NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F095655

Metagenome / Metatranscriptome Family F095655

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F095655
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 85 residues
Representative Sequence LDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAG
Number of Associated Samples 87
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.90 %
% of genes near scaffold ends (potentially truncated) 88.57 %
% of genes from short scaffolds (< 2000 bps) 94.29 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (76.190 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(28.571 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(54.286 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.56%    β-sheet: 1.85%    Coil/Unstructured: 42.59%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 105 Family Scaffolds
PF07883Cupin_2 38.10
PF02311AraC_binding 5.71
PF00903Glyoxalase 2.86
PF04072LCM 2.86
PF08379Bact_transglu_N 1.90
PF12847Methyltransf_18 0.95
PF13561adh_short_C2 0.95
PF11746DUF3303 0.95
PF13847Methyltransf_31 0.95
PF03551PadR 0.95
PF08281Sigma70_r4_2 0.95
PF17167Glyco_hydro_36 0.95
PF04542Sigma70_r2 0.95
PF02371Transposase_20 0.95
PF01717Meth_synt_2 0.95
PF00005ABC_tran 0.95
PF00248Aldo_ket_red 0.95
PF07043DUF1328 0.95
PF136402OG-FeII_Oxy_3 0.95
PF12681Glyoxalase_2 0.95
PF13358DDE_3 0.95
PF01266DAO 0.95
PF10604Polyketide_cyc2 0.95
PF03807F420_oxidored 0.95
PF13365Trypsin_2 0.95

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 105 Family Scaffolds
COG3315O-Methyltransferase involved in polyketide biosynthesisSecondary metabolites biosynthesis, transport and catabolism [Q] 2.86
COG1305Transglutaminase-like enzyme, putative cysteine proteasePosttranslational modification, protein turnover, chaperones [O] 1.90
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.95
COG0620Methionine synthase II (cobalamin-independent)Amino acid transport and metabolism [E] 0.95
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 0.95
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 0.95
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 0.95
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 0.95
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 0.95
COG3547TransposaseMobilome: prophages, transposons [X] 0.95
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 0.95
COG5487Uncharacterized membrane protein YtjA, UPF0391 familyFunction unknown [S] 0.95

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms76.19 %
UnclassifiedrootN/A23.81 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002076|JGI24749J21850_1033912All Organisms → cellular organisms → Bacteria → Acidobacteria738Open in IMG/M
3300002128|JGI24036J26619_10037938All Organisms → cellular organisms → Bacteria → Acidobacteria925Open in IMG/M
3300002155|JGI24033J26618_1018588All Organisms → cellular organisms → Bacteria → Acidobacteria875Open in IMG/M
3300004463|Ga0063356_100631198All Organisms → cellular organisms → Bacteria1456Open in IMG/M
3300004463|Ga0063356_102049271All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium867Open in IMG/M
3300004463|Ga0063356_102580215Not Available780Open in IMG/M
3300004463|Ga0063356_104923488All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300004479|Ga0062595_100313117All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300004479|Ga0062595_100348182All Organisms → cellular organisms → Bacteria → Acidobacteria1030Open in IMG/M
3300004479|Ga0062595_102680952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Actinokineospora → Actinokineospora inagensis501Open in IMG/M
