Basic Information | |
---|---|
Family ID | F095696 |
Family Type | Metagenome |
Number of Sequences | 105 |
Average Sequence Length | 56 residues |
Representative Sequence | YLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ |
Number of Associated Samples | 61 |
Number of Associated Scaffolds | 105 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 2.02 % |
% of genes near scaffold ends (potentially truncated) | 86.67 % |
% of genes from short scaffolds (< 2000 bps) | 79.05 % |
Associated GOLD sequencing projects | 55 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.51 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Unclassified (54.286 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (22.857 % of family members) |
Environment Ontology (ENVO) | Unclassified (23.810 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (56.190 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.84% β-sheet: 0.00% Coil/Unstructured: 51.16% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
⦗Top⦘ |
Visualization |
---|
Freshwater Sediment Freshwater Freshwater Freshwater Lake Freshwater Anoxic Lake Water Sediment Peatland Freshwater Wetlands Wetland Deep Subsurface Natural And Restored Wetlands Wetland Marine Sediment Sediment Saline Water Soil Fen Anaerobic Enrichment Culture |
Powered by ApexCharts |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
---|---|
|
|
Zoom: | Powered by OpenStreetMap |
⦗Top⦘ |
Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGIcombinedJ13530_1009117752 | 3300001213 | Wetland | QLYKLSRQQGISGNSFAMAAEVLLDKWHNRGLDPVVLAAIRKDVFDVPNPTPPEE* |
JGI20214J51650_109551802 | 3300003541 | Wetland | TIFYVAYLNYARQLYKLSRQQGISGESFALGAQVMLDKWANRGLDSVVLARIRTEVFDASAPTP* |
Ga0065167_10721483 | 3300004693 | Freshwater | WKLSRQQEISGENFAMAAQVLLDKWAARGLNPTVLAAIRTEVFDIGEPKP* |
Ga0007798_101289342 | 3300004775 | Freshwater | YVPYLNFGRQLYKLSRQQQISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPKP* |
Ga0007800_100815811 | 3300004776 | Freshwater | YVPYLNFGRQLYKLSRQQQISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPRP* |
Ga0007800_101144091 | 3300004776 | Freshwater | KLSRQQQISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDISAPKP* |
Ga0007800_101188521 | 3300004776 | Freshwater | NFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKILAKIRTDVFDIPAPKP* |
Ga0007800_101596331 | 3300004776 | Freshwater | YKLSRQQGISGESFALGAQVLLDKWSARGLDSAVLARIRTEVFDAVAPAP* |
Ga0007800_101834321 | 3300004776 | Freshwater | GRQLWKLSRQQEISGESFAMAAQVLLDKWAARGLNPTVLAAIRTDVFDIGEPKP* |
Ga0068994_102002351 | 3300005216 | Natural And Restored Wetlands | GISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKS* |
Ga0079037_1005901751 | 3300006224 | Freshwater Wetlands | IQFVPYLSYGRQLYKLSRQREISGESLKMANRVLHDKWHNRGLDPVVLAAIAKDVFDIAPL* |
Ga0105098_104424941 | 3300009081 | Freshwater Sediment | LYKLSRQQGISGESFAIQAQVLLDKWAARGLDSAVLARIRTEVFDASTPTP* |
Ga0116202_1000070819 | 3300010302 | Anoxic Lake Water | QLYKLSRQQFISGESLAMAAQVLLDKWAARGSDPEVLAKVRKDFSDVEPPRP* |
Ga0116202_100227331 | 3300010302 | Anoxic Lake Water | NFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKS* |
Ga0116202_100483392 | 3300010302 | Anoxic Lake Water | LSYARQLYKLSRQQGISGESFALRAQVLLDKWTSRGLDAGVLARIRTEVFDSVAPTP* |
Ga0136653_100057911 | 3300010319 | Anoxic Lake Water | LNYARQLYKLSRQQGISGESFALQAQVLLDKWAGRGLEPAVLARIRTEVFDTSAPTP* |
