_117975811 30Ga0075421_1014443501 31Ga0075429_1014073451 32Ga0099795_103911551 33Ga0105244_104683641 34Ga0111539_118883451 35Ga0111539_123964861 36Ga0075418_108001702 37Ga0105243_119736101 38Ga0105242_121336822 39Ga0105249_103698873 40Ga0105249_104736752 41Ga0105347_13894022 42Ga0105252_101933062 43Ga0126384_101480723 44Ga0105239_119907871 45Ga0126383_117668912 46Ga0137432_10365083 47Ga0157300_10270682 48Ga0157282_101770621 49Ga0157286_101135231 50Ga0157301_102497872 51Ga0157306_103266512 52Ga0157298_100843932 53Ga0157378_114865012 54Ga0157378_131304031 55Ga0157375_125422602 56Ga0173480_100795431 57Ga0180067_10721832 58Ga0132258_133492802 59Ga0132256_1011534922 60Ga0132256_1035374151 61Ga0132257_1010517212 62Ga0132257_1036203331 63Ga0190266_100149223 64Ga0190266_104229472 65Ga0190270_100868242 66Ga0190274_106418892 67Ga0190274_130280522 68Ga0190271_102287851 69Ga0190271_107350103 70Ga0173482_107975232 71Ga0173479_102480891 72Ga0210383_107010871 73Ga0247790_100783322 74Ga0207669_101277233 75Ga0207711_102386883 76Ga0207712_108971412 77Ga0207668_120207392 78Ga0207668_120517331 79Ga0207703_104546751 80Ga0209982_10742512 81Ga0209579_107575622 82Ga0209481_101287332 83Ga0209481_102080532 84Ga0209382_120563432 85Ga0209583_107405321 86Ga0268265_100939993 87Ga0247819_101769461 88Ga0247825_109969911 89Ga0247827_108948461 90Ga0308189_101320793 91Ga0307499_100064453 92Ga0310888_100960761 93Ga0310888_106331842 94Ga0310813_110162471 95Ga0310891_100914152 96Ga0308175_1008606651 97Ga0310890_102767361 98Ga0310895_107063551 99Ga0307415_1000646601 100Ga0315910_101892833 101Ga0315912_109768721 102Ga0310889_105402312 103Ga0306920_1004822881 104Ga0314783_015202_3_317 105Ga0370497_0019246_3_251
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142. 1JGI24749J21850_10339121 2JGI24033J26618_10185881 3Ga0063356_1006311983 4Ga0063356_1020492712 5Ga0063356_1025802152 6Ga0063356_1049234881 7Ga0062595_1026809521 8Ga0062592_1003024602 9Ga0066683_105164741 10Ga0065705_104956752 11Ga0066388_1010538251 12Ga0070694_1010868171 13Ga0068858_1001626951 14Ga0097621_1007783951 15Ga0075421_1014443501 16Ga0099795_103911551 17Ga0111539_123964861 18Ga0075418_108001702 19Ga0126384_101480723 20Ga0132258_133492802 21Ga0132256_1011534922 22Ga0132256_1035374151 23Ga0132257_1010517212 24Ga0190266_104229472 25Ga0190271_107350103 26Ga0209982_10742512 27Ga0209579_107575622 28Ga0209481_101287332 29Ga0209481_102080532 30Ga0209382_120563432 31Ga0209583_107405321 32Ga0247825_109969911 33Ga0308189_101320793 34Ga0310813_110162471 35Ga0308175_1008606651 36Ga0310889_105402312 37Ga0370497_0019246_3_251
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80 1Ga0105243_119736101 2Ga0063356_1006311983 3Ga0063356_1020492712 4Ga0063356_1025802152 5Ga0065705_104956752 6Ga0066388_1010538251 7Ga0070694_1010868171 8Ga0066903_1083395322 9Ga0068858_1001626951 10Ga0066665_110963401 11Ga0075421_1014443501 12Ga0099795_103911551 13Ga0111539_118883451 14Ga0111539_123964861 15Ga0105249_103698873 16Ga0137432_10365083 17Ga0157282_101770621 18Ga0157378_131304031 19Ga0132258_133492802 20Ga0132256_1035374151 21Ga0132257_1010517212 22Ga0132257_1036203331 23Ga0190266_104229472 24Ga0190271_107350103 25Ga0207711_102386883 26Ga0207712_108971412 27Ga0209579_107575622 28Ga0209481_102080532 29Ga0209382_120563432 30Ga0209583_107405321 31Ga0247825_109969911 32Ga0308189_101320793 33Ga0310813_110162471 34Ga0308175_1008606651 35Ga0310890_102767361 36Ga0307415_1000646601 37Ga0315912_109768721 38Ga0310889_105402312 39Ga0370497_0019246_3_251
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 1.85% Coil/Unstructured: 42.59%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF07883	Cupin_2	38.10
PF02311	AraC_binding	5.71
PF00903	Glyoxalase	2.86
PF04072	LCM	2.86
PF08379	Bact_transglu_N	1.90