3300004480|Ga0062592_100302460Not Available1212Open in IMG/M
3300004480|Ga0062592_102428622All Organisms → cellular organisms → Bacteria → Acidobacteria526Open in IMG/M
3300005172|Ga0066683_10516474All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300005290|Ga0065712_10391893All Organisms → cellular organisms → Bacteria → Acidobacteria740Open in IMG/M
3300005294|Ga0065705_10495675Not Available783Open in IMG/M
3300005332|Ga0066388_101053825All Organisms → cellular organisms → Bacteria1370Open in IMG/M
3300005335|Ga0070666_10441595All Organisms → cellular organisms → Bacteria → Acidobacteria939Open in IMG/M
3300005335|Ga0070666_10815116All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300005444|Ga0070694_101086817Not Available667Open in IMG/M
3300005455|Ga0070663_100454742All Organisms → cellular organisms → Bacteria → Acidobacteria1056Open in IMG/M
3300005456|Ga0070678_100405607All Organisms → cellular organisms → Bacteria1185Open in IMG/M
3300005471|Ga0070698_101533646All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300005543|Ga0070672_100214822All Organisms → cellular organisms → Bacteria1612Open in IMG/M
3300005615|Ga0070702_100648546All Organisms → cellular organisms → Bacteria → Acidobacteria798Open in IMG/M
3300005764|Ga0066903_108339532Not Available529Open in IMG/M
3300005842|Ga0068858_100162695All Organisms → cellular organisms → Bacteria → Proteobacteria2102Open in IMG/M
3300006237|Ga0097621_100778395All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300006796|Ga0066665_11096340All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300006806|Ga0079220_11797581Not Available540Open in IMG/M
3300006845|Ga0075421_101444350All Organisms → cellular organisms → Bacteria → Acidobacteria755Open in IMG/M
3300006880|Ga0075429_101407345Not Available607Open in IMG/M
3300007788|Ga0099795_10391155Not Available630Open in IMG/M
3300009036|Ga0105244_10468364All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300009094|Ga0111539_11888345All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300009094|Ga0111539_12396486Not Available612Open in IMG/M
3300009100|Ga0075418_10800170All Organisms → cellular organisms → Bacteria → Acidobacteria1018Open in IMG/M
3300009148|Ga0105243_11973610All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300009176|Ga0105242_12133682All Organisms → cellular organisms → Bacteria → Acidobacteria605Open in IMG/M
3300009553|Ga0105249_10369887All Organisms → cellular organisms → Bacteria1457Open in IMG/M
3300009553|Ga0105249_10473675All Organisms → cellular organisms → Bacteria → Acidobacteria1294Open in IMG/M
3300009609|Ga0105347_1389402All Organisms → cellular organisms → Bacteria → Acidobacteria598Open in IMG/M
3300009678|Ga0105252_10193306All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300010046|Ga0126384_10148072All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium1804Open in IMG/M
3300010375|Ga0105239_11990787All Organisms → cellular organisms → Bacteria → Acidobacteria674Open in IMG/M
3300010398|Ga0126383_11766891Not Available707Open in IMG/M
3300011439|Ga0137432_1036508All Organisms → cellular organisms → Bacteria1458Open in IMG/M
3300012884|Ga0157300_1027068All Organisms → cellular organisms → Bacteria → Acidobacteria795Open in IMG/M
3300012904|Ga0157282_10177062All Organisms → cellular organisms → Bacteria → Acidobacteria671Open in IMG/M
3300012908|Ga0157286_10113523All Organisms → cellular organisms → Bacteria → Acidobacteria814Open in IMG/M
3300012911|Ga0157301_10249787All Organisms → cellular organisms → Bacteria → Acidobacteria623Open in IMG/M
3300012912|Ga0157306_10326651All Organisms → cellular organisms → Bacteria → Acidobacteria573Open in IMG/M