Ga0136653_100787794 | 3300010319 | Anoxic Lake Water | LYKLSKQRGISGESFAMAAQVLLDKWAARGCDPNVLAKIRTDVFDIPAPK* |
Ga0136653_101010184 | 3300010319 | Anoxic Lake Water | LNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK* |
Ga0136653_101185184 | 3300010319 | Anoxic Lake Water | STSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRSDVFDIPAPKA* |
Ga0136653_102103451 | 3300010319 | Anoxic Lake Water | LSYARQLYKLSRQRGISGESFALQAQVLLDKWANRGLDAAVLARIRTEVFDAVAPAP* |
Ga0136653_102553761 | 3300010319 | Anoxic Lake Water | LYVSYLNFGRQLYKMTRKQNITGESFAMAAQVLLDKWAARGCNPDVLATIRKEVFNIDAPKK* |
Ga0114922_109678752 | 3300011118 | Deep Subsurface | RQLYKLSRQERVSDENFAMAAQVLLDKWAARGCDPKVLAKIRKDVFDIDVPKP* |
Ga0151652_102120843 | 3300011340 | Wetland | AYLNYARQLYKLSRQQGISGESFALSAQVLLDKWSARGLDSAVLARIRTEVFDAVAPVP* |
Ga0163200_12745801 | 3300013088 | Freshwater | RQLYKLTHQQHITGESFAMAAQVLLDKWASRGCDPKVLAAIRKDVFNIDAPKK* |
Ga0163210_10550101 | 3300013091 | Freshwater | LNFGRQLCKLTRQQNITGESFAMAAHVLLDKWAARGCDPDVLATIRKEVFNVDAPKK* |
Ga0163199_11988612 | 3300013092 | Freshwater | QLYKLSRQQGISGESFAMSAQVLLDKWSARGLDSAILARIRTEVFDTSAATP* |
(restricted) Ga0172369_105001761 | 3300013125 | Freshwater | KLSRQQGISGESFALQAQVLLDKWAGRGLEPAVLARIRTEVFDTSAPTP* |
(restricted) Ga0172365_101352212 | 3300013127 | Sediment | PYLSYARQLYKLSRQKGISGESFALSAQVLLEKWANRGLDADVLARIRTEVFDAVAPAP* |
(restricted) Ga0172366_100422791 | 3300013128 | Sediment | SKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKA* |
(restricted) Ga0172366_100553574 | 3300013128 | Sediment | QLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK* |
(restricted) Ga0172366_100776952 | 3300013128 | Sediment | YLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKS* |
(restricted) Ga0172366_101280872 | 3300013128 | Sediment | LTRQQEISGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP* |
(restricted) Ga0172364_102761171 | 3300013129 | Sediment | RQLWKLTRQQEINGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP* |
(restricted) Ga0172364_103533491 | 3300013129 | Sediment | KQRGISGESFAMDAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKP* |
(restricted) Ga0172364_108723662 | 3300013129 | Sediment | QKVSGESMPLAARVLSDKRKARGCDPKVLALIRTEVYDIAEP* |
(restricted) Ga0172363_102751343 | 3300013130 | Sediment | CGVSTSQYVPHLSFGRQLYKMSRQQFISGESLAMATQVLLDKWAARGCDPKVLAKIRKEVFDVEAPE* |
(restricted) Ga0172362_102186673 | 3300013133 | Sediment | YLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ* |
(restricted) Ga0172362_103110081 | 3300013133 | Sediment | RQQEISGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP* |
(restricted) Ga0172362_105956901 | 3300013133 | Sediment | YKLSKQRGISGESFAMAAQVLLDKWAARGCDPNVLAKIRTDVFDIPAPK* |
(restricted) Ga0172375_105741681 | 3300013137 | Freshwater | LYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ* |
(restricted) Ga0172371_100134311 | 3300013138 | Freshwater | LSRQQNISGESFAMAAQVLVDKWAARGCDPKVLDKIRTDVFDVAAPKP* |
(restricted) Ga0172371_106823071 | 3300013138 | Freshwater | GRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP* |
Ga0182017_105518201 | 3300014494 | Fen | LSYARQLYKLSRQQGISGESFALVAKVLLDKWAARGLDSAVLARIRTEVFDAGAPAP* |
Ga0182017_110054862 | 3300014494 | Fen | MQYVPYLNVGRQSYELSRQKLISGESFAMAAHVQLDKWTARGCDPKVLAKIRKDVFDIDVPV* |
Ga0182019_108241572 | 3300014498 | Fen | RQQGISGESFALSAEVLLQKWAARGLDSAVLAQIRTEVFDVSAPAP* |