PF12847	Methyltransf_18	0.95
PF13561	adh_short_C2	0.95
PF11746	DUF3303	0.95
PF13847	Methyltransf_31	0.95
PF03551	PadR	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.86
COG1305	Transglutaminase-like enzyme, putative cysteine protease	Posttranslational modification, protein turnover, chaperones [O]	1.90
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.95
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.95
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.95
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.95
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	0.95
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.95
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	0.95
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.95

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	76.19 %
Unclassified	root	N/A	23.81 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.19 %
Unclassified	root	N/A	23.81 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.19 %
Unclassified	root	N/A	23.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	53.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.81 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.95 %
Unclassified	root	N/A	23.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.95 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.90 %
Unclassified	root	N/A	23.81 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.81 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.81 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.95 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.95 %
Unclassified	root	N/A	23.81 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.81 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.95 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.95 %
Unclassified	root	N/A	23.81 %
unclassified Xanthomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.81 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.95 %
Unclassified	root	N/A	23.81 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.95 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.81 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.95 %
Actinokineospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora	0.95 %
Unclassified	root	N/A	23.81 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.90 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.81 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.95 %
Actinokineospora inagensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora inagensis	0.95 %
Unclassified	root	N/A	23.81 %
Xanthomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1.90 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002076\|JGI24749J21850_1033912	All Organisms → cellular organisms → Bacteria → Acidobacteria	738	Open in IMG/M
3300002128\|JGI24036J26619_10037938	All Organisms → cellular organisms → Bacteria → Acidobacteria	925	Open in IMG/M
3300002155\|JGI24033J26618_1018588	All Organisms → cellular organisms → Bacteria → Acidobacteria	875	Open in IMG/M
3300004463\|Ga0063356_100631198	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300004463\|Ga0063356_102049271	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	867	Open in IMG/M
3300004463\|Ga0063356_102580215	Not Available	780	Open in IMG/M
3300004463\|Ga0063356_104923488	All Organisms → cellular organisms → Bacteria → Acidobacteria	574	Open in IMG/M
3300004479\|Ga0062595_100313117	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300004479\|Ga0062595_100348182	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300004479\|Ga0062595_102680952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora inagensis	501	Open in IMG/M

Showing 1 to 10 of 105 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.14%