3300012913|Ga0157298_10084393All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium823Open in IMG/M
3300013297|Ga0157378_11486501All Organisms → cellular organisms → Bacteria → Acidobacteria722Open in IMG/M
3300013297|Ga0157378_13130403Not Available514Open in IMG/M
3300013308|Ga0157375_12542260All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300015200|Ga0173480_10079543All Organisms → cellular organisms → Bacteria → Acidobacteria1545Open in IMG/M
3300015257|Ga0180067_1072183All Organisms → cellular organisms → Bacteria → Acidobacteria756Open in IMG/M
3300015371|Ga0132258_13349280All Organisms → cellular organisms → Bacteria1102Open in IMG/M
3300015372|Ga0132256_101153492Not Available889Open in IMG/M
3300015372|Ga0132256_103537415Not Available525Open in IMG/M
3300015373|Ga0132257_101051721All Organisms → cellular organisms → Bacteria → Acidobacteria1026Open in IMG/M
3300015373|Ga0132257_103620333Not Available562Open in IMG/M
3300017965|Ga0190266_10014922All Organisms → cellular organisms → Bacteria → Acidobacteria2117Open in IMG/M
3300017965|Ga0190266_10422947All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia748Open in IMG/M
3300018469|Ga0190270_10086824Not Available2343Open in IMG/M
3300018476|Ga0190274_10641889All Organisms → cellular organisms → Bacteria → Acidobacteria1096Open in IMG/M
3300018476|Ga0190274_13028052Not Available564Open in IMG/M
3300018481|Ga0190271_10228785All Organisms → cellular organisms → Bacteria → Acidobacteria1876Open in IMG/M
3300018481|Ga0190271_10735010All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium1110Open in IMG/M
3300019361|Ga0173482_10797523All Organisms → cellular organisms → Bacteria → Acidobacteria500Open in IMG/M
3300019362|Ga0173479_10248089All Organisms → cellular organisms → Bacteria → Acidobacteria781Open in IMG/M
3300021407|Ga0210383_10701087All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium870Open in IMG/M
3300022915|Ga0247790_10078332All Organisms → cellular organisms → Bacteria → Acidobacteria793Open in IMG/M
3300025937|Ga0207669_10127723All Organisms → cellular organisms → Bacteria → Acidobacteria1740Open in IMG/M
3300025941|Ga0207711_10238688All Organisms → cellular organisms → Bacteria1666Open in IMG/M
3300025961|Ga0207712_10897141All Organisms → cellular organisms → Bacteria → Acidobacteria783Open in IMG/M
3300025972|Ga0207668_12020739All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300025972|Ga0207668_12051733All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300026035|Ga0207703_10454675All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300027552|Ga0209982_1074251All Organisms → cellular organisms → Bacteria → Acidobacteria558Open in IMG/M
3300027869|Ga0209579_10757562Not Available525Open in IMG/M
3300027880|Ga0209481_10128733Not Available1239Open in IMG/M
3300027880|Ga0209481_10208053All Organisms → cellular organisms → Bacteria → Acidobacteria979Open in IMG/M
3300027909|Ga0209382_12056343All Organisms → cellular organisms → Bacteria → Proteobacteria546Open in IMG/M
3300027910|Ga0209583_10740532Not Available517Open in IMG/M
3300028380|Ga0268265_10093999All Organisms → cellular organisms → Bacteria → Acidobacteria2404Open in IMG/M
3300028608|Ga0247819_10176946All Organisms → cellular organisms → Bacteria → Acidobacteria1133Open in IMG/M
3300028812|Ga0247825_10996991All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia608Open in IMG/M
3300028889|Ga0247827_10894846All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300031058|Ga0308189_10132079Not Available835Open in IMG/M
3300031184|Ga0307499_10006445All Organisms → cellular organisms → Bacteria → Acidobacteria2363Open in IMG/M
