NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F095716

Metagenome / Metatranscriptome Family F095716

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F095716
Family Type Metagenome / Metatranscriptome
Number of Sequences 105
Average Sequence Length 62 residues
Representative Sequence IDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Number of Associated Samples 89
Number of Associated Scaffolds 105

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(16.191 % of family members)
Environment Ontology (ENVO) Unclassified
(34.286 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(55.238 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 38.24%    β-sheet: 16.18%    Coil/Unstructured: 45.59%
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102030405060IDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANRCytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreSignal PeptideTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Soil
Terrestrial Soil
Soil
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Soil
Soil
Tropical Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Populus Rhizosphere
Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Rhizosphere Soil
Switchgrass Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Avena Fatua Rhizosphere
15.2%2.9%13.3%2.9%3.8%2.9%2.9%5.7%2.9%16.2%3.8%3.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPWSG_012609202067725003SoilMVIDARTIVGAAGAFAVARLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
MBSR1b_0582.000071902162886012Miscanthus RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
F14TC_10141820923300000559SoilMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEGKDLGAADTKDSA
JGI11643J12802_1001656233300000890SoilVAGLALWLLSPPAEQPGKHGSVEVVQMQERSWTVEVKDLGAADTKEPARTA
JGI11643J12802_1032920023300000890SoilVAGLALWLLAPPAEQPGKHGSVEVVQMQEPAWTVEVKDLGAADTKEPARTA
soilL1_1006984823300003267Sugarcane Root And Bulk SoilMVIEARTIVGAVGAFAVAGLALWLLSPPAEQPTRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0063454_10048270913300004081SoilGVMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0062590_10066967213300004157SoilMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0063356_10062746033300004463Arabidopsis Thaliana RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGTAETKEAARTAANR*
Ga0066388_10095159123300005332Tropical Forest SoilMVIEARTVVGAAGAFAVAGLALWLLSPPAEQPNRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0066388_10208820023300005332Tropical Forest SoilMVIEARTIVGAVGAFAVAGLALWLLSPPAEQPSRHGSVEITQVQEKSWTVEVKDLGAADTKDTARTASNR*
Ga0066388_10516518113300005332Tropical Forest SoilVIEARTIVGAAGAFAVAGLALWLLSPPAEEPGKHGTVEVVQMQEKSWQVEVKDLGAADTKEPARTAANR*
Ga0070680_10065094513300005336Corn RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0070689_10001321313300005340Switchgrass RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0070701_1012375523300005438Corn, Switchgrass And Miscanthus RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0070679_10021017243300005530Corn RhizosphereDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0070679_10098345613300005530Corn RhizosphereDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0070704_10128994323300005549Corn, Switchgrass And Miscanthus RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0070664_100000991113300005564Corn RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0068861_10030941313300005719Switchgrass RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0068862_100002074193300005844Switchgrass RhizosphereVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0068862_10058032513300005844Switchgrass RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEKPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR*
Ga0075432_1055973313300006058Populus RhizosphereMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTAR
Ga0075422_1015094423300006196Populus RhizosphereLWLLSPPAEQPGKRGSVEVTQVQERSWTVEVKDLGAADTADTARTAANR*
Ga0075428_10216234113300006844Populus RhizosphereMVIEARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGTVEVVQMQEPSWTVEVKDLGAADSKEPARTAANR*
Ga0075421_10070265433300006845Populus RhizosphereMVIEARTIVGAVAAFAVAGAALWLFSPPADEQAKRGSVEVVQMQERAWTVEVKDLGAADADAPARTAANR*
Ga0075430_10102508523300006846Populus RhizospherePPAEQPGKHGSVEVVQMQERSWTVEVKDLGAADTKEPARTAANR*
Ga0075431_10141135423300006847Populus RhizosphereMVIEARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGSVEVVQMQEPAWTVEVKDLGAADTKEPARTAANR*
Ga0075431_10185468923300006847Populus RhizosphereMVIEARTIVGAVAAFAVAGAALWLFSPPADEQAKRGSVEVVQMQERAWTVEVKDLGAAD
Ga0075433_1080196913300006852Populus RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTA
Ga0075434_10090565623300006871Populus RhizosphereARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDEARTAANR*
Ga0079218_1001809153300007004Agricultural SoilMVIEARTIVGAAAAFAVAGAALWVFSPPADQQTRRGSVEVTQVEERPWTVEVKDLGATDATDAARTAANR*
Ga0079218_1118075913300007004Agricultural SoilMVIEARTVIGAAGAFAVAGLALWLLSPSADQQAKRGSVEVTQVLERTWTVDVKDLGATDTTDTARTAANR*
Ga0075435_10093390823300007076Populus RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAGDTKDTARTAANR*
Ga0105240_1139554223300009093Corn RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0111539_1002961753300009094Populus RhizosphereLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0075418_1003595553300009100Populus RhizosphereLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDAARTAANR*
Ga0075423_1053696333300009162Populus RhizospherePPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0075423_1237104423300009162Populus RhizosphereMVIQARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGTVEVVQMQEPSWTVEVKDLGAADSKEPARTAANR*
Ga0105242_1011568113300009176Miscanthus RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0134123_1026552033300010403Terrestrial SoilVAGLALWLLSPPAEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0134123_1055335813300010403Terrestrial SoilMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR*
Ga0150984_10630778223300012469Avena Fatua RhizosphereLALWLLSPPPEQPGRHGSVEVMQVQEKSWTVEVKDLGAADTKDSARTAANR*
Ga0157304_103407423300012882SoilVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR*
Ga0157293_1012982613300012898SoilMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTART
Ga0157288_1015135513300012901SoilVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0157291_1005493823300012902SoilLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR*
Ga0157286_1032290823300012908SoilAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR*
Ga0157308_1009893923300012910SoilMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDT
Ga0164303_1151515513300012957SoilMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAAD
Ga0163162_1022956213300013306Switchgrass RhizosphereAGLALWLRSPPPEQPGRHGTVEVTQVQEKCWTVEVKDLGATDAKDTARTAANR*
Ga0132258_1381609623300015371Arabidopsis RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPNRHGSVEVTQVQEKSWTVEVKDLGAADTKDSARTAANR*
Ga0132256_10051350023300015372Arabidopsis RhizosphereLALWLLSPPAEQPDRHGSVEVTQVQEKSWTVEVKDLGAADTKDQARTAANR*
Ga0132257_10022417123300015373Arabidopsis RhizosphereMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDEARTAANR*
Ga0132255_10074037413300015374Arabidopsis RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDQARTAANR*
Ga0190265_1035145523300018422SoilVAGLALWLLSPSADQQAKQGTVEVTQMQERSWTVEVKDLGATDTTDSARTAANR
Ga0190274_1057516023300018476SoilVAGLALWMLSPPAEQEGRHGSVEVTQVQERSWTVEVKDLGATDTTEPTRTAANR
Ga0173481_1021951623300019356SoilMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0173481_1071761013300019356SoilMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGTAETKEAARTAANR
Ga0190264_1015552723300019377SoilVAGLALWLLTPPADQQAKQGSVEVTQVQERSWTVEVKDLGATDTTDSARTAANR
Ga0247792_107191013300022880SoilVMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207696_108142113300025711Switchgrass RhizosphereMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207642_1018329323300025899Miscanthus RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207688_1030531123300025901Corn, Switchgrass And Miscanthus RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0207680_1007350323300025903Switchgrass RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0207649_1003077723300025920Corn RhizosphereVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207652_1070748213300025921Corn RhizosphereRAFKAGGGMAMDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207681_1020386633300025923Switchgrass RhizosphereAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTSRTAANR
Ga0207689_1001370553300025942Miscanthus RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207712_1001873143300025961Switchgrass RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207668_1000473793300025972Switchgrass RhizosphereVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0207640_1028962433300025981Corn RhizosphereAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0207658_1001373513300025986Switchgrass RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDSARTAANR
Ga0207677_1032712613300026023Miscanthus RhizosphereAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGTAETKEAARTAANR
Ga0207674_1080311323300026116Corn RhizosphereAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0207698_1147413713300026142Corn RhizosphereAAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTASNR
Ga0207428_1004969943300027907Populus RhizosphereMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDAARTAANR
Ga0207428_1005471943300027907Populus RhizosphereMVIEARTIVGAAGAFAVAGLALWLLAPPAEQPGKHGTVEVVQMQEPSWTVEVKDLGAADSKEPARTAANR
Ga0209382_1040827233300027909Populus RhizosphereMVIEARTIVGAVAAFAVAGAALWLFSPPADEQAKRGSVEVVQMQERAWTVEVKDLGAADADAPARTAANR
Ga0268265_1073841123300028380Switchgrass RhizosphereMAIDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0268265_1085237923300028380Switchgrass RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEKPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0268264_1237376023300028381Switchgrass RhizosphereEGFMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0247828_1097800123300028587SoilMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGKHGTVEVVQMQEKSWQVEVKDLGAADAKEAARTAANR
Ga0310888_1058969113300031538SoilWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0310887_1016689833300031547SoilAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310886_1066034623300031562SoilGVMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKEAARTAANR
Ga0310886_1071521323300031562SoilIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310813_1138254123300031716SoilMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADAKEPARTASNR
Ga0307406_1025766513300031901RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310891_1009853623300031913SoilVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARPAANR
Ga0310885_1007546233300031943SoilLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310884_1024643913300031944SoilLSPPPEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0307416_10036884033300032002RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPSKHGTVEVTQVEERSWTVEVKDLGAADTKDTARTAANR
Ga0307416_10307109223300032002RhizosphereALWLLSPSADQAKRGSVEVTQVQERSWTVEVKDLGATDTTDSTRTAANR
Ga0310897_1033999713300032003SoilGGVMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPSRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0307411_1032617333300032005RhizosphereMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGKHGTVEVVQMQEKSWQVEVKDLGAADTKEAARTAANR
Ga0310906_1122096613300032013SoilFAVAGLALWLLSPPAEQPGRHGSVEVTQVEEKSWTVEVKDLGAADTKDTARTAANR
Ga0310899_1018145723300032017SoilDARTIVGAAGAFAVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0310890_1011162133300032075SoilMAIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTARTAANR
Ga0310889_1009062033300032179SoilVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDTART
Ga0310810_1031442013300033412SoilVAGLALWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTA
Ga0310810_1039713233300033412SoilMVIDARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGSVEVTQVQEKSWTVEVKDLGAADTKDEARTAANR
Ga0310810_1132409613300033412SoilSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR
Ga0314793_157845_45_2573300034668SoilMVIEARTIVGAAGAFAVAGLALWLLSPPAEQPGRHGTVEVVQMEEKSWQVEVKDLGAADTKDTARTAANR
Ga0373959_0222071_8_1573300034820Rhizosphere SoilLWLLSPPPEQPGRHGTVEVTQVQEKSWTVEVKDLGATDAKDTARTAANR


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