NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F095696

Metagenome Family F095696

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095696
Family Type Metagenome
Number of Sequences 105
Average Sequence Length 56 residues
Representative Sequence YLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ
Number of Associated Samples 61
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.02 %
% of genes near scaffold ends (potentially truncated) 86.67 %
% of genes from short scaffolds (< 2000 bps) 79.05 %
Associated GOLD sequencing projects 55
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (54.286 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment
(22.857 % of family members)
Environment Ontology (ENVO) Unclassified
(23.810 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(56.190 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.84%    β-sheet: 0.00%    Coil/Unstructured: 51.16%
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Variant

510152025303540455055YLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
45.7%54.3%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Freshwater Sediment
Freshwater
Freshwater
Freshwater Lake
Freshwater
Anoxic Lake Water
Sediment
Peatland
Freshwater Wetlands
Wetland
Deep Subsurface
Natural And Restored Wetlands
Wetland
Marine Sediment
Sediment
Saline Water
Soil
Fen
Anaerobic Enrichment Culture
6.7%17.1%16.2%22.9%2.9%9.5%11.4%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10091177523300001213WetlandQLYKLSRQQGISGNSFAMAAEVLLDKWHNRGLDPVVLAAIRKDVFDVPNPTPPEE*
JGI20214J51650_1095518023300003541WetlandTIFYVAYLNYARQLYKLSRQQGISGESFALGAQVMLDKWANRGLDSVVLARIRTEVFDASAPTP*
Ga0065167_107214833300004693FreshwaterWKLSRQQEISGENFAMAAQVLLDKWAARGLNPTVLAAIRTEVFDIGEPKP*
Ga0007798_1012893423300004775FreshwaterYVPYLNFGRQLYKLSRQQQISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPKP*
Ga0007800_1008158113300004776FreshwaterYVPYLNFGRQLYKLSRQQQISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPRP*
Ga0007800_1011440913300004776FreshwaterKLSRQQQISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDISAPKP*
Ga0007800_1011885213300004776FreshwaterNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKILAKIRTDVFDIPAPKP*
Ga0007800_1015963313300004776FreshwaterYKLSRQQGISGESFALGAQVLLDKWSARGLDSAVLARIRTEVFDAVAPAP*
Ga0007800_1018343213300004776FreshwaterGRQLWKLSRQQEISGESFAMAAQVLLDKWAARGLNPTVLAAIRTDVFDIGEPKP*
Ga0068994_1020023513300005216Natural And Restored WetlandsGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKS*
Ga0079037_10059017513300006224Freshwater WetlandsIQFVPYLSYGRQLYKLSRQREISGESLKMANRVLHDKWHNRGLDPVVLAAIAKDVFDIAPL*
Ga0105098_1044249413300009081Freshwater SedimentLYKLSRQQGISGESFAIQAQVLLDKWAARGLDSAVLARIRTEVFDASTPTP*
Ga0116202_10000708193300010302Anoxic Lake WaterQLYKLSRQQFISGESLAMAAQVLLDKWAARGSDPEVLAKVRKDFSDVEPPRP*
Ga0116202_1002273313300010302Anoxic Lake WaterNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKS*
Ga0116202_1004833923300010302Anoxic Lake WaterLSYARQLYKLSRQQGISGESFALRAQVLLDKWTSRGLDAGVLARIRTEVFDSVAPTP*