3300031538|Ga0310888_10096076All Organisms → cellular organisms → Bacteria → Acidobacteria1497Open in IMG/M
3300031538|Ga0310888_10633184All Organisms → cellular organisms → Bacteria → Acidobacteria651Open in IMG/M
3300031716|Ga0310813_11016247Not Available757Open in IMG/M
3300031913|Ga0310891_10091415All Organisms → cellular organisms → Bacteria → Acidobacteria922Open in IMG/M
3300031938|Ga0308175_100860665Not Available995Open in IMG/M
3300032075|Ga0310890_10276736All Organisms → cellular organisms → Bacteria1195Open in IMG/M
3300032122|Ga0310895_10706355Not Available525Open in IMG/M
3300032126|Ga0307415_100064660Not Available2546Open in IMG/M
3300032144|Ga0315910_10189283All Organisms → cellular organisms → Bacteria → Acidobacteria1541Open in IMG/M
3300032157|Ga0315912_10976872All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium673Open in IMG/M
3300032179|Ga0310889_10540231All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300032261|Ga0306920_100482288All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1841Open in IMG/M
3300034662|Ga0314783_015202All Organisms → cellular organisms → Bacteria → Acidobacteria1183Open in IMG/M
3300034965|Ga0370497_0019246Not Available1374Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil20.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil10.48%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.76%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere4.76%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil3.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere3.81%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.81%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere2.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.90%
Corn, Switchgrass And Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere1.90%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.90%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere1.90%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.95%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.95%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.95%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.95%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.95%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.95%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.95%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.95%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.95%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.95%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.95%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002076Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3Host-AssociatedOpen in IMG/M
3300002128Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5EnvironmentalOpen in IMG/M
3300002155Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7Host-AssociatedOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005290Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009036Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009609Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT890EnvironmentalOpen in IMG/M
3300009678Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT100EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011439Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT820_2EnvironmentalOpen in IMG/M
3300012884Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2EnvironmentalOpen in IMG/M
3300012904Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1EnvironmentalOpen in IMG/M