Host-Associated	Host-Associated	42.86%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.76%
Plants	Host-Associated → Plants	42.86%
Terrestrial	Environmental → Terrestrial	52.38%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.29%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.62%
Roots	Host-Associated → Plants → Roots	0.95%
Sediment	Environmental → Aquatic → Sediment	4.76%
Soil	Environmental → Terrestrial → Soil	52.38%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.52%
Loam	Environmental → Terrestrial → Soil → Loam	4.76%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.57%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.81%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.95%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	10.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.05%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.57%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.95%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.76%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.95%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.95%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.95%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	10.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.76%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.95%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.90%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.95%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.95%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.95%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M

Showing 1 to 10 of 87 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24749J21850_10339121	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	GEREFLREFGLELREAFPVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
JGI24036J26619_100379382	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	ESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
JGI24033J26618_10185881	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	TRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0063356_1006311983	3300004463	Arabidopsis Thaliana Rhizosphere	RFLNLTRDEPWVFGLPVGGEREFLREFGLELREAFTIGGEESLRRYLTRADGTQVGAQAVAEMMARMAERAGQSPEGQPIPPERTQEQQRLMAYQLAEAVVAPRE*
Ga0063356_1020492712	3300004463	Arabidopsis Thaliana Rhizosphere	VGGEESIKRYLTRADGTQVGAQAVAEAMARMAQRAQGPGQSSPEGRSMSPERMREQQRLMAYQLAEAVVVRPE*
Ga0063356_1025802152	3300004463	Arabidopsis Thaliana Rhizosphere	REFLNEFGLELREILTVGGEESIKRYLTRSDGTQVGAQTIAEAMARMSERARAAAPSAPESQRLSLERTPEQQRLMAYQLAEAVVAPPAMVGPAAL*
Ga0063356_1049234881	3300004463	Arabidopsis Thaliana Rhizosphere	EREFLREFGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0062595_1003131171	3300004479	Soil	MFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0062595_1003481821	3300004479	Soil	VGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0062595_1026809521	3300004479	Soil	AAARPFVQRFIDLTRNEPWVFGIPVDGECAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAMAEAMALMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0062592_1003024602	3300004480	Soil	IPVGGERSFLSEVGLELREALAIGGEESINRYATKADGTQIGAQAMAEGMARMAQRAREAGAASPEARAIDPERMREQQRTMAYQLAEAVVR*
Ga0062592_1024286221	3300004480	Soil	EMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAFVAH*
Ga0066683_105164741	3300005172	Soil	REREFLNDFGFELRETLTVGGEESLKRYLTRADGTEIGAQTIAEAMARMSARTRAAGSEGAQLPPERTPEQQRLMAYQLAEAVVASSSIV*
Ga0065712_103918932	3300005290	Miscanthus Rhizosphere	EAFPVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0065705_104956752	3300005294	Switchgrass Rhizosphere	FGLELREAFAIGGEESLKRYVTKADGTQVGAQAIAEAMARMAQRAGAAGQSPPPAQQMSPEQMREQQRLMAYQLAEAIVSG*
Ga0066388_1010538251	3300005332	Tropical Forest Soil	RYVTTADGTQLGAATIAAAIARLRQRIQEAGESMPQMQMTPEQMREQQRLMAYQLAEASVPTPP*