Ga0182019_109561631 | 3300014498 | Fen | YKLSRQQGISGESFALVAKVLLDKWASRGLNPAVLAAIRTDVFDASAPTP* |
Ga0182021_100997434 | 3300014502 | Fen | LRQGISGESFALVAKVLLDKWTARGLDAAVLARIRTEVFDASAPTP* |
Ga0182021_104127081 | 3300014502 | Fen | YARQLYKLSRQQSISGESFALSVQVLLDKWTARGLHSAVLARIRTEVFDVVAPAP* |
Ga0182021_111957632 | 3300014502 | Fen | VPYLSYARQLYKLSRQQGISGESFALVAKVLLDKWASRGLNPAVLAAIRTDVFDASAPTP |
Ga0182021_121387341 | 3300014502 | Fen | VSTSQYVPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKILAKVRKDVFDVEAPK* |
Ga0182021_122867361 | 3300014502 | Fen | FGRQLWKLSRQQEISGESFAMAAQVLLDKWQARGLNPTVLAAIRTEVFDIGVPKP* |
Ga0182021_123914752 | 3300014502 | Fen | FGRQLWKLSRQQEISGESFAMAAQVLLDKWQARGLNPTVLAAIRTEVFDIGVPRT* |
Ga0182021_129815831 | 3300014502 | Fen | KTSRQQSISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDISAPSH* |
Ga0182027_113972512 | 3300014839 | Fen | SRQQSISGESFALSAQVLLDKWSARGLNPNVLAAIRTQVFDASAPTP* |
Ga0187886_12530801 | 3300018018 | Peatland | MYVPCLGYARQLYKLSRQQGISDESFALGAQVLLDKWAARGLNPAVIARIRAEVFDASAPTP |
Ga0194113_103475681 | 3300020074 | Freshwater Lake | VAYLDFARQLYKLSHTRGISGDSFALAADVLLQHWADRGLDPVVLARIRTQVFDVGEPTP |
Ga0194110_107207182 | 3300020084 | Freshwater Lake | ILYIPYLNYSRQLYKLSRKRNISGDSMKMAAQVLLEKWRLRGLDPKVLAAIRWDVFSIPA |
Ga0224495_101935662 | 3300022208 | Sediment | LNFGRQLYKLSRQQHISGESFAMAAQVLLDKWAARGCDPKVLAKIRKDVFDIAEPK |
Ga0212124_103679722 | 3300022553 | Freshwater | YLSYARQLYKLSRQQGISGESFAMVAKVLLEKWEARGLSPDVLAAIRTQVFDASAPTP |
Ga0212121_1000439217 | 3300022556 | Anoxic Lake Water | VPYLNFGRQLYKLSRQQFISGESLAMAAQVLLDKWAARGSDPEVLAKVRKDFSDVEPPRP |
Ga0212121_100660879 | 3300022556 | Anoxic Lake Water | TRQQNITGESFAMAAQVLLDKWAARGCDPDVLAVIRKEVFNVDAPKK |
Ga0212121_101538401 | 3300022556 | Anoxic Lake Water | LSYARQLYKLSRQQGISGESFALRAQVLLDKWTSRGLDAGVLARIRTEVFDSVAPTP |
Ga0212121_102575702 | 3300022556 | Anoxic Lake Water | SQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP |
Ga0212121_104071212 | 3300022556 | Anoxic Lake Water | SQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPAVLAKIRTDVFDIPAPKS |
Ga0236337_12253062 | 3300022653 | Freshwater | VSREQSISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDIAAPKS |
(restricted) Ga0233423_100131426 | 3300023177 | Freshwater | VPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPKP |
(restricted) Ga0233423_100884802 | 3300023177 | Freshwater | VPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDISAPKP |
(restricted) Ga0233420_101260211 | 3300024300 | Freshwater | AAMAKLSPEMLYKLSRQQSISGESFAMAAQVLLDKWAARGCDPKILAKVRKDVFDVEAPK |
(restricted) Ga0233422_103618532 | 3300024333 | Freshwater | VPYLNFGRQLYKMSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP |
(restricted) Ga0233421_103538932 | 3300024341 | Freshwater | NFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP |
Ga0209610_10682254 | 3300025136 | Anoxic Lake Water | QYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKA |
Ga0209609_100459521 | 3300025145 | Anoxic Lake Water | KLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDVPAPK |
Ga0209609_100570554 | 3300025145 | Anoxic Lake Water | KLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK |
Ga0208047_10248371 | 3300025279 | Freshwater | NFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKP |
Ga0208047_10323951 | 3300025279 | Freshwater | VSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPRP |
Ga0208047_10866571 | 3300025279 | Freshwater | LTFAFCLLTCASDARYVAYLNFGRQLCKLTRQQNITGESFAMAAHVLLDKWAARGCDPDVLATIRKEVFNVDAPKK |
Ga0208045_10677672 | 3300025306 | Freshwater | YLSYARQLYKLSRQQGISGESFALVAKVLLEKWEARGLSPDVLAAIRTQVFDASAPTP |
Ga0208828_10369182 | 3300025807 | Freshwater | VSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP |
Ga0268279_11730801 | 3300028169 | Saline Water | QGISGESFAMGAQVLLDKWAARGLDSAILARIRTEVFDVVAPTQ |
Ga0268282_11064071 | 3300028276 | Saline Water | VSTSQYVPYLNFGRQRYKLSRQQHISGESFAMAAQVLLDRWAARGCDPKVLAKIRKDVFDIDIPKP |
Ga0268276_10342751 | 3300028299 | Saline Water | LSYARQLYKLSRQQGISGESFAMVAKVLLDKWAARGLDPAVLAAIRTEVFDAVVPAP |
Ga0310376_10407521 | 3300028916 | Anaerobic Enrichment Culture | VKARQTLNSAGVHTVMYVPYLDYARQLYRLSRQKGISGESFALQAQVLLDKWANRGLAPAVLARIRTEVFDTGAPTP |
Ga0272444_104443122 | 3300031111 | Marine Sediment | YVPYLNFGRQLYKLSRQQNIQGESLAMAAQVLLDKWAARGCDPDVLAKIRTDVFSVQEPK |
Ga0315291_107491261 | 3300031707 | Sediment | MYVPYLSYARQLYKLSRQQGISGESFALAASVLLSKWAARGLDPDVLVAIRTDVFDIAPPTP |
Ga0315280_101663861 | 3300031862 | Sediment | GVSTSQYVPYLNFGRQLYKLSRQQHISGESFAMAAQVLFDKWAARGCDPKVLAKIRKDVFDIAEPK |
Ga0315280_102102653 | 3300031862 | Sediment | QQGISGESFALGAQVLLDKWANRGLDASILARIRTEVFDAVAPAP |
Ga0315289_112767202 | 3300032046 | Sediment | TVLYVSYLNFGRQLYKLTRKQSITGESFAMAAQVLLDKWDARGCDPKVLATIRKEVFNIDEPKK |
Ga0315289_113955811 | 3300032046 | Sediment | SRQQGISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDIAEPK |
Ga0315284_101892634 | 3300032053 | Sediment | RQQGISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDVAAPK |
Ga0315281_111912271 | 3300032163 | Sediment | YKLSRQQNISGESFAMAAQVLLDKWTARGCDPKVLAKIRTDVFDISAPK |
Ga0315281_115380071 | 3300032163 | Sediment | YARQLYKLSRQEGISGESFAMGAQVLLDKWANRGLDASILARIRTEVFDAVAPAP |
Ga0315281_121504181 | 3300032163 | Sediment | LYKLTRKQNITGESFAMAAQVLLDKWAARGCDPKVLATIRKEVFNIDAPKK |
Ga0315283_112564621 | 3300032164 | Sediment | LNASGVHTIMYVPYLSYARQLYKLSRQQGISGESFALVSKVLLDKWAARGLDAAVLARIRTEVFDVVAPAP |
Ga0315268_126047501 | 3300032173 | Sediment | HTIFYVAYLNYARQLYKLSRQQGISGESFALGAQVLLDKWTARGLDSAVLARIRTEVFDAAVPTT |
Ga0315286_118973512 | 3300032342 | Sediment | LSYARQLYKLSRQQGISGESFALVAKVLLDKWAARGLNPDALAAIRTQVFDTSVPTP |
Ga0316622_1000507537 | 3300033416 | Soil | RQERISDENFAMAAQVLLDKWAARGCDPEVLAKIRMDVFDIAAPA |
Ga0316622_1000984055 | 3300033416 | Soil | MEAKARQSLNSAGEQTIMYVPYLSIVRQFYEPSRQRGISGESFALRTQVLLEKWANRGLDATVPARD |
Ga0316622_1001863031 | 3300033416 | Soil | LSYGRQLYKLSRQREISGESLKMANKVLHDKWHNRGLDPVVLAAIAKDVFDIAPL |
Ga0316622_1014310042 | 3300033416 | Soil | PYLNFGRQLWKLSRQQEISGESFAMAAQVLLDKWAARGLNPTVLAAIRTEVFDIGEPKP |
Ga0316622_1015292832 | 3300033416 | Soil | KLSRQQGISGESFAMGAQVLLDKWANRGLNPAVLARIRTEVFDASAPTT |
Ga0316626_111314872 | 3300033485 | Soil | TMELWACDKRVKEVLSGKRVQTIQYVPYLSYGRQLYKLSRQRGISGESLKMANKVLHDKWHNRGLSESVLAAIAKDVFDIAPL |
Ga0316626_119450731 | 3300033485 | Soil | SGKGVQTIQFVPYLSYGRQLYKLSRQREISGESLKMANKVLHDKWHNRGLDPVVLAAIAKDVFDIAPL |
Ga0316621_110826931 | 3300033488 | Soil | YVQQIYSLSRQQRISGGSFAMSAQVLLGNWPTRGLDSAALAQIQTEVFYAVTPTP |
Ga0316628_1021319112 | 3300033513 | Soil | VPYLNFGRQLWKLSRQQEIAGESFAMAAQVLLDKWQARGLNPTILAAIRTEVFDIGAPSDGGR |
Ga0316617_1017167022 | 3300033557 | Soil | AAGVHTIFYVAYLNYARQLYKLSRQQGISGESFALQAQVLLDKWASRGLDAAVLARIRTEVFDAVAPGP |
⦗Top⦘ |