3300012908Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012913Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300015200Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)EnvironmentalOpen in IMG/M
3300015257Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231_16_10DEnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017965Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300018476Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 TEnvironmentalOpen in IMG/M
3300018481Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300022915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4EnvironmentalOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027552Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028608Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028889Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031184Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_SEnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032122Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4EnvironmentalOpen in IMG/M
3300032126Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2Host-AssociatedOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032157Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soilEnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300034662Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034965Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_04D_17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24749J21850_103391213300002076Corn, Switchgrass And Miscanthus RhizosphereGEREFLREFGLELREAFPVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
JGI24036J26619_1003793823300002128Corn, Switchgrass And Miscanthus RhizosphereESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
JGI24033J26618_101858813300002155Corn, Switchgrass And Miscanthus RhizosphereTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0063356_10063119833300004463Arabidopsis Thaliana RhizosphereRFLNLTRDEPWVFGLPVGGEREFLREFGLELREAFTIGGEESLRRYLTRADGTQVGAQAVAEMMARMAERAGQSPEGQPIPPERTQEQQRLMAYQLAEAVVAPRE*
Ga0063356_10204927123300004463Arabidopsis Thaliana RhizosphereVGGEESIKRYLTRADGTQVGAQAVAEAMARMAQRAQGPGQSSPEGRSMSPERMREQQRLMAYQLAEAVVVRPE*
Ga0063356_10258021523300004463Arabidopsis Thaliana RhizosphereREFLNEFGLELREILTVGGEESIKRYLTRSDGTQVGAQTIAEAMARMSERARAAAPSAPESQRLSLERTPEQQRLMAYQLAEAVVAPPAMVGPAAL*
Ga0063356_10492348813300004463Arabidopsis Thaliana RhizosphereEREFLREFGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0062595_10031311713300004479SoilMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0062595_10034818213300004479SoilVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0062595_10268095213300004479SoilAAARPFVQRFIDLTRNEPWVFGIPVDGECAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAMAEAMALMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0062592_10030246023300004480SoilIPVGGERSFLSEVGLELREALAIGGEESINRYATKADGTQIGAQAMAEGMARMAQRAREAGAASPEARAIDPERMREQQRTMAYQLAEAVVR*
Ga0062592_10242862213300004480SoilEMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAFVAH*
Ga0066683_1051647413300005172SoilREREFLNDFGFELRETLTVGGEESLKRYLTRADGTEIGAQTIAEAMARMSARTRAAGSEGAQLPPERTPEQQRLMAYQLAEAVVASSSIV*
Ga0065712_1039189323300005290Miscanthus RhizosphereEAFPVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0065705_1049567523300005294Switchgrass RhizosphereFGLELREAFAIGGEESLKRYVTKADGTQVGAQAIAEAMARMAQRAGAAGQSPPPAQQMSPEQMREQQRLMAYQLAEAIVSG*
Ga0066388_10105382513300005332Tropical Forest SoilRYVTTADGTQLGAATIAAAIARLRQRIQEAGESMPQMQMTPEQMREQQRLMAYQLAEASVPTPP*