Ga0070666_104415951	3300005335	Switchgrass Rhizosphere	REMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0070666_108151162	3300005335	Switchgrass Rhizosphere	MFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0070694_1010868171	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	HELGLDLREAFMIGGEESLKRYVTRADGTQLGAEAMAAAMARMRERMQAAGQAPPQGQAPAGQTSPERMREQQRLSAYQLAEAVVPAG*
Ga0070663_1004547422	3300005455	Corn Rhizosphere	VGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0070678_1004056072	3300005456	Miscanthus Rhizosphere	LTKNEPWVFGLPVGGEREFLREFGLEVREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANPSPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0070698_1015336462	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	EFLNDFGFELREMLTVGGEESLKRYLTRADGTAIGAQTIAEAMARMSARAQAAGSAGTQLSPERTPEQQRLMAYQLAEAVVASSPIVRA*
Ga0070672_1002148221	3300005543	Miscanthus Rhizosphere	GEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0070702_1006485462	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	EFGLELREAFPVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0066903_1083395322	3300005764	Tropical Forest Soil	GERAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0068858_1001626951	3300005842	Switchgrass Rhizosphere	EREFLSEFGLELREAFMIGGEDSLKRYLTRADGTQVGAQALAEGMARMAERAQAAGQQMPPQRTPEQQRLMAYQLAEAVVAPRG*
Ga0097621_1007783951	3300006237	Miscanthus Rhizosphere	FAVGGEESLKRYLTKADGTQVGAQALAEAMARMAERARAAGQSAPEGPQGSSSERMQEQQRAMAYQMAEAVVT*
Ga0066665_110963401	3300006796	Soil	EFLNDFGFELRETLTVGGEESLKRYLTRADGTEIGAQTIAEAMARMSARTRAAGSEGAQLPPERTPEQQRLMAYQLAEAVVASSSIG*
Ga0079220_117975811	3300006806	Agricultural Soil	WVFGIPVDGERAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAIAEAMARMRERMQEQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0075421_1014443501	3300006845	Populus Rhizosphere	PVGAEKTFLNECGLELREAMTIGGPESIARYATKPDGTQIGAAAIAEGMARMAERARQAGPSSPEAQALSPERMREQQRTMAYQLAEAVVPTDSRRTEGTQTLRTH*
Ga0075429_1014073451	3300006880	Populus Rhizosphere	DEPWVFGIPVGREREFLAEFGLELREAFAVGGEESLKRYVTKADGTQVGAQAIAEAMARMAQRAGAAGQSPPPAQQMSPEQMREQQRLMAYQLAEAIVSG*
Ga0099795_103911551	3300007788	Vadose Zone Soil	TRNEPWVFGLPVGGEREFLGELGLDLREAFTIGSEESLKRYLTKADGSQVGAQAVAEAMARMAERTPAGGQSAPGNQPPSPERTREQQRLMAYQLAEAVVARRG*
Ga0105244_104683641	3300009036	Miscanthus Rhizosphere	LIKDEPWVFGLPEEGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0111539_118883451	3300009094	Populus Rhizosphere	IPVGGERTFLSEVGLELREALTIGGEESLTRYATKADGTQIGAEAIAESMARMAQRAREAGAASPEARAIDPQRMREQQRTMAYQLAEAIVR*
Ga0111539_123964861	3300009094	Populus Rhizosphere	FGLELREAFTIGGEESLKRYLTKADGSQVGAEAVAAAMARMAEHRRATGPAPEGQQMPTERTREQQRLMSYQLAEAVVARRG*
Ga0075418_108001702	3300009100	Populus Rhizosphere	VFGIPVGGEREFLAEFGLERREAFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQMAEAVVAG*
Ga0105243_119736101	3300009148	Miscanthus Rhizosphere	LDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0105242_121336822	3300009176	Miscanthus Rhizosphere	RELGLDLREMFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHPAEAAVAS*
Ga0105249_103698873	3300009553	Switchgrass Rhizosphere	LREFGLELREAFTIGGEDSLKRYLTKADGTQVGARAIAEAMARMAERARAAGHSPSQGPQMPPERAREQQRLTSYQLAEAVVAPRG*
Ga0105249_104736752	3300009553	Switchgrass Rhizosphere	FAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQLAEAVVAG*
Ga0105347_13894022	3300009609	Soil	VFGLPIGGEREFLRELGLDFREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS*
Ga0105252_101933062	3300009678	Soil	VFGLPIGGEREFLRELGLDLREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS*
Ga0126384_101480723	3300010046	Tropical Forest Soil	LRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0105239_119907871	3300010375	Corn Rhizosphere	GERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0126383_117668912	3300010398	Tropical Forest Soil	AMTIGGEDSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0137432_10365083	3300011439	Soil	VGGERSFLSEVGLELREALAIGGEESLVRYATKADGTQVGAQAIAEGMARMAQRAREAGPASPEARAIDPERMREQQRTMAYQLAEALVR*