Ga0136653_1000579113300010319Anoxic Lake WaterLNYARQLYKLSRQQGISGESFALQAQVLLDKWAGRGLEPAVLARIRTEVFDTSAPTP*
Ga0136653_1007877943300010319Anoxic Lake WaterLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPNVLAKIRTDVFDIPAPK*
Ga0136653_1010101843300010319Anoxic Lake WaterLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK*
Ga0136653_1011851843300010319Anoxic Lake WaterSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRSDVFDIPAPKA*
Ga0136653_1021034513300010319Anoxic Lake WaterLSYARQLYKLSRQRGISGESFALQAQVLLDKWANRGLDAAVLARIRTEVFDAVAPAP*
Ga0136653_1025537613300010319Anoxic Lake WaterLYVSYLNFGRQLYKMTRKQNITGESFAMAAQVLLDKWAARGCNPDVLATIRKEVFNIDAPKK*
Ga0114922_1096787523300011118Deep SubsurfaceRQLYKLSRQERVSDENFAMAAQVLLDKWAARGCDPKVLAKIRKDVFDIDVPKP*
Ga0151652_1021208433300011340WetlandAYLNYARQLYKLSRQQGISGESFALSAQVLLDKWSARGLDSAVLARIRTEVFDAVAPVP*
Ga0163200_127458013300013088FreshwaterRQLYKLTHQQHITGESFAMAAQVLLDKWASRGCDPKVLAAIRKDVFNIDAPKK*
Ga0163210_105501013300013091FreshwaterLNFGRQLCKLTRQQNITGESFAMAAHVLLDKWAARGCDPDVLATIRKEVFNVDAPKK*
Ga0163199_119886123300013092FreshwaterQLYKLSRQQGISGESFAMSAQVLLDKWSARGLDSAILARIRTEVFDTSAATP*
(restricted) Ga0172369_1050017613300013125FreshwaterKLSRQQGISGESFALQAQVLLDKWAGRGLEPAVLARIRTEVFDTSAPTP*
(restricted) Ga0172365_1013522123300013127SedimentPYLSYARQLYKLSRQKGISGESFALSAQVLLEKWANRGLDADVLARIRTEVFDAVAPAP*
(restricted) Ga0172366_1004227913300013128SedimentSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKA*
(restricted) Ga0172366_1005535743300013128SedimentQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK*
(restricted) Ga0172366_1007769523300013128SedimentYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKS*
(restricted) Ga0172366_1012808723300013128SedimentLTRQQEISGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP*
(restricted) Ga0172364_1027611713300013129SedimentRQLWKLTRQQEINGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP*
(restricted) Ga0172364_1035334913300013129SedimentKQRGISGESFAMDAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKP*
(restricted) Ga0172364_1087236623300013129SedimentQKVSGESMPLAARVLSDKRKARGCDPKVLALIRTEVYDIAEP*
(restricted) Ga0172363_1027513433300013130SedimentCGVSTSQYVPHLSFGRQLYKMSRQQFISGESLAMATQVLLDKWAARGCDPKVLAKIRKEVFDVEAPE*
(restricted) Ga0172362_1021866733300013133SedimentYLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ*
(restricted) Ga0172362_1031100813300013133SedimentRQQEISGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP*
(restricted) Ga0172362_1059569013300013133SedimentYKLSKQRGISGESFAMAAQVLLDKWAARGCDPNVLAKIRTDVFDIPAPK*
(restricted) Ga0172375_1057416813300013137FreshwaterLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ*
(restricted) Ga0172371_1001343113300013138FreshwaterLSRQQNISGESFAMAAQVLVDKWAARGCDPKVLDKIRTDVFDVAAPKP*
(restricted) Ga0172371_1068230713300013138FreshwaterGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP*
Ga0182017_1055182013300014494FenLSYARQLYKLSRQQGISGESFALVAKVLLDKWAARGLDSAVLARIRTEVFDAGAPAP*
Ga0182017_1100548623300014494FenMQYVPYLNVGRQSYELSRQKLISGESFAMAAHVQLDKWTARGCDPKVLAKIRKDVFDIDVPV*