Ga0070666_1044159513300005335Switchgrass RhizosphereREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0070666_1081511623300005335Switchgrass RhizosphereMFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0070694_10108681713300005444Corn, Switchgrass And Miscanthus RhizosphereHELGLDLREAFMIGGEESLKRYVTRADGTQLGAEAMAAAMARMRERMQAAGQAPPQGQAPAGQTSPERMREQQRLSAYQLAEAVVPAG*
Ga0070663_10045474223300005455Corn RhizosphereVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0070678_10040560723300005456Miscanthus RhizosphereLTKNEPWVFGLPVGGEREFLREFGLEVREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANPSPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0070698_10153364623300005471Corn, Switchgrass And Miscanthus RhizosphereEFLNDFGFELREMLTVGGEESLKRYLTRADGTAIGAQTIAEAMARMSARAQAAGSAGTQLSPERTPEQQRLMAYQLAEAVVASSPIVRA*
Ga0070672_10021482213300005543Miscanthus RhizosphereGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0070702_10064854623300005615Corn, Switchgrass And Miscanthus RhizosphereEFGLELREAFPVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0066903_10833953223300005764Tropical Forest SoilGERAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0068858_10016269513300005842Switchgrass RhizosphereEREFLSEFGLELREAFMIGGEDSLKRYLTRADGTQVGAQALAEGMARMAERAQAAGQQMPPQRTPEQQRLMAYQLAEAVVAPRG*
Ga0097621_10077839513300006237Miscanthus RhizosphereFAVGGEESLKRYLTKADGTQVGAQALAEAMARMAERARAAGQSAPEGPQGSSSERMQEQQRAMAYQMAEAVVT*
Ga0066665_1109634013300006796SoilEFLNDFGFELRETLTVGGEESLKRYLTRADGTEIGAQTIAEAMARMSARTRAAGSEGAQLPPERTPEQQRLMAYQLAEAVVASSSIG*
Ga0079220_1179758113300006806Agricultural SoilWVFGIPVDGERAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAIAEAMARMRERMQEQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0075421_10144435013300006845Populus RhizospherePVGAEKTFLNECGLELREAMTIGGPESIARYATKPDGTQIGAAAIAEGMARMAERARQAGPSSPEAQALSPERMREQQRTMAYQLAEAVVPTDSRRTEGTQTLRTH*
Ga0075429_10140734513300006880Populus RhizosphereDEPWVFGIPVGREREFLAEFGLELREAFAVGGEESLKRYVTKADGTQVGAQAIAEAMARMAQRAGAAGQSPPPAQQMSPEQMREQQRLMAYQLAEAIVSG*
Ga0099795_1039115513300007788Vadose Zone SoilTRNEPWVFGLPVGGEREFLGELGLDLREAFTIGSEESLKRYLTKADGSQVGAQAVAEAMARMAERTPAGGQSAPGNQPPSPERTREQQRLMAYQLAEAVVARRG*
Ga0105244_1046836413300009036Miscanthus RhizosphereLIKDEPWVFGLPEEGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0111539_1188834513300009094Populus RhizosphereIPVGGERTFLSEVGLELREALTIGGEESLTRYATKADGTQIGAEAIAESMARMAQRAREAGAASPEARAIDPQRMREQQRTMAYQLAEAIVR*
Ga0111539_1239648613300009094Populus RhizosphereFGLELREAFTIGGEESLKRYLTKADGSQVGAEAVAAAMARMAEHRRATGPAPEGQQMPTERTREQQRLMSYQLAEAVVARRG*
Ga0075418_1080017023300009100Populus RhizosphereVFGIPVGGEREFLAEFGLERREAFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQMAEAVVAG*
Ga0105243_1197361013300009148Miscanthus RhizosphereLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAG*
Ga0105242_1213368223300009176Miscanthus RhizosphereRELGLDLREMFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHPAEAAVAS*
Ga0105249_1036988733300009553Switchgrass RhizosphereLREFGLELREAFTIGGEDSLKRYLTKADGTQVGARAIAEAMARMAERARAAGHSPSQGPQMPPERAREQQRLTSYQLAEAVVAPRG*
Ga0105249_1047367523300009553Switchgrass RhizosphereFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQLAEAVVAG*
Ga0105347_138940223300009609SoilVFGLPIGGEREFLRELGLDFREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS*
Ga0105252_1019330623300009678SoilVFGLPIGGEREFLRELGLDLREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS*
Ga0126384_1014807233300010046Tropical Forest SoilLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0105239_1199078713300010375Corn RhizosphereGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0126383_1176689123300010398Tropical Forest SoilAMTIGGEDSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS*
Ga0137432_103650833300011439SoilVGGERSFLSEVGLELREALAIGGEESLVRYATKADGTQVGAQAIAEGMARMAQRAREAGPASPEARAIDPERMREQQRTMAYQLAEALVR*