Ga0157300_10270682	3300012884	Soil	EREFLRELGLDLREMFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0157282_101770621	3300012904	Soil	LDLIKDEPWVFGLPEEGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0157286_101135231	3300012908	Soil	IKDEPWVFGLPEEGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAPAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0157301_102497872	3300012911	Soil	RELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAAAS*
Ga0157306_103266512	3300012912	Soil	WVFGLPEDGEREFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0157298_100843932	3300012913	Soil	MFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAA
Ga0157378_114865012	3300013297	Miscanthus Rhizosphere	MFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLSEAAVAS*
Ga0157378_131304031	3300013297	Miscanthus Rhizosphere	PWVFGLPLGGEREFLAELGLDLREAFTVGGEESLKRYLTRADGTQVGAQALAEATARMAARTQAVGQSAPDGQPMSAERMQERQRMMAYQLAEAVVAQPA*
Ga0157375_125422602	3300013308	Miscanthus Rhizosphere	AVGGEESLKRYLTKADGTQVGAQALAEAMARMAERARAAGQSAPEGPQGSSSERMQEQQRAMAYQMAEAVVT*
Ga0173480_100795431	3300015200	Soil	NEPWVFGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAIARMAARAREAAPASPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0180067_10721832	3300015257	Soil	EREFLHELNLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMVARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVTG*
Ga0132258_133492802	3300015371	Arabidopsis Rhizosphere	AFTIGGEESLKRYLTKADGSQVGAQTMAEAMARMAAARTAAAGQSAPEGPQMPPERTPEQQRLMSYQLAEAVVARRA*
Ga0132256_1011534922	3300015372	Arabidopsis Rhizosphere	GEREFLREFGLELREVFAVGGEESLKRFVTKADGTQVGAQAIAAAMARMAQRTQDTERPAPSPEQMARMREQQRLMGYQIAEAVVVRT*
Ga0132256_1035374151	3300015372	Arabidopsis Rhizosphere	EDSLKRYVTRSDGTLVGAEAITAAMARMTERMRAAGQSAPEGQQVASPERMQEQQRVMAYQMAEAVVAPQG*
Ga0132257_1010517212	3300015373	Arabidopsis Rhizosphere	GGEESLKRFVTRADGTQVGAEAVAAAMARMAQRAREAVESGAVQAPQLSPERMREQQRLMAYQLAEAVVA*
Ga0132257_1036203331	3300015373	Arabidopsis Rhizosphere	YVQRFLDLIKDEPWVFGMPVDGEREFLREFGLELREVFAVGGEESLKRFVTKADGTQVGAQAIAAAMARMAQRTQDTERPAPSPEQMARMREQQRLMGYQIAEAVVVRT*
Ga0190266_100149223	3300017965	Soil	MFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAAAS
Ga0190266_104229472	3300017965	Soil	LKMTRDEPWVFGLPVGGEREFLGEIGLELREAFTIGGEESAKRYLTKGDGTQVGAEAIAAAMARMAEQARTAGQSSPPGPPGPQMSPERAREQQRLMAYQLAEAVVVRT
Ga0190270_100868242	3300018469	Soil	VFGLPIGGEREFLRELGLDFREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0190274_106418892	3300018476	Soil	GLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0190274_130280522	3300018476	Soil	VFGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRAEGTQVGAQVIAEAMARMVAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0190271_102287851	3300018481	Soil	VFGLPIGGEREFLRELGLDLREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0190271_107350103	3300018481	Soil	MGAEREFLGEFGLDLREAFAIGGEESVKRYLTKADGTQVGARALAEAAKRMADQAQAAGPSTPAGPQMSPEQMREQQRVMSYQLAEAVVTRPA
Ga0173482_107975232	3300019361	Soil	EFLREFGLDVREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAFVAH
Ga0173479_102480891	3300019362	Soil	ELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0210383_107010871	3300021407	Soil	PFVQRFIDLTRNEPWVFGIPVAGARAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQMSPERLREQQGLQAYQLAEAVVPPRS
Ga0247790_100783322	3300022915	Soil	MFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0207669_101277233	3300025937	Miscanthus Rhizosphere	EFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0207711_102386883	3300025941	Switchgrass Rhizosphere	FGLELRESFAVGGEESLKRYLTKADGTQVGAQALAEAMARMAERRRAAGQSAPEGQQGPSSERMQEQQRVMAYQMAEAVVT