Ga0182019_1082415723300014498FenRQQGISGESFALSAEVLLQKWAARGLDSAVLAQIRTEVFDVSAPAP*
Ga0182019_1095616313300014498FenYKLSRQQGISGESFALVAKVLLDKWASRGLNPAVLAAIRTDVFDASAPTP*
Ga0182021_1009974343300014502FenLRQGISGESFALVAKVLLDKWTARGLDAAVLARIRTEVFDASAPTP*
Ga0182021_1041270813300014502FenYARQLYKLSRQQSISGESFALSVQVLLDKWTARGLHSAVLARIRTEVFDVVAPAP*
Ga0182021_1119576323300014502FenVPYLSYARQLYKLSRQQGISGESFALVAKVLLDKWASRGLNPAVLAAIRTDVFDASAPTP
Ga0182021_1213873413300014502FenVSTSQYVPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKILAKVRKDVFDVEAPK*
Ga0182021_1228673613300014502FenFGRQLWKLSRQQEISGESFAMAAQVLLDKWQARGLNPTVLAAIRTEVFDIGVPKP*
Ga0182021_1239147523300014502FenFGRQLWKLSRQQEISGESFAMAAQVLLDKWQARGLNPTVLAAIRTEVFDIGVPRT*
Ga0182021_1298158313300014502FenKTSRQQSISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDISAPSH*
Ga0182027_1139725123300014839FenSRQQSISGESFALSAQVLLDKWSARGLNPNVLAAIRTQVFDASAPTP*
Ga0187886_125308013300018018PeatlandMYVPCLGYARQLYKLSRQQGISDESFALGAQVLLDKWAARGLNPAVIARIRAEVFDASAPTP
Ga0194113_1034756813300020074Freshwater LakeVAYLDFARQLYKLSHTRGISGDSFALAADVLLQHWADRGLDPVVLARIRTQVFDVGEPTP
Ga0194110_1072071823300020084Freshwater LakeILYIPYLNYSRQLYKLSRKRNISGDSMKMAAQVLLEKWRLRGLDPKVLAAIRWDVFSIPA
Ga0224495_1019356623300022208SedimentLNFGRQLYKLSRQQHISGESFAMAAQVLLDKWAARGCDPKVLAKIRKDVFDIAEPK
Ga0212124_1036797223300022553FreshwaterYLSYARQLYKLSRQQGISGESFAMVAKVLLEKWEARGLSPDVLAAIRTQVFDASAPTP
Ga0212121_10004392173300022556Anoxic Lake WaterVPYLNFGRQLYKLSRQQFISGESLAMAAQVLLDKWAARGSDPEVLAKVRKDFSDVEPPRP
Ga0212121_1006608793300022556Anoxic Lake WaterTRQQNITGESFAMAAQVLLDKWAARGCDPDVLAVIRKEVFNVDAPKK
Ga0212121_1015384013300022556Anoxic Lake WaterLSYARQLYKLSRQQGISGESFALRAQVLLDKWTSRGLDAGVLARIRTEVFDSVAPTP
Ga0212121_1025757023300022556Anoxic Lake WaterSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP
Ga0212121_1040712123300022556Anoxic Lake WaterSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPAVLAKIRTDVFDIPAPKS
Ga0236337_122530623300022653FreshwaterVSREQSISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDIAAPKS
(restricted) Ga0233423_1001314263300023177FreshwaterVPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPKP
(restricted) Ga0233423_1008848023300023177FreshwaterVPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDISAPKP
(restricted) Ga0233420_1012602113300024300FreshwaterAAMAKLSPEMLYKLSRQQSISGESFAMAAQVLLDKWAARGCDPKILAKVRKDVFDVEAPK
(restricted) Ga0233422_1036185323300024333FreshwaterVPYLNFGRQLYKMSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP
(restricted) Ga0233421_1035389323300024341FreshwaterNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP
Ga0209610_106822543300025136Anoxic Lake WaterQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKA
Ga0209609_1004595213300025145Anoxic Lake WaterKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDVPAPK
Ga0209609_1005705543300025145Anoxic Lake WaterKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK
Ga0208047_102483713300025279FreshwaterNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKP
Ga0208047_103239513300025279FreshwaterVSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPRP
Ga0208047_108665713300025279FreshwaterLTFAFCLLTCASDARYVAYLNFGRQLCKLTRQQNITGESFAMAAHVLLDKWAARGCDPDVLATIRKEVFNVDAPKK
Ga0208045_106776723300025306FreshwaterYLSYARQLYKLSRQQGISGESFALVAKVLLEKWEARGLSPDVLAAIRTQVFDASAPTP
Ga0208828_103691823300025807FreshwaterVSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP
Ga0268279_117308013300028169Saline WaterQGISGESFAMGAQVLLDKWAARGLDSAILARIRTEVFDVVAPTQ
Ga0268282_110640713300028276Saline WaterVSTSQYVPYLNFGRQRYKLSRQQHISGESFAMAAQVLLDRWAARGCDPKVLAKIRKDVFDIDIPKP
Ga0268276_103427513300028299Saline WaterLSYARQLYKLSRQQGISGESFAMVAKVLLDKWAARGLDPAVLAAIRTEVFDAVVPAP
Ga0310376_104075213300028916Anaerobic Enrichment CultureVKARQTLNSAGVHTVMYVPYLDYARQLYRLSRQKGISGESFALQAQVLLDKWANRGLAPAVLARIRTEVFDTGAPTP
Ga0272444_1044431223300031111Marine SedimentYVPYLNFGRQLYKLSRQQNIQGESLAMAAQVLLDKWAARGCDPDVLAKIRTDVFSVQEPK
Ga0315291_1074912613300031707SedimentMYVPYLSYARQLYKLSRQQGISGESFALAASVLLSKWAARGLDPDVLVAIRTDVFDIAPPTP
Ga0315280_1016638613300031862SedimentGVSTSQYVPYLNFGRQLYKLSRQQHISGESFAMAAQVLFDKWAARGCDPKVLAKIRKDVFDIAEPK
Ga0315280_1021026533300031862SedimentQQGISGESFALGAQVLLDKWANRGLDASILARIRTEVFDAVAPAP
Ga0315289_1127672023300032046SedimentTVLYVSYLNFGRQLYKLTRKQSITGESFAMAAQVLLDKWDARGCDPKVLATIRKEVFNIDEPKK
Ga0315289_1139558113300032046SedimentSRQQGISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDIAEPK
Ga0315284_1018926343300032053SedimentRQQGISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDVAAPK
Ga0315281_1119122713300032163SedimentYKLSRQQNISGESFAMAAQVLLDKWTARGCDPKVLAKIRTDVFDISAPK
Ga0315281_1153800713300032163SedimentYARQLYKLSRQEGISGESFAMGAQVLLDKWANRGLDASILARIRTEVFDAVAPAP
Ga0315281_1215041813300032163SedimentLYKLTRKQNITGESFAMAAQVLLDKWAARGCDPKVLATIRKEVFNIDAPKK
Ga0315283_1125646213300032164SedimentLNASGVHTIMYVPYLSYARQLYKLSRQQGISGESFALVSKVLLDKWAARGLDAAVLARIRTEVFDVVAPAP
Ga0315268_1260475013300032173SedimentHTIFYVAYLNYARQLYKLSRQQGISGESFALGAQVLLDKWTARGLDSAVLARIRTEVFDAAVPTT
Ga0315286_1189735123300032342SedimentLSYARQLYKLSRQQGISGESFALVAKVLLDKWAARGLNPDALAAIRTQVFDTSVPTP
Ga0316622_10005075373300033416SoilRQERISDENFAMAAQVLLDKWAARGCDPEVLAKIRMDVFDIAAPA
Ga0316622_10009840553300033416SoilMEAKARQSLNSAGEQTIMYVPYLSIVRQFYEPSRQRGISGESFALRTQVLLEKWANRGLDATVPARD
Ga0316622_10018630313300033416SoilLSYGRQLYKLSRQREISGESLKMANKVLHDKWHNRGLDPVVLAAIAKDVFDIAPL
Ga0316622_10143100423300033416SoilPYLNFGRQLWKLSRQQEISGESFAMAAQVLLDKWAARGLNPTVLAAIRTEVFDIGEPKP
Ga0316622_10152928323300033416SoilKLSRQQGISGESFAMGAQVLLDKWANRGLNPAVLARIRTEVFDASAPTT
Ga0316626_1113148723300033485SoilTMELWACDKRVKEVLSGKRVQTIQYVPYLSYGRQLYKLSRQRGISGESLKMANKVLHDKWHNRGLSESVLAAIAKDVFDIAPL
Ga0316626_1194507313300033485SoilSGKGVQTIQFVPYLSYGRQLYKLSRQREISGESLKMANKVLHDKWHNRGLDPVVLAAIAKDVFDIAPL
Ga0316621_1108269313300033488SoilYVQQIYSLSRQQRISGGSFAMSAQVLLGNWPTRGLDSAALAQIQTEVFYAVTPTP
Ga0316628_10213191123300033513SoilVPYLNFGRQLWKLSRQQEIAGESFAMAAQVLLDKWQARGLNPTILAAIRTEVFDIGAPSDGGR
Ga0316617_10171670223300033557SoilAAGVHTIFYVAYLNYARQLYKLSRQQGISGESFALQAQVLLDKWASRGLDAAVLARIRTEVFDAVAPGP


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