Ga0157300_102706823300012884SoilEREFLRELGLDLREMFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0157282_1017706213300012904SoilLDLIKDEPWVFGLPEEGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMGYQLAEAVVSG*
Ga0157286_1011352313300012908SoilIKDEPWVFGLPEEGERDFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAPAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0157301_1024978723300012911SoilRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAAAS*
Ga0157306_1032665123300012912SoilWVFGLPEDGEREFLREFGLELREAFPVGGEESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG*
Ga0157298_1008439323300012913SoilMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAA
Ga0157378_1148650123300013297Miscanthus RhizosphereMFTVGGEDSAKRYLTRVDGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLSEAAVAS*
Ga0157378_1313040313300013297Miscanthus RhizospherePWVFGLPLGGEREFLAELGLDLREAFTVGGEESLKRYLTRADGTQVGAQALAEATARMAARTQAVGQSAPDGQPMSAERMQERQRMMAYQLAEAVVAQPA*
Ga0157375_1254226023300013308Miscanthus RhizosphereAVGGEESLKRYLTKADGTQVGAQALAEAMARMAERARAAGQSAPEGPQGSSSERMQEQQRAMAYQMAEAVVT*
Ga0173480_1007954313300015200SoilNEPWVFGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAIARMAARAREAAPASPEVQQQMSPERMREQQRLSAYHLAEAAVAS*
Ga0180067_107218323300015257SoilEREFLHELNLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMVARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVTG*
Ga0132258_1334928023300015371Arabidopsis RhizosphereAFTIGGEESLKRYLTKADGSQVGAQTMAEAMARMAAARTAAAGQSAPEGPQMPPERTPEQQRLMSYQLAEAVVARRA*
Ga0132256_10115349223300015372Arabidopsis RhizosphereGEREFLREFGLELREVFAVGGEESLKRFVTKADGTQVGAQAIAAAMARMAQRTQDTERPAPSPEQMARMREQQRLMGYQIAEAVVVRT*
Ga0132256_10353741513300015372Arabidopsis RhizosphereEDSLKRYVTRSDGTLVGAEAITAAMARMTERMRAAGQSAPEGQQVASPERMQEQQRVMAYQMAEAVVAPQG*
Ga0132257_10105172123300015373Arabidopsis RhizosphereGGEESLKRFVTRADGTQVGAEAVAAAMARMAQRAREAVESGAVQAPQLSPERMREQQRLMAYQLAEAVVA*
Ga0132257_10362033313300015373Arabidopsis RhizosphereYVQRFLDLIKDEPWVFGMPVDGEREFLREFGLELREVFAVGGEESLKRFVTKADGTQVGAQAIAAAMARMAQRTQDTERPAPSPEQMARMREQQRLMGYQIAEAVVVRT*
Ga0190266_1001492233300017965SoilMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAAAS
Ga0190266_1042294723300017965SoilLKMTRDEPWVFGLPVGGEREFLGEIGLELREAFTIGGEESAKRYLTKGDGTQVGAEAIAAAMARMAEQARTAGQSSPPGPPGPQMSPERAREQQRLMAYQLAEAVVVRT
Ga0190270_1008682423300018469SoilVFGLPIGGEREFLRELGLDFREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0190274_1064188923300018476SoilGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0190274_1302805223300018476SoilVFGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRAEGTQVGAQVIAEAMARMVAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0190271_1022878513300018481SoilVFGLPIGGEREFLRELGLDLREMFTVGGEDSARRFLTRADGTQVGAQLIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0190271_1073501033300018481SoilMGAEREFLGEFGLDLREAFAIGGEESVKRYLTKADGTQVGARALAEAAKRMADQAQAAGPSTPAGPQMSPEQMREQQRVMSYQLAEAVVTRPA
Ga0173482_1079752323300019361SoilEFLREFGLDVREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAFVAH
Ga0173479_1024808913300019362SoilELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0210383_1070108713300021407SoilPFVQRFIDLTRNEPWVFGIPVAGARAFLGEFGLELREAMTIGGEDSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQMSPERLREQQGLQAYQLAEAVVPPRS
Ga0247790_1007833223300022915SoilMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0207669_1012772333300025937Miscanthus RhizosphereEFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0207711_1023868833300025941Switchgrass RhizosphereFGLELRESFAVGGEESLKRYLTKADGTQVGAQALAEAMARMAERRRAAGQSAPEGQQGPSSERMQEQQRVMAYQMAEAVVT
Ga0207712_1089714123300025961Switchgrass RhizosphereEFLAEFGLELREAFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQLAEAVVAG
Ga0207668_1202073923300025972Switchgrass RhizosphereYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAVVAG
Ga0207668_1205173313300025972Switchgrass RhizosphereGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0207703_1045467513300026035Switchgrass RhizosphereGEREFLSEFGLELREAFMIGGEDSLKRYLTRADGTQVGAQALAEGMARMAERAQAAGQQMPPQRTPEQQRLMAYQLAEAVVAPRG
Ga0209982_107425123300027552Arabidopsis Thaliana RhizosphereESSKRFLTKSDGTQVGAQAIAAAMARMAARARESAPAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG
Ga0209579_1075756223300027869Surface SoilPWQFGLPVGAEREFLAEFGLDLREAFAIGGEESLKRYLTRADGSQLGAQVIADARARMMQGAQAEGQPGVDGPQRSQERMREQQRLMAYQLAEAVVVRL
Ga0209481_1012873323300027880Populus RhizosphereSLARYATKADGTQVGAQAMAEGMARMAQRAREAGAASPEARAIDPERMREQQRTMAYQLAEAVVR
Ga0209481_1020805323300027880Populus RhizosphereREFLREFGLELREAFAIGGEESVKRYVTKSDGTAVGAQAYAAAMPRMADRARESAQSTPERPQMSPEQMREQQRLMAYQLAEAVTG
Ga0209382_1205634323300027909Populus RhizospherePEYLREIGLELRESFTIGGEDSLKRFLTKSDGTQVGADVLAEATRRYMEQLAASGQMPQMSPERAREQQRLMSYQMAEALVP
Ga0209583_1074053213300027910WatershedsTLTVGGEESLKRYLTRADGTQVGAQAIAEAMARMSERTQATGQSASESRQLPPERTPEQQRLMAYQLAEAVVTASS
Ga0268265_1009399933300028380Switchgrass RhizosphereREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0247819_1017694613300028608SoilLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0247825_1099699113300028812SoilLAGLGLELREAFMIGGEDSLKRYVTKADGTQLGAQTIADAMAWMVQRAQASGQPPPQMPSERTREQQRMAAYQLAEAVVR
Ga0247827_1089484613300028889SoilVGGEESSKRFLTKSDGTQLGAQAIAAAMARMAARARESAQAQPGGQQMSPELMRRQQRVMAYQLAEAVVSG
Ga0308189_1013207933300031058SoilLREFGLELVEAFTVGGEDSLKRYLTKADGTQVGAQAIAEATARMMERRRAAGQPAPDGQRMSPDRIREQQRLMAYQLAEAAVARPG
Ga0307499_1000644533300031184SoilPWIFGLPVGGEREFLREFGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREMAPASPEVQQQMSPERMREQQRLSAYHLAEALVAG
Ga0310888_1009607613300031538SoilVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAVVAS
Ga0310888_1063318423300031538SoilYLTRADGTQVGAQAIAEAMARMAARAREVANASPEVQQQMSPERMREQQRLSAYHLAEAFVAH
Ga0310813_1101624713300031716SoilLKRYVTKADGTQVGAQTMAEAIARMRERAAAAGQSAPGGQQMSPERMREQQRLMAYQLAEAVVAPREPAQS
Ga0310891_1009141523300031913SoilGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAVAS
Ga0308175_10086066513300031938SoilYVQRFLDVFKDEPWTFGIPVHKEREFLAEYGLELREALMIGGEESLKRYVTRADGTQVGAQTIATAMMRIRDQIQASGDAEMQARMSPERMQEQQRLMAYHIAEAVVS
Ga0310890_1027673613300032075SoilEREFLGEFGLELREAFTIGGEESLKRYLTKADGTQVGAEAVAAAMARMAQYRQAAGPAPEGQEMPAERTREQQRLMSSQLAEAVVGQRA
Ga0310895_1070635513300032122SoilVGGEREFLAEFGLELREAFAIGGEESLKRYVTKSDGTQVGAQAIAEAMARMAQRAQAAQAAGQSTPPEGAQMSPERMREQQRLMAYQLAEAVVAG
Ga0307415_10006466013300032126RhizospherePVNGERAFLGEAGLELREALTIGGEESIRRYATRADGTQIGAPALAEGMARMAQRAREAGPSSPEAQAISPERMREQQRVMAYQLAEAIVR
Ga0315910_1018928333300032144SoilGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREMATASPEVQQQMSPERMREQQRLSAYHLAEAVVAG
Ga0315912_1097687213300032157SoilLELREAFTVGGEESLKRYLTKADGTQVGAQAIADAMARMAQRTQATGQSAPASQQMSPERMREQQRLAAYQLAEAVVTPRG
Ga0310889_1054023123300032179SoilRQFVAECGLEMRELLMIGGEESLKRYITKADGTQLGAATIAATMARLMQRAREEGRSVPQATPSPEQMREQQRLMAYQLAEAVVAPS
Ga0306920_10048228813300032261SoilSLRRYATKADGTQVGAQAMAEAMARMRERMQAQPAFQSQISPERLREQQRLQAYQLAEAVVPPRS
Ga0314783_015202_3_3173300034662SoilLTKNEPWVFGLPIGGEREFLRELGLDLREMFTVGGEDSAKRYLTRADGTQVGAQAIAEAMARMAARAREAAPTSPEVQQQMSPERMREQQRLSAYHLAEAAAAS
Ga0370497_0019246_3_2513300034965Untreated Peat SoilGLELREALTIGGEDSLKRYLTKADGTQVGAQALAEAAARMAEQARAAGPSTADGQQMSPESMRERQRLMAYQLAEAVVARQS

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.