Ga0207712_108971412	3300025961	Switchgrass Rhizosphere	EFLAEFGLELREAFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQLAEAVVAG
Ga0207668_120207392	3300025972	Switchgrass Rhizosphere	YLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVAG
Ga0207668_120517331	3300025972	Switchgrass Rhizosphere	GEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0207703_104546751	3300026035	Switchgrass Rhizosphere	GEREFLSEFGLELREAFMIGGEDSLKRYLTRADGTQVGAQALAEGMARMAERAQAAGQQMPPQRTPEQQRLMAYQLAEAVVAPRG
Ga0209982_10742512	3300027552	Arabidopsis Thaliana Rhizosphere	ESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAPAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG
Ga0209579_107575622	3300027869	Surface Soil	PWQFGLPVGAEREFLAEFGLDLREAFAIGGEESLKRYLTRADGSQLGAQVIADARARMMQGAQAEGQPGVDGPQRSQERMREQQRLMAYQLAEAVVVRL
Ga0209481_101287332	3300027880	Populus Rhizosphere	SLARYATKADGTQVGAQAMAEGMARMAQRAREAGAASPEARAIDPERMREQQRTMAYQLAEAVVR
Ga0209481_102080532	3300027880	Populus Rhizosphere	REFLREFGLELREAFAIGGEESVKRYVTKSDGTAVGAQAYAAAMPRMADRARESAQSTPERPQMSPEQMREQQRLMAYQLAEAVTG
Ga0209382_120563432	3300027909	Populus Rhizosphere	PEYLREIGLELRESFTIGGEDSLKRFLTKSDGTQVGADVLAEATRRYMEQLAASGQMPQMSPERAREQQRLMSYQMAEALVP
Ga0209583_107405321	3300027910	Watersheds	TLTVGGEESLKRYLTRADGTQVGAQAIAEAMARMSERTQATGQSASESRQLPPERTPEQQRLMAYQLAEAVVTASS
Ga0268265_100939993	3300028380	Switchgrass Rhizosphere	REFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0247819_101769461	3300028608	Soil	LRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0247825_109969911	3300028812	Soil	LAGLGLELREAFMIGGEDSLKRYVTKADGTQLGAQTIADAMAWMVQRAQASGQPPPQMPSERTREQQRMAAYQLAEAVVR
Ga0247827_108948461	3300028889	Soil	VGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG
Ga0308189_101320793	3300031058	Soil	LREFGLELVEAFTVGGEDSLKRYLTKADGTQVGAQAIAEATARMMERRRAAGQPAPDGQRMSPDRIREQQRLMAYQLAEAAVARPG
Ga0307499_100064453	3300031184	Soil	PWIFGLPVGGEREFLREFGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREMAPASPEVQQQMSPERMREQQRLSAYHLAEALVAG
Ga0310888_100960761	3300031538	Soil	VGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0310888_106331842	3300031538	Soil	YLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAFVAH
Ga0310813_110162471	3300031716	Soil	LKRYVTKADGTQVGAQTMAEAIARMRERAAAAGQSAPGGQQMSPERMREQQRLMAYQLAEAVVAPREPAQS
Ga0310891_100914152	3300031913	Soil	GGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0308175_1008606651	3300031938	Soil	YVQRFLDVFKDEPWTFGIPVHKEREFLAEYGLELREALMIGGEESLKRYVTRADGTQVGAQTIATAMMRIRDQIQASGDAEMQARMSPERMQEQQRLMAYHIAEAVVS
Ga0310890_102767361	3300032075	Soil	EREFLGEFGLELREAFTIGGEESLKRYLTKADGTQVGAEAVAAAMARMAQYRQAAGPAPEGQEMPAERTREQQRLMSSQLAEAVVGQRA
Ga0310895_107063551	3300032122	Soil	VGGEREFLAEFGLELREAFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQLAEAVVAG
Ga0307415_1000646601	3300032126	Rhizosphere	PVNGERAFLGEAGLELREALTIGGEESIRRYATRADGTQIGAPALAEGMARMAQRAREAGPSSPEAQAISPERMREQQRVMAYQLAEAIVR
Ga0315910_101892833	3300032144	Soil	GEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREMATASPEVQQQMSPERMREQQRLSAYHLAEAVVAG
Ga0315912_109768721	3300032157	Soil	LELREAFTVGGEESLKRYLTKADGTQVGAQAIADAMARMAQRTQATGQSAPASQQMSPERMREQQRLAAYQLAEAVVTPRG
Ga0310889_105402312	3300032179	Soil	RQFVAECGLEMRELLMIGGEESLKRYITKADGTQLGAATIAATMARLMQRAREEGRSVPQATPSPEQMREQQRLMAYQLAEAVVAPS
Ga0306920_1004822881	3300032261	Soil	SLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS
Ga0314783_015202_3_317	3300034662	Soil	LTKNEPWVFGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAAAS
Ga0370497_0019246_3_251	3300034965	Untreated Peat Soil	GLELREALTIGGEDSLKRYLTKADGTQVGAQALAEAAARMAEQARAAGPSTADGQQMSPESMRERQRLMAYQLAEAVVARQS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F095655